Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_07g0017840 | OGI:07058990 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr07:20651745-20656156 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaccaagggcccaccgctcatctatcatctcttctccatttatccctctttgctcgccgaccacctccaccctcgcgccatggccacgccacgtggccatctccccgcctgcgtcgccgccgtcgcggcggcggcggcgctcctaacctccctcctaccgccgcccgtcgcgggccagcccctcggcaacttctgcggcgacagcggcaactacacggcgaacagcacctaccagggcaacatccggagcatctccgccaccctccccaagaacgcctcctcgtcccgcacgctcttcgccaccgccaccctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacaccgccaacgccaccgcctgcgccggctgcgtcgccgccgcgttccaggacgcgcagcagctctgcccctacaacaaggacgccaccgtcttctacgacgcctgcgcgctccgcttctccaaccagaacttcctcgcctccaccaacggcgacaacaagttcctcatcctcatgaacacgcagaacgtgtccgcgccggccaaggtgttcgacgccgccgtgggcgtcctcatcaacgccaccgccgactacgcggcggcgaactcgtccaggcggttcggcacgggggaggaagggttcaacggcagcaagatttacgggctggcgcagtgcacgccggacatggcgacggccacctgccggagctgcctggggggaatcgtcgggatgatgcccaagtatttcagcgggaagcagggcggcagggttctcggactgcggtgcaactacaggtacgagatatatcctttcttcgacggggtctcgctgctgcagctcccggcggcatcactgggagcgccgccggcgccatctccggcggccgtaaacgtcacgccgccggccaccaccaccggtaccagacgacgaggtgagttgggtgaaactgatatacgaagtagatctcatttcaacaatgcgatatgctaaactcaaaaggggggaaaacagtatcctgatatcctaaatggcctgaattttgtgttggtcacggacagaggatcagtccatgcatgtgtgcagcaattttagttcgatgggtttgaatagaagtggtgtttgatttcaccgtaggaatttgaaacgatatttgattcggtacctaagtatgctatcagcaatctaattatcgattggtccacagttccacaacactgttattggctttgagtcggtccacatgaagaaactgaatcgtccaaatacagaaaaaaaatttatttttttggcaaaatttgtccaaattctacctgtttttgtcgataaccgttccattgtcgtggctattgaaaaaacctctagggacctgtttttggtgaaaatggcatttgtaaacctcgagttgtccatcgtgactgattcctagccatagaagttgttgtagaggcagggccagtcctatgattttgagggctctaggcaaactcatcacgatggaccctctaaggtatatataaaattttatgatatatatatatatgctaattttacttgcaaaacaaaaacaaaaacatccatatattaaatttaacatgtatggtaattatcaagaaataaaatcgatcaaaataacaatatatttgtaacttggaactaatatcattattcattaacttaatgaagaatagaaccccatcatatccattgcttcccatgaaaagatacttctttgggcatttcttgatgcaaaatcatcaagaacggtattaagatcaatagtgttcaagatatccttctcgattgagcgcatagccaagccatttaacctttcttgtgacatagttgatctcaaatagttcttcaacaacttcaatttttgagaaacttctttcagctgaaactacagtcacaggtacagttaaaagaattcgataggcagctgaaacatttgtatagcaatctgcatccataacaaactttaaaatctcaggcgcggagacatcgaagaatctggtaaactcacttgcaacacctttaattctgaataaaaatcattgatctcaacatcggatgaggtactcgactactagaattagatgcccccccctactactagaattagatgcccccccccctaacatggccccccaccatcatgggcccccggcggtcgcttcggctgcatagggctagggccggccctgtgtagaggttacgaactcgtctttctttttgaagttagattagtctttcatgatttgttttttagtacgaacaacttaatttggaagaaaatattttctttgtcattttgtggactggtctgatgttcacatctttaatcgcatgaatctatgagtttccttttagactagtcatataccagatgtttccatgatcaattttgctaatgatcaattttgctaaacgtttgtcgcgtgatttctcgtctgaaatttgacgtttttctggccgtcggattgtgcgtctagattggtggtggatttagcgctatgaggccacgtggggagccacgtgggccggtctggtccgaattttctggccattttctagctgttacggcgtatttctcactctctctctctctcccgccttccttctcgctctctctttcatgcgctttcttttctcattctctctctccctttctttcgattttctatgtaaaaattgatttctttaaccattgaaaaaataagacaactaaaaataaaaaaataaaaataaaattacagtcctatataactaaaattacaattgtaaatttagttgatataacacgtaagtgcactgtaattttgataaaaatatcgtgtaagtaaatatgcattttttattttctttaaaatataaaattacactcctacataactaaaattacatttgtaaatttaattgatatggcatgtaagtgcattgtaattctgattaaaaatactgtgtaagtgaatatgtatttgttatttttttaaaaacatataaaattacagtcctatataactaaaattacatttgtaaattcagttaatatgacatgtaagtgcactgtatttttataacaatattgtgtaagtaaatatgcatttgttattttctttaaaatataaaattatagatctatgtaactaaaattacatttgtaaattcagttgatatgatatgtaagtgcactgtaattttgataaaaataatgtgtaagtaaatatgtatttgtcattttcttttgtagtccatgcagtttcttttttaagaagatcaattctatgatccttgaggaggtaccatgaagtacaaaaaatttagtgtaaaatttggtacgtactgtgaggtaccaaatttacaataaaaaattgatacctcctaaaggatcgtaaaattgctcctttaagaatggttagtgtaagttttcaaaaaaaaaaagatggttagtgtatactggttaatgatgtcaaaattatttatacttgtgtttctgtcttatgtcttacattaattgatgcattccgtttacgggatgaacagggaacaccactggtagggttttagccattgcattgcctatagtcgctgcaatactggctgctgtagtaatttgcttttatatctggaagaggaagacggaacgagcaagaaagccatcaatagcaggtaagttcctgtagttcattcaaattccattaatttccagtacgtgttctcaatacacttgaaatggcaaaattaagtttttgtctatgcagtgacttcattctcatacaaaagcaagaattccattaatgcattacaccattattgttgtattttttttctgaaacaatagatccaacagacccagcggacatagaaagtattgattcacttattcttagtatatcaactttacgagtggcaacaaacaactttgatgacagcaataaacttggcgaaggaggttttggtgcggtttataaggtgctaattataccattccattttagtttttatattcaatactttacagtttcagccagtaaaaattctctatctgtacagggagtcctccctagtgatcaagaaatagcagtgaaaaggctatcgcaaagttctcgacaagggatagaggagttgaaaaatgagcttgttttggttgctaagcttcaacacaagaatttggttagactccttggtgtttgcttggaagaacatgaaaaattacttgtgtatgaatacatgcctaacaaaagcctcgacacaattctgtttggtgggtactcttcagccttttcaacagtgaatcaataactgaaacttttttatgtataattttgaagttttttcttctatgtgacagatcctgatagaagcaatgtgctggattggtggaaaagattaa
More
|
||||||||||
| CDS seq | atggccacgccacgtggccatctccccgcctgcgtcgccgccgtcgcggcggcggcggcgctcctaacctccctcctaccgccgcccgtcgcgggccagcccctcggcaacttctgcggcgacagcggcaactacacggcgaacagcacctaccagggcaacatccggagcatctccgccaccctccccaagaacgcctcctcgtcccgcacgctcttcgccaccgccaccctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacaccgccaacgccaccgcctgcgccggctgcgtcgccgccgcgttccaggacgcgcagcagctctgcccctacaacaaggacgccaccgtcttctacgacgcctgcgcgctccgcttctccaaccagaacttcctcgcctccaccaacggcgacaacaagttcctcatcctcatgaacacgcagaacgtgtccgcgccggccaaggtgttcgacgccgccgtgggcgtcctcatcaacgccaccgccgactacgcggcggcgaactcgtccaggcggttcggcacgggggaggaagggttcaacggcagcaagatttacgggctggcgcagtgcacgccggacatggcgacggccacctgccggagctgcctggggggaatcgtcgggatgatgcccaagtatttcagcgggaagcagggcggcagggttctcggactgcggtgcaactacaggtacgagatatatcctttcttcgacggggtctcgctgctgcagctcccggcggcatcactgggagcgccgccggcgccatctccggcggccgtaaacgtcacgccgccggccaccaccaccggtaccagacgacgagggaacaccactggtagggttttagccattgcattgcctatagtcgctgcaatactggctgctgtagtaatttgcttttatatctggaagaggaagacggaacgagcaagaaagccatcaatagcagatccaacagacccagcggacatagaaagtattgattcacttattcttagtatatcaactttacgagtggcaacaaacaactttgatgacagcaataaacttggcgaaggaggttttggtgcggtttataagggagtcctccctagtgatcaagaaatagcagtgaaaaggctatcgcaaagttctcgacaagggatagaggagttgaaaaatgagcttgttttggttgctaagcttcaacacaagaatttggttagactccttggtgtttgcttggaagaacatgaaaaattacttgtgtatgaatacatgcctaacaaaagcctcgacacaattctgtttggtgggtactcttcagccttttcaacaatcctgatagaagcaatgtgctggattggtggaaaagattaa
More
|
||||||||||
| Protein seq | MATPRGHLPACVAAVAAAAALLTSLLPPPVAGQPLGNFCGDSGNYTANSTYQGNIRSISATLPKNASSSRTLFATATLGAVPDIVYALALCRGDTANATACAGCVAAAFQDAQQLCPYNKDATVFYDACALRFSNQNFLASTNGDNKFLILMNTQNVSAPAKVFDAAVGVLINATADYAAANSSRRFGTGEEGFNGSKIYGLAQCTPDMATATCRSCLGGIVGMMPKYFSGKQGGRVLGLRCNYRYEIYPFFDGVSLLQLPAASLGAPPAPSPAAVNVTPPATTTGTRRRGNTTGRVLAIALPIVAAILAAVVICFYIWKRKTERARKPSIADPTDPADIESIDSLILSISTLRVATNNFDDSNKLGEGGFGAVYKGVLPSDQEIAVKRLSQSSRQGIEELKNELVLVAKLQHKNLVRLLGVCLEEHEKLLVYEYMPNKSLDTILFGGYSSAFSTILIEAMCWIGGKD |
||||||||||
| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0017840 | OsCMeo_07g0017840.01 | Chr07 | 20651824 | 20656156 | + | NAM | ||
| CDS seq | atggccacgccacgtggccatctccccgcctgcgtcgccgccgtcgcggcggcggcggcgctcctaacctccctcctaccgccgcccgtcgcgggccagcccctcggcaacttctgcggcgacagcggcaactacacggcgaacagcacctaccagggcaacatccggagcatctccgccaccctccccaagaacgcctcctcgtcccgcacgctcttcgccaccgccaccctcggcgccgtcccggacatcgtctacgcgctcgcgctctgccgcggcgacaccgccaacgccaccgcctgcgccggctgcgtcgccgccgcgttccaggacgcgcagcagctctgcccctacaacaaggacgccaccgtcttctacgacgcctgcgcgctccgcttctccaaccagaacttcctcgcctccaccaacggcgacaacaagttcctcatcctcatgaacacgcagaacgtgtccgcgccggccaaggtgttcgacgccgccgtgggcgtcctcatcaacgccaccgccgactacgcggcggcgaactcgtccaggcggttcggcacgggggaggaagggttcaacggcagcaagatttacgggctggcgcagtgcacgccggacatggcgacggccacctgccggagctgcctggggggaatcgtcgggatgatgcccaagtatttcagcgggaagcagggcggcagggttctcggactgcggtgcaactacaggtacgagatatatcctttcttcgacggggtctcgctgctgcagctcccggcggcatcactgggagcgccgccggcgccatctccggcggccgtaaacgtcacgccgccggccaccaccaccggtaccagacgacgagggaacaccactggtagggttttagccattgcattgcctatagtcgctgcaatactggctgctgtagtaatttgcttttatatctggaagaggaagacggaacgagcaagaaagccatcaatagcagatccaacagacccagcggacatagaaagtattgattcacttattcttagtatatcaactttacgagtggcaacaaacaactttgatgacagcaataaacttggcgaaggaggttttggtgcggtttataagggagtcctccctagtgatcaagaaatagcagtgaaaaggctatcgcaaagttctcgacaagggatagaggagttgaaaaatgagcttgttttggttgctaagcttcaacacaagaatttggttagactccttggtgtttgcttggaagaacatgaaaaattacttgtgtatgaatacatgcctaacaaaagcctcgacacaattctgtttggtgggtactcttcagccttttcaacaatcctgatagaagcaatgtgctggattggtggaaaagattaa
More
|
|||||||
| Protein seq | MATPRGHLPACVAAVAAAAALLTSLLPPPVAGQPLGNFCGDSGNYTANSTYQGNIRSISATLPKNASSSRTLFATATLGAVPDIVYALALCRGDTANATACAGCVAAAFQDAQQLCPYNKDATVFYDACALRFSNQNFLASTNGDNKFLILMNTQNVSAPAKVFDAAVGVLINATADYAAANSSRRFGTGEEGFNGSKIYGLAQCTPDMATATCRSCLGGIVGMMPKYFSGKQGGRVLGLRCNYRYEIYPFFDGVSLLQLPAASLGAPPAPSPAAVNVTPPATTTGTRRRGNTTGRVLAIALPIVAAILAAVVICFYIWKRKTERARKPSIADPTDPADIESIDSLILSISTLRVATNNFDDSNKLGEGGFGAVYKGVLPSDQEIAVKRLSQSSRQGIEELKNELVLVAKLQHKNLVRLLGVCLEEHEKLLVYEYMPNKSLDTILFGGYSSAFSTILIEAMCWIGGKD
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_07g0017840 | OsCMeo_07g0017840.02 | Chr07 | 20651745 | 20654473 | + | IsoSeq | ||
| CDS seq | atgaagaaactgaatcgtccaaatacagaaaaaaaatttatttttttggcaaaatttgtccaaattctacctgtttttgtcgataaccgttccattgtcgtggctattgaaaaaacctctagggacctgtttttggtgaaaatggcatttgtaaacctcgagttgtccatcgtgactgat |
|||||||
| Protein seq | MKKLNRPNTEKKFIFLAKFVQILPVFVDNRSIVVAIEKTSRDLFLVKMAFVNLELSIVTD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.699874 | 0.0 | 2.725205 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0537000 | RBH | 1.724079 | 1.268597 | 1.709922 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35300 | SBH | 0.060834 | 0.0 | 0.075297 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0537000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017980 | SBH | 0.0 | 4.960012 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017870 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017860 | RBH | 0.103705 | 1.116436 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017760 | RBH | 0.380633 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017870 | SBH | 5.590810 | 5.120667 | 2.246069 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0349900 | SBH | 0.235188 | 0.4765125 | 0.032501 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018360 | RBH | 0.0 | 0.040372 | 0.054509 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0358400 | SBH | 1.1841445 | 13.820534 | 1.580925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017610 | RBH | 0.0 | 0.052541 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017770 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017710 | SBH | 0.0 | 31.056480 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017990 | SBH | 1.133148 | 0.598885 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017780 | SBH | 0.0 | 1.197930 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017760 | SBH | 1.442547 | 0.0 | 0.836613 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017970 | SBH | 0.0 | 0.0 | 0.0 |
