Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g16600 | OGI:07028390 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:9738287-9740798 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTATCTCAAGTGCCATCCAATGGTGGGATGAGTGGCAGCTGCGCATTCTCGCACTGAGCAGCCTACTTGTTCAGTATATCCTCCTCGTCATGGCTCCTCGGCGTAAGTTTCCTATGAAATTCTACCTGAGATACATTATCTGGCTTGCATACCTTAGCAGCGATGCCCTAGCGATATATGCTCTCGCAACACTCTTCAATCGACATAAGAAGCAGGATTATGGCCATGCACACAACACGAGCATCCTAGAGGTGCTGTGGGCACCTATCTTCCTGATACACCTTGCTGGACAGGACAGCATAACCGCGTATAACATCGAAGATAACGAGCTGTGGACAAGGCACGCCCTCACATCGCTGTCCCAAATCACCATAGCCATCTATGTGTTCTGTAAATCATGGCCAGGTGGTGACAGGAGGTTGCTTCAGGCAGCAATCCTGCTCTTCGTCCCTGGTGTTCTCAAGTGCTTGGAAAAGCCCTGGGCTCTCAGTAGTGCAAGCATTAATAGTCTAGTGAGCTCTCCCAAGAATGTTCGGAGGACGACAAACAGAGAAGTAAAGAAAGATCCGATTCAAGATTTTATAGACAAGGTAAATGAATCTCGTTTGGAGGATGGTCGCTGGGAAGAATCAAGCTCTCCTGCCGACTTTAAGCCCAGTGAGCTATTTGTTGACCTTGCATCTCCTTCTTCCGATGATCGGCTTAGTAAACTTTTGTCATTCTTACAACGTGAAGGAGATGAATCGTATATTTTGTTGCAGAAAAGTCTGTATGAAACCTTCGATCTTCTTTACACCAAAGAAAAGATGTTTCCAATTATTCTTAGTGCTCTAAAGAGACAACAGAATTATGTGAATACCAATGTTGACACCGATGAGGGAAAGAAAGAGCAAGAAACTTTAAAAGGGTTTTGCGGTTCGATGCTGCGAGGATTACTTCCGTACTTGTCCTTTGTAGCCATCGGCCTGTTCCACCAAAGTCACAGAAAAGCTTATAATCACACTGATGTCAAGGTTACATATACCTTGCTTTGTTGTACTGCTGTCCTAGAGTTATACGGACCTACCTTACAGAAAATCTTGACCTCAGGGCAAGCAAGGGTTCAAAAAACGAGTTTTAATATGAACAGCCCTAAGTCGGTCGGGAAAGTAAATCATGCTAAACATGATGTCCAAGCGAAGTCAAAGGCCAAAGGAAAGCTACCAGTATATGATATCATGGATGACATGGTCTCCCAATATAGCCTATTAGGATACTTTGTCCGCAACAGAAAACATTCCGTGATAATGGGTGTTGCGGAATTCCTCAGTTGCAAGGATTATCTCGACCAACGTTGGAGAATGAAGTCCTGTTCCTCCTCGCGCAACATTACTAACTTAGTTCTTGGACATGTGAAACGTTGGTGGAACGATGAAATAACTAATGTTTCCTGTTACAGGAAGTTCAATGATAACAGGGGCCAGTGGACTCTTGAATCTGAGGTGTTCCTTCAGCAACTAGGCTGGAGCTTAGAGGGTGCATTCGATGAGAGTGTCCTTCTCTGGCATCTCGCCACCGATTTCTGCTACTACCACATCTGTGGATCTCATGACTGTGAACATGCTACAAAAACGTGCTTTCAAGGCACCTCTGATCTCAAAAGTGAAAGTCCAACTTTCTGCGAAGAATCTATTCACCAAGGAAGAGCTGTTCATTGCCGAGAAATGTCCAACTACATGATGTACCTACTTGTTGTGAATCCTGAGATGCTAATGGCGGGCAGCAGGCGAAACTTATTCACAGATGCCTACAACCAACTGAAGGGCATGTTCAACAAGAAGAGTACACCACTGAATGAAGGAGAACTTGCAGGGACAATAATCAGTGAGGTGCAGGTGCATGTGCAACAGCCAATCAAGGAGAAAACCATCGAAGACAAGACACCAGCACCATCCAATAAAACAGGGCTCATAGACGACGCTTGGTCTATAGCTGAAGTGCTCCTGAATTTACATGACGAGGAGAAGATGTGGAGAGTGATCGAAGGCGTGTGGGTGGAGATGCTCTGCTTTTCTGCTGCCAGATGCCGGGGGTACTTGCACGCTAAGAGCCTTGGCACCGGAGTCGAGTTCCTGAGCTATGTCTGGCTGCTTATGCATTACATGGGGATGGAGACCTTGGCAGAGAAGCTGGCCAGGGCAGAGCTCCCAAACGGAGCATGCTCAGGTGATTCACGCACTACCCATGCTGAACACTCCTCTGGTAAAGAGCAGGTTGCTGGAGCATCCTCCAACGATGGCATTACAGTTGTTGTGGACAAAAATGGGTGATTTATATATTGCTTAAAAGACCAACCCGTTCCAGTATGCTGCTTTTATTTGCTTGTTGAATGCTTATATGTATCAGTTTTCTTACGATTCAATATCTTATTTGTGTCATATGTGCTCATTAGTGTGCTCTGTGCTGCCACTTATAAATAAATATTTTACCATGTGAACAGTATGACAGTATAATAGTATGTTTAATGCC
More
|
||||||||||
| CDS seq | ATGGGTATCTCAAGTGCCATCCAATGGTGGGATGAGTGGCAGCTGCGCATTCTCGCACTGAGCAGCCTACTTGTTCAGTATATCCTCCTCGTCATGGCTCCTCGGCGTAAGTTTCCTATGAAATTCTACCTGAGATACATTATCTGGCTTGCATACCTTAGCAGCGATGCCCTAGCGATATATGCTCTCGCAACACTCTTCAATCGACATAAGAAGCAGGATTATGGCCATGCACACAACACGAGCATCCTAGAGGTGCTGTGGGCACCTATCTTCCTGATACACCTTGCTGGACAGGACAGCATAACCGCGTATAACATCGAAGATAACGAGCTGTGGACAAGGCACGCCCTCACATCGCTGTCCCAAATCACCATAGCCATCTATGTGTTCTGTAAATCATGGCCAGGTGGTGACAGGAGGTTGCTTCAGGCAGCAATCCTGCTCTTCGTCCCTGGTGTTCTCAAGTGCTTGGAAAAGCCCTGGGCTCTCAGTAGTGCAAGCATTAATAGTCTAGTGAGCTCTCCCAAGAATGTTCGGAGGACGACAAACAGAGAAGTAAAGAAAGATCCGATTCAAGATTTTATAGACAAGGTAAATGAATCTCGTTTGGAGGATGGTCGCTGGGAAGAATCAAGCTCTCCTGCCGACTTTAAGCCCAGTGAGCTATTTGTTGACCTTGCATCTCCTTCTTCCGATGATCGGCTTAGTAAACTTTTGTCATTCTTACAACGTGAAGGAGATGAATCGTATATTTTGTTGCAGAAAAGTCTGTATGAAACCTTCGATCTTCTTTACACCAAAGAAAAGATGTTTCCAATTATTCTTAGTGCTCTAAAGAGACAACAGAATTATGTGAATACCAATGTTGACACCGATGAGGGAAAGAAAGAGCAAGAAACTTTAAAAGGGTTTTGCGGTTCGATGCTGCGAGGATTACTTCCGTACTTGTCCTTTGTAGCCATCGGCCTGTTCCACCAAAGTCACAGAAAAGCTTATAATCACACTGATGTCAAGGTTACATATACCTTGCTTTGTTGTACTGCTGTCCTAGAGTTATACGGACCTACCTTACAGAAAATCTTGACCTCAGGGCAAGCAAGGGTTCAAAAAACGAGTTTTAATATGAACAGCCCTAAGTCGGTCGGGAAAGTAAATCATGCTAAACATGATGTCCAAGCGAAGTCAAAGGCCAAAGGAAAGCTACCAGTATATGATATCATGGATGACATGGTCTCCCAATATAGCCTATTAGGATACTTTGTCCGCAACAGAAAACATTCCGTGATAATGGGTGTTGCGGAATTCCTCAGTTGCAAGGATTATCTCGACCAACGTTGGAGAATGAAGTCCTGTTCCTCCTCGCGCAACATTACTAACTTAGTTCTTGGACATGTGAAACGTTGGTGGAACGATGAAATAACTAATGTTTCCTGTTACAGGAAGTTCAATGATAACAGGGGCCAGTGGACTCTTGAATCTGAGGTGTTCCTTCAGCAACTAGGCTGGAGCTTAGAGGGTGCATTCGATGAGAGTGTCCTTCTCTGGCATCTCGCCACCGATTTCTGCTACTACCACATCTGTGGATCTCATGACTGTGAACATGCTACAAAAACGTGCTTTCAAGGCACCTCTGATCTCAAAAGTGAAAGTCCAACTTTCTGCGAAGAATCTATTCACCAAGGAAGAGCTGTTCATTGCCGAGAAATGTCCAACTACATGATGTACCTACTTGTTGTGAATCCTGAGATGCTAATGGCGGGCAGCAGGCGAAACTTATTCACAGATGCCTACAACCAACTGAAGGGCATGTTCAACAAGAAGAGTACACCACTGAATGAAGGAGAACTTGCAGGGACAATAATCAGTGAGGTGCAGGTGCATGTGCAACAGCCAATCAAGGAGAAAACCATCGAAGACAAGACACCAGCACCATCCAATAAAACAGGGCTCATAGACGACGCTTGGTCTATAGCTGAAGTGCTCCTGAATTTACATGACGAGGAGAAGATGTGGAGAGTGATCGAAGGCGTGTGGGTGGAGATGCTCTGCTTTTCTGCTGCCAGATGCCGGGGGTACTTGCACGCTAAGAGCCTTGGCACCGGAGTCGAGTTCCTGAGCTATGTCTGGCTGCTTATGCATTACATGGGGATGGAGACCTTGGCAGAGAAGCTGGCCAGGGCAGAGCTCCCAAACGGAGCATGCTCAGGTGATTCACGCACTACCCATGCTGAACACTCCTCTGGTAAAGAGCAGGTTGCTGGAGCATCCTCCAACGATGGCATTACAGTTGTTGTGGACAAAAATGGGTGA
More
|
||||||||||
| Protein seq | MGISSAIQWWDEWQLRILALSSLLVQYILLVMAPRRKFPMKFYLRYIIWLAYLSSDALAIYALATLFNRHKKQDYGHAHNTSILEVLWAPIFLIHLAGQDSITAYNIEDNELWTRHALTSLSQITIAIYVFCKSWPGGDRRLLQAAILLFVPGVLKCLEKPWALSSASINSLVSSPKNVRRTTNREVKKDPIQDFIDKVNESRLEDGRWEESSSPADFKPSELFVDLASPSSDDRLSKLLSFLQREGDESYILLQKSLYETFDLLYTKEKMFPIILSALKRQQNYVNTNVDTDEGKKEQETLKGFCGSMLRGLLPYLSFVAIGLFHQSHRKAYNHTDVKVTYTLLCCTAVLELYGPTLQKILTSGQARVQKTSFNMNSPKSVGKVNHAKHDVQAKSKAKGKLPVYDIMDDMVSQYSLLGYFVRNRKHSVIMGVAEFLSCKDYLDQRWRMKSCSSSRNITNLVLGHVKRWWNDEITNVSCYRKFNDNRGQWTLESEVFLQQLGWSLEGAFDESVLLWHLATDFCYYHICGSHDCEHATKTCFQGTSDLKSESPTFCEESIHQGRAVHCREMSNYMMYLLVVNPEMLMAGSRRNLFTDAYNQLKGMFNKKSTPLNEGELAGTIISEVQVHVQQPIKEKTIEDKTPAPSNKTGLIDDAWSIAEVLLNLHDEEKMWRVIEGVWVEMLCFSAARCRGYLHAKSLGTGVEFLSYVWLLMHYMGMETLAEKLARAELPNGACSGDSRTTHAEHSSGKEQVAGASSNDGITVVVDKNG |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g16600 | LOC_Os07g16600.1 | Chr07 | 9738287 | 9740798 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTATCTCAAGTGCCATCCAATGGTGGGATGAGTGGCAGCTGCGCATTCTCGCACTGAGCAGCCTACTTGTTCAGTATATCCTCCTCGTCATGGCTCCTCGGCGTAAGTTTCCTATGAAATTCTACCTGAGATACATTATCTGGCTTGCATACCTTAGCAGCGATGCCCTAGCGATATATGCTCTCGCAACACTCTTCAATCGACATAAGAAGCAGGATTATGGCCATGCACACAACACGAGCATCCTAGAGGTGCTGTGGGCACCTATCTTCCTGATACACCTTGCTGGACAGGACAGCATAACCGCGTATAACATCGAAGATAACGAGCTGTGGACAAGGCACGCCCTCACATCGCTGTCCCAAATCACCATAGCCATCTATGTGTTCTGTAAATCATGGCCAGGTGGTGACAGGAGGTTGCTTCAGGCAGCAATCCTGCTCTTCGTCCCTGGTGTTCTCAAGTGCTTGGAAAAGCCCTGGGCTCTCAGTAGTGCAAGCATTAATAGTCTAGTGAGCTCTCCCAAGAATGTTCGGAGGACGACAAACAGAGAAGTAAAGAAAGATCCGATTCAAGATTTTATAGACAAGGTAAATGAATCTCGTTTGGAGGATGGTCGCTGGGAAGAATCAAGCTCTCCTGCCGACTTTAAGCCCAGTGAGCTATTTGTTGACCTTGCATCTCCTTCTTCCGATGATCGGCTTAGTAAACTTTTGTCATTCTTACAACGTGAAGGAGATGAATCGTATATTTTGTTGCAGAAAAGTCTGTATGAAACCTTCGATCTTCTTTACACCAAAGAAAAGATGTTTCCAATTATTCTTAGTGCTCTAAAGAGACAACAGAATTATGTGAATACCAATGTTGACACCGATGAGGGAAAGAAAGAGCAAGAAACTTTAAAAGGGTTTTGCGGTTCGATGCTGCGAGGATTACTTCCGTACTTGTCCTTTGTAGCCATCGGCCTGTTCCACCAAAGTCACAGAAAAGCTTATAATCACACTGATGTCAAGGTTACATATACCTTGCTTTGTTGTACTGCTGTCCTAGAGTTATACGGACCTACCTTACAGAAAATCTTGACCTCAGGGCAAGCAAGGGTTCAAAAAACGAGTTTTAATATGAACAGCCCTAAGTCGGTCGGGAAAGTAAATCATGCTAAACATGATGTCCAAGCGAAGTCAAAGGCCAAAGGAAAGCTACCAGTATATGATATCATGGATGACATGGTCTCCCAATATAGCCTATTAGGATACTTTGTCCGCAACAGAAAACATTCCGTGATAATGGGTGTTGCGGAATTCCTCAGTTGCAAGGATTATCTCGACCAACGTTGGAGAATGAAGTCCTGTTCCTCCTCGCGCAACATTACTAACTTAGTTCTTGGACATGTGAAACGTTGGTGGAACGATGAAATAACTAATGTTTCCTGTTACAGGAAGTTCAATGATAACAGGGGCCAGTGGACTCTTGAATCTGAGGTGTTCCTTCAGCAACTAGGCTGGAGCTTAGAGGGTGCATTCGATGAGAGTGTCCTTCTCTGGCATCTCGCCACCGATTTCTGCTACTACCACATCTGTGGATCTCATGACTGTGAACATGCTACAAAAACGTGCTTTCAAGGCACCTCTGATCTCAAAAGTGAAAGTCCAACTTTCTGCGAAGAATCTATTCACCAAGGAAGAGCTGTTCATTGCCGAGAAATGTCCAACTACATGATGTACCTACTTGTTGTGAATCCTGAGATGCTAATGGCGGGCAGCAGGCGAAACTTATTCACAGATGCCTACAACCAACTGAAGGGCATGTTCAACAAGAAGAGTACACCACTGAATGAAGGAGAACTTGCAGGGACAATAATCAGTGAGGTGCAGGTGCATGTGCAACAGCCAATCAAGGAGAAAACCATCGAAGACAAGACACCAGCACCATCCAATAAAACAGGGCTCATAGACGACGCTTGGTCTATAGCTGAAGTGCTCCTGAATTTACATGACGAGGAGAAGATGTGGAGAGTGATCGAAGGCGTGTGGGTGGAGATGCTCTGCTTTTCTGCTGCCAGATGCCGGGGGTACTTGCACGCTAAGAGCCTTGGCACCGGAGTCGAGTTCCTGAGCTATGTCTGGCTGCTTATGCATTACATGGGGATGGAGACCTTGGCAGAGAAGCTGGCCAGGGCAGAGCTCCCAAACGGAGCATGCTCAGGTGATTCACGCACTACCCATGCTGAACACTCCTCTGGTAAAGAGCAGGTTGCTGGAGCATCCTCCAACGATGGCATTACAGTTGTTGTGGACAAAAATGGGTGA
More
|
|||||||
| Protein seq | MGISSAIQWWDEWQLRILALSSLLVQYILLVMAPRRKFPMKFYLRYIIWLAYLSSDALAIYALATLFNRHKKQDYGHAHNTSILEVLWAPIFLIHLAGQDSITAYNIEDNELWTRHALTSLSQITIAIYVFCKSWPGGDRRLLQAAILLFVPGVLKCLEKPWALSSASINSLVSSPKNVRRTTNREVKKDPIQDFIDKVNESRLEDGRWEESSSPADFKPSELFVDLASPSSDDRLSKLLSFLQREGDESYILLQKSLYETFDLLYTKEKMFPIILSALKRQQNYVNTNVDTDEGKKEQETLKGFCGSMLRGLLPYLSFVAIGLFHQSHRKAYNHTDVKVTYTLLCCTAVLELYGPTLQKILTSGQARVQKTSFNMNSPKSVGKVNHAKHDVQAKSKAKGKLPVYDIMDDMVSQYSLLGYFVRNRKHSVIMGVAEFLSCKDYLDQRWRMKSCSSSRNITNLVLGHVKRWWNDEITNVSCYRKFNDNRGQWTLESEVFLQQLGWSLEGAFDESVLLWHLATDFCYYHICGSHDCEHATKTCFQGTSDLKSESPTFCEESIHQGRAVHCREMSNYMMYLLVVNPEMLMAGSRRNLFTDAYNQLKGMFNKKSTPLNEGELAGTIISEVQVHVQQPIKEKTIEDKTPAPSNKTGLIDDAWSIAEVLLNLHDEEKMWRVIEGVWVEMLCFSAARCRGYLHAKSLGTGVEFLSYVWLLMHYMGMETLAEKLARAELPNGACSGDSRTTHAEHSSGKEQVAGASSNDGITVVVDKNG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0268800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g16740 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0268800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009820 | RBH | 0.073720 | 5.600596 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009770 | RBH | 0.0 | 1.344135 | 0.440153 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0174400 | RBH | 0.033234 | 1.691934 | 0.0539015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010230 | RBH | 0.037663 | 0.053339 | 0.047974 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0171600 | RBH | 0.263843 | 2.853408 | 0.0828635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009750 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009890 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0009760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G009750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
