Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0009720 | OGI:07028390 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:10310183-10312751 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggtatctcaagtgccatccaatggtgggatgagtggcagctgcgcattctcgcactgagcagcctacttgttcagtatatcctcctcgtcatggctcctcggcgtaagtttcctatgaaattctacctgagatacattatctggcttgcataccttagcagcgatgccctagcgatatatgctctcgcaacactcttcaatcgacataagaagcaggattatggccatgcacacaacacgagcatcctagaggtgctgtgggcacctatcttcctgatacaccttgctggacaggagagcataaccgcgtataacatcgaagataacgagctgtggacaaggcacgccctcacatcgctgtcccaaatcaccatagccatctatgtgttctgtaaatcatggccaggtggtgacaggaggttgcttcaggcagcaatcctgctcttcgtccctggtgttctcaagtgcttggaaaagccctgggctctcagtagtgcaagcattaatagtctagtgagctctcccaagaatgttcggaggacgacaaacagagaagtaaagaaagatccgattcaagattttatagacaaggtaaatgaatctcgtttggaggatggtcgctgggaagaatcaagctctcctgccgactttaagcccagtgagctatttgttgaccttgcatctccttcttccgatgatcggcttagtaaacttttgtcattcttacaacgtgaaggagatgaatcgtatattttgttgcagaaaagtctgtatgaaaccttcgatcttctttacaccaaagaaaagatgtttccaattattcttagtactctaaagagacaccagatttacaccaaagaaaagatgtttccaattattcttagtactctaaagagacaccagaatgatgacaataccaatgttgacaccgatgagggaaagaaagagcaacaaactttaaaagggttttgcggttcgatgctgcgattattacttacgtacttgtcctttgtagccatcggcctgttccaccaaagtcacagaaaagcttataatcacactgatgtcaaggttacatataccttgctttgttgtactgctgtcctagagttatgcggacctaccttacagaaaaacttgacctcagggcaagcaagggttcaaaaaacgagttttaatatgaacagccctaagtcggtcgggaaagtaaatcatgctaaacatgatgtccaagcgaagtcaaaggccaaaggaaagctaccagtatatggtatcatggatgacatggtctcccaatatagcctattaggatactttgtccgcaacagaaaacattccgtgataatgggtgttgcggaattcctcagttgcaaggattatctcgaccaacgttggagaatgaagtcctgttcctcctcgcgcaacattactaacttagttcttggacatgtgaaacgttggtggaacgatgaaataactaatgtttcctgttacaggaagttcaatgataacaggggccagtggactcttgaatctgaggagttccttcagcaactaggctggagcttagagggtgcattcgatgagagtgtccttctctggcatctcgccaccgatttctgctactaccacatctgtggatctcatgactgtgaacatgctacaaaaacgtgctttcaaggcacctctgatctcaaaagtgaaagtccaactttctgcgaagaatctattcaccaaggaagagctgttcattgccgagaaatgtccaactacatgatgtacctacttgttgtgaatcctgagatgctaatggcgggcagcaggcgaaacttattcacagatgcctacaaccaactgaagggcatgttcaacaagaagagtacaccactgaatgaaggagaacttgcagggacaataatcagcgaggtgcaggtgcatgtgcaacagccaatcaaggagaaaaccatcgaagacaagacaccagcaccatccaataaaacagggctcatagacgacgcttggtctatagctgaagtgctcctgaatttacatgacgaggagaagatgtggagagtgatcgaaggcgtgtgggtggagatgctctgcttttctgctgccagatgccgggggtacttgcacgctaagagccttggcaccggagtcgagttcctgagctatgtctggctgcttatgcattacatggggatggagaccttggcagagaagctggccagggcagagctcccaatcggagcatgctcaggtgattcacgcactacccatgctgaacactcctctggtaaagagcaggttgctggagcatcctccaacgatggcattacagttgttgtggacaaaaatgggtgatttatatattgcttaaaagaccaacccgttccagtatgctgcttttatttgcttgttgaatgcttatatgtatcagttttcttacgattcaatatcttatttgtgtcatatgtgctcattagtgtgctctgtgctgccacttataaataaatattttaccatgtgaacagtatgacagtataatagtatgtttaatgcc
More
|
||||||||||
| CDS seq | atgggtatctcaagtgccatccaatggtgggatgagtggcagctgcgcattctcgcactgagcagcctacttgttcagtatatcctcctcgtcatggctcctcggcgtaagtttcctatgaaattctacctgagatacattatctggcttgcataccttagcagcgatgccctagcgatatatgctctcgcaacactcttcaatcgacataagaagcaggattatggccatgcacacaacacgagcatcctagaggtgctgtgggcacctatcttcctgatacaccttgctggacaggagagcataaccgcgtataacatcgaagataacgagctgtggacaaggcacgccctcacatcgctgtcccaaatcaccatagccatctatgtgttctgtaaatcatggccaggtggtgacaggaggttgcttcaggcagcaatcctgctcttcgtccctggtgttctcaagtgcttggaaaagccctgggctctcagtagtgcaagcattaatagtctagtgagctctcccaagaatgttcggaggacgacaaacagagaagtaaagaaagatccgattcaagattttatagacaaggtaaatgaatctcgtttggaggatggtcgctgggaagaatcaagctctcctgccgactttaagcccagtgagctatttgttgaccttgcatctccttcttccgatgatcggcttagtaaacttttgtcattcttacaacgtgaaggagatgaatcgtatattttgttgcagaaaagtctgtatgaaaccttcgatcttctttacaccaaagaaaagatgtttccaattattcttagtactctaaagagacaccagatttacaccaaagaaaagatgtttccaattattcttagtactctaaagagacaccagaatgatgacaataccaatgttgacaccgatgagggaaagaaagagcaacaaactttaaaagggttttgcggttcgatgctgcgattattacttacgtacttgtcctttgtagccatcggcctgttccaccaaagtcacagaaaagcttataatcacactgatgtcaaggttacatataccttgctttgttgtactgctgtcctagagttatgcggacctaccttacagaaaaacttgacctcagggcaagcaagggttcaaaaaacgagttttaatatgaacagccctaagtcggtcgggaaagtaaatcatgctaaacatgatgtccaagcgaagtcaaaggccaaaggaaagctaccagtatatggtatcatggatgacatggtctcccaatatagcctattaggatactttgtccgcaacagaaaacattccgtgataatgggtgttgcggaattcctcagttgcaaggattatctcgaccaacgttggagaatgaagtcctgttcctcctcgcgcaacattactaacttagttcttggacatgtgaaacgttggtggaacgatgaaataactaatgtttcctgttacaggaagttcaatgataacaggggccagtggactcttgaatctgaggagttccttcagcaactaggctggagcttagagggtgcattcgatgagagtgtccttctctggcatctcgccaccgatttctgctactaccacatctgtggatctcatgactgtgaacatgctacaaaaacgtgctttcaaggcacctctgatctcaaaagtgaaagtccaactttctgcgaagaatctattcaccaaggaagagctgttcattgccgagaaatgtccaactacatgatgtacctacttgttgtgaatcctgagatgctaatggcgggcagcaggcgaaacttattcacagatgcctacaaccaactgaagggcatgttcaacaagaagagtacaccactgaatgaaggagaacttgcagggacaataatcagcgaggtgcaggtgcatgtgcaacagccaatcaaggagaaaaccatcgaagacaagacaccagcaccatccaataaaacagggctcatagacgacgcttggtctatagctgaagtgctcctgaatttacatgacgaggagaagatgtggagagtgatcgaaggcgtgtgggtggagatgctctgcttttctgctgccagatgccgggggtacttgcacgctaagagccttggcaccggagtcgagttcctgagctatgtctggctgcttatgcattacatggggatggagaccttggcagagaagctggccagggcagagctcccaatcggagcatgctcaggtgattcacgcactacccatgctgaacactcctctggtaaagagcaggttgctggagcatcctccaacgatggcattacagttgttgtggacaaaaatgggtga
More
|
||||||||||
| Protein seq | MGISSAIQWWDEWQLRILALSSLLVQYILLVMAPRRKFPMKFYLRYIIWLAYLSSDALAIYALATLFNRHKKQDYGHAHNTSILEVLWAPIFLIHLAGQESITAYNIEDNELWTRHALTSLSQITIAIYVFCKSWPGGDRRLLQAAILLFVPGVLKCLEKPWALSSASINSLVSSPKNVRRTTNREVKKDPIQDFIDKVNESRLEDGRWEESSSPADFKPSELFVDLASPSSDDRLSKLLSFLQREGDESYILLQKSLYETFDLLYTKEKMFPIILSTLKRHQIYTKEKMFPIILSTLKRHQNDDNTNVDTDEGKKEQQTLKGFCGSMLRLLLTYLSFVAIGLFHQSHRKAYNHTDVKVTYTLLCCTAVLELCGPTLQKNLTSGQARVQKTSFNMNSPKSVGKVNHAKHDVQAKSKAKGKLPVYGIMDDMVSQYSLLGYFVRNRKHSVIMGVAEFLSCKDYLDQRWRMKSCSSSRNITNLVLGHVKRWWNDEITNVSCYRKFNDNRGQWTLESEEFLQQLGWSLEGAFDESVLLWHLATDFCYYHICGSHDCEHATKTCFQGTSDLKSESPTFCEESIHQGRAVHCREMSNYMMYLLVVNPEMLMAGSRRNLFTDAYNQLKGMFNKKSTPLNEGELAGTIISEVQVHVQQPIKEKTIEDKTPAPSNKTGLIDDAWSIAEVLLNLHDEEKMWRVIEGVWVEMLCFSAARCRGYLHAKSLGTGVEFLSYVWLLMHYMGMETLAEKLARAELPIGACSGDSRTTHAEHSSGKEQVAGASSNDGITVVVDKNG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0009720 | OsLima_07g0009720.01 | Chr07 | 10310183 | 10312751 | + | NAM | ||
| CDS seq | atgggtatctcaagtgccatccaatggtgggatgagtggcagctgcgcattctcgcactgagcagcctacttgttcagtatatcctcctcgtcatggctcctcggcgtaagtttcctatgaaattctacctgagatacattatctggcttgcataccttagcagcgatgccctagcgatatatgctctcgcaacactcttcaatcgacataagaagcaggattatggccatgcacacaacacgagcatcctagaggtgctgtgggcacctatcttcctgatacaccttgctggacaggagagcataaccgcgtataacatcgaagataacgagctgtggacaaggcacgccctcacatcgctgtcccaaatcaccatagccatctatgtgttctgtaaatcatggccaggtggtgacaggaggttgcttcaggcagcaatcctgctcttcgtccctggtgttctcaagtgcttggaaaagccctgggctctcagtagtgcaagcattaatagtctagtgagctctcccaagaatgttcggaggacgacaaacagagaagtaaagaaagatccgattcaagattttatagacaaggtaaatgaatctcgtttggaggatggtcgctgggaagaatcaagctctcctgccgactttaagcccagtgagctatttgttgaccttgcatctccttcttccgatgatcggcttagtaaacttttgtcattcttacaacgtgaaggagatgaatcgtatattttgttgcagaaaagtctgtatgaaaccttcgatcttctttacaccaaagaaaagatgtttccaattattcttagtactctaaagagacaccagatttacaccaaagaaaagatgtttccaattattcttagtactctaaagagacaccagaatgatgacaataccaatgttgacaccgatgagggaaagaaagagcaacaaactttaaaagggttttgcggttcgatgctgcgattattacttacgtacttgtcctttgtagccatcggcctgttccaccaaagtcacagaaaagcttataatcacactgatgtcaaggttacatataccttgctttgttgtactgctgtcctagagttatgcggacctaccttacagaaaaacttgacctcagggcaagcaagggttcaaaaaacgagttttaatatgaacagccctaagtcggtcgggaaagtaaatcatgctaaacatgatgtccaagcgaagtcaaaggccaaaggaaagctaccagtatatggtatcatggatgacatggtctcccaatatagcctattaggatactttgtccgcaacagaaaacattccgtgataatgggtgttgcggaattcctcagttgcaaggattatctcgaccaacgttggagaatgaagtcctgttcctcctcgcgcaacattactaacttagttcttggacatgtgaaacgttggtggaacgatgaaataactaatgtttcctgttacaggaagttcaatgataacaggggccagtggactcttgaatctgaggagttccttcagcaactaggctggagcttagagggtgcattcgatgagagtgtccttctctggcatctcgccaccgatttctgctactaccacatctgtggatctcatgactgtgaacatgctacaaaaacgtgctttcaaggcacctctgatctcaaaagtgaaagtccaactttctgcgaagaatctattcaccaaggaagagctgttcattgccgagaaatgtccaactacatgatgtacctacttgttgtgaatcctgagatgctaatggcgggcagcaggcgaaacttattcacagatgcctacaaccaactgaagggcatgttcaacaagaagagtacaccactgaatgaaggagaacttgcagggacaataatcagcgaggtgcaggtgcatgtgcaacagccaatcaaggagaaaaccatcgaagacaagacaccagcaccatccaataaaacagggctcatagacgacgcttggtctatagctgaagtgctcctgaatttacatgacgaggagaagatgtggagagtgatcgaaggcgtgtgggtggagatgctctgcttttctgctgccagatgccgggggtacttgcacgctaagagccttggcaccggagtcgagttcctgagctatgtctggctgcttatgcattacatggggatggagaccttggcagagaagctggccagggcagagctcccaatcggagcatgctcaggtgattcacgcactacccatgctgaacactcctctggtaaagagcaggttgctggagcatcctccaacgatggcattacagttgttgtggacaaaaatgggtga
More
|
|||||||
| Protein seq | MGISSAIQWWDEWQLRILALSSLLVQYILLVMAPRRKFPMKFYLRYIIWLAYLSSDALAIYALATLFNRHKKQDYGHAHNTSILEVLWAPIFLIHLAGQESITAYNIEDNELWTRHALTSLSQITIAIYVFCKSWPGGDRRLLQAAILLFVPGVLKCLEKPWALSSASINSLVSSPKNVRRTTNREVKKDPIQDFIDKVNESRLEDGRWEESSSPADFKPSELFVDLASPSSDDRLSKLLSFLQREGDESYILLQKSLYETFDLLYTKEKMFPIILSTLKRHQIYTKEKMFPIILSTLKRHQNDDNTNVDTDEGKKEQQTLKGFCGSMLRLLLTYLSFVAIGLFHQSHRKAYNHTDVKVTYTLLCCTAVLELCGPTLQKNLTSGQARVQKTSFNMNSPKSVGKVNHAKHDVQAKSKAKGKLPVYGIMDDMVSQYSLLGYFVRNRKHSVIMGVAEFLSCKDYLDQRWRMKSCSSSRNITNLVLGHVKRWWNDEITNVSCYRKFNDNRGQWTLESEEFLQQLGWSLEGAFDESVLLWHLATDFCYYHICGSHDCEHATKTCFQGTSDLKSESPTFCEESIHQGRAVHCREMSNYMMYLLVVNPEMLMAGSRRNLFTDAYNQLKGMFNKKSTPLNEGELAGTIISEVQVHVQQPIKEKTIEDKTPAPSNKTGLIDDAWSIAEVLLNLHDEEKMWRVIEGVWVEMLCFSAARCRGYLHAKSLGTGVEFLSYVWLLMHYMGMETLAEKLARAELPIGACSGDSRTTHAEHSSGKEQVAGASSNDGITVVVDKNG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0268800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g16600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0268800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009820 | RBH | 0.073720 | 5.600596 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0009940 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009770 | RBH | 0.0 | 1.344135 | 0.440153 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0174400 | RBH | 0.033234 | 1.691934 | 0.0539015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010230 | RBH | 0.037663 | 0.053339 | 0.047974 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0175400 | SBH | 0 | 0 | 0.249446 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009780 | SBH | 0.0 | 0.051810 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009890 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0009760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G009750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0009690 | SBH | 0.0 | 0.0 | 0.0 |
