Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0005300 | OGI:07013430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:4793476-4796427 | ||||||||
| Gene Symbol | WNK3, OsWNK3 | ||||||||||
| DNA seq | gtaccccttggataagaatgccaccctaatatttcttctttgaataagaggcgtaccaaatatgaatgaagaacatatgcatctttcctgattgcactttcttgcactactgatttatggtcagagaatgctagatacagccatgcatgtaactaactgaagccaatgaagattggaagtaattgcacttggcctacctaaactgtaccctatcttcttcagattcatagcacagtcacaaaacgttatactacatctttttcagtttcttccctacaatatatgctaaatctctgaaaaaaagacgagcaaatccaatcttgaaactgtagatttactttgtcagaagggcatgtcgaacgtcagtagcattgttcaacagtacagactttgttgctcttgcaatgtgtcggcaaggtaacctctgaaagtgagcagcggctgatcgagattgctgtcagcaattcccccctcacaatgagcaattccccctcacaatgatcatgaatcctttgagctaccatggtcatgatcatggtggcggcaccgactcgcgccattgctcaaatccaagaacccatcaatggttgtaaacatcagcgtcgaattgctcgatctttggatgttcatcatcatcatactgaattactgatcatggctgttctgaaccttgtactgtgccatcttgtgcaatgccattgatgttcatgacctccttgtccttgcccatggcgtgctgctcatggttgctgcctccggtgtcagaggagctcccctgcaaatgctgctcctcttcgtcgtcgtcggcttggaacgtgatctcctcaaaccggccgtgcagctcggcgcaccgcctgcagccatggcgctccgccgccgccgccgatgacataaagtcgacgagcgagccgcaggacgacgacgacgacgacgccgccggccggcagttcttgcagcaggcggcggcggcgccgcccggcgcgtccggatcatcgccgccgccgacgagatcgtcgtcgtcgtcgtcgtccgtcgctggacccggcctccagcccggcaccagcgcggcgaccttgccgtcgatcagctgggcgatgcgagtcacctcgtggtcggtgatgtccagctcggcgaccatctccgccgccacggtcatcgccgtgtcggcctcggtgtcgaaccggaagcagattatccggccacgccctgccacaattcagctcgaattcagacgaaattcgcccccacatttgacatcattttgtattataaatcaaatcaaatttgaacacccgccagttcaaaaatgcaacgatcacgtacctgtgccgttcttgtcggcgatgcgcaggccgaggtagacgccgccgtcgtccgtcctcctccccttgatggtgatgtccacgccaccgacacgctcgtcggcgtcggcggcggcggcgtcgtcgtcgtcctcgtcgaacagcatgtggatgtcgcggagccagttgtcaccgtcgtcgtcccccggctgcacggccgcgtccacgtcgttgtcgccgacgctattcgacggcgacaagccgccattgctgcaggcatggtggtcgtcgatgcaagcaggctggtgcaggtagttgtacatcagattgtagtagccaacgccaacaccgccatgtccatcgccgccgtcgccggagaagaagccatcatcctcaagcggcagcaggaacgggtcgtcgagcagctccctcgccgccggccgccgcgccgccggggcgaggcaccgttcgatgaattgcctcaccaccgggtcgctcaccctgtacaacgccgcgggcttgatcccctgatcagaaacacgcattctcttgatcaaatcgtgtccaagaattcacgagaaattctgtggtgatcagatcatacggagatgactcgcttgtagatttggatgggattggagcactcgctgtaggggtaatcgagggtgaccatctcgaggacgcacatgccgaaggagtagacgtcggcgagctcgtcgtaggactcgtcgtacacctcgggagccatgaactccggcgtgccgacgcagcgggcgtggccgccgccgcggcggaacgcggcgaggccgaggtcgccgatcttgacctcgccctggttgccgttgacgaagatgttgtcgcacttgaggtcgcgatggatgatgggcggcgagtgggcgtggaggtaggcgaggccgtcgaggatctgcgcgcaccagcgccgcaccgccgccgcgctcacccgccggtgcctctccctgtactggcggagcgtgccggagacgaagagctcggtgacgaagttgagggcgcggcgcggcgcgtccacccagtaggcgtggaggcgcacgatgccgcggtggcggagcgcggcgaggaggtggacctcgccgtagaaccgctccagctcgccgccgccccgcacgacgtcgcgcagccgcacctggttccacgccacctccactcccctccactcatcgaaccccctatacctgcacccgaaaaatcattccaaaatcaatcaaacactcaaattctaatcaagaaacacaatcaaacagaggattaaactaatttaggagaataaattggatcatctgatgaacttacacaatctttgacgatcccttgccaagaatctcattgaactgcagagagagagaggaagcattaagaaacaaggtaagaagaagctggaggaagaagacgatgagatgggattagtagatgattactctgccatatcttccagtgggatcaacctcggcatagccagcctcagcgaggaggacgccatggccatggccattgctctgctgctgcagggctcccatcattctacacacactctgctcagctcagcagcaacacatctccattgatccactcaagaagaactcgtgagcgtggcacgtcgatctcgaggagatgg
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| CDS seq | atgatgggagccctgcagcagcagagcaatggccatggccatggcgtcctcctcgctgaggctggctatgccgaggttgatcccactggaagatatggcagattcaatgagattcttggcaagggatcgtcaaagattgtgtatagggggttcgatgagtggaggggagtggaggtggcgtggaaccaggtgcggctgcgcgacgtcgtgcggggcggcggcgagctggagcggttctacggcgaggtccacctcctcgccgcgctccgccaccgcggcatcgtgcgcctccacgcctactgggtggacgcgccgcgccgcgccctcaacttcgtcaccgagctcttcgtctccggcacgctccgccagtacagggagaggcaccggcgggtgagcgcggcggcggtgcggcgctggtgcgcgcagatcctcgacggcctcgcctacctccacgcccactcgccgcccatcatccatcgcgacctcaagtgcgacaacatcttcgtcaacggcaaccagggcgaggtcaagatcggcgacctcggcctcgccgcgttccgccgcggcggcggccacgcccgctgcgtcggcacgccggagttcatggctcccgaggtgtacgacgagtcctacgacgagctcgccgacgtctactccttcggcatgtgcgtcctcgagatggtcaccctcgattacccctacagcgagtgctccaatcccatccaaatctacaagcgagtcatctccgggatcaagcccgcggcgttgtacagggtgagcgacccggtggtgaggcaattcatcgaacggtgcctcgccccggcggcgcggcggccggcggcgagggagctgctcgacgacccgttcctgctgccgcttgaggatgatggcttcttctccggcgacggcggcgatggacatggcggtgttggcgttggctactacaatctgatgtacaactacctgcaccagcctgcttgcatcgacgaccaccatgcctgcagcaatggcggcttgtcgccgtcgaatagcgtcggcgacaacgacgtggacgcggccgtgcagccgggggacgacgacggtgacaactggctccgcgacatccacatgctgttcgacgaggacgacgacgacgccgccgccgccgacgccgacgagcgtgtcggtggcgtggacatcaccatcaaggggaggaggacggacgacggcggcgtctacctcggcctgcgcatcgccgacaagaacggcacagggcgtggccggataatctgcttccggttcgacaccgaggccgacacggcgatgaccgtggcggcggagatggtcgccgagctggacatcaccgaccacgaggtgactcgcatcgcccagctgatcgacggcaaggtcgccgcgctggtgccgggctggaggccgggtccagcgacggacgacgacgacgacgacgatctcgtcggcggcggcgatgatccggacgcgccgggcggcgccgccgccgcctgctgcaagaactgccggccggcggcgtcgtcgtcgtcgtcgtcctgcggctcgctcgtcgactttatgtcatcggcggcggcggcggagcgccatggctgcaggcggtgcgccgagctgcacggccggtttgaggagatcacgttccaagccgacgacgacgaagaggagcagcatttgcaggggagctcctctgacaccggaggcagcaaccatgagcagcacgccatgggcaaggacaaggaggtcatgaacatcaatggcattgcacaagatggcacagtacaaggttcagaacagccatga
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| Protein seq | MMGALQQQSNGHGHGVLLAEAGYAEVDPTGRYGRFNEILGKGSSKIVYRGFDEWRGVEVAWNQVRLRDVVRGGGELERFYGEVHLLAALRHRGIVRLHAYWVDAPRRALNFVTELFVSGTLRQYRERHRRVSAAAVRRWCAQILDGLAYLHAHSPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAFRRGGGHARCVGTPEFMAPEVYDESYDELADVYSFGMCVLEMVTLDYPYSECSNPIQIYKRVISGIKPAALYRVSDPVVRQFIERCLAPAARRPAARELLDDPFLLPLEDDGFFSGDGGDGHGGVGVGYYNLMYNYLHQPACIDDHHACSNGGLSPSNSVGDNDVDAAVQPGDDDGDNWLRDIHMLFDEDDDDAAAADADERVGGVDITIKGRRTDDGGVYLGLRIADKNGTGRGRIICFRFDTEADTAMTVAAEMVAELDITDHEVTRIAQLIDGKVAALVPGWRPGPATDDDDDDDLVGGGDDPDAPGGAAAACCKNCRPAASSSSSSCGSLVDFMSSAAAAERHGCRRCAELHGRFEEITFQADDDEEEQHLQGSSSDTGGSNHEQHAMGKDKEVMNINGIAQDGTVQGSEQP |
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| Function | Probable serine/threonine-protein kinase WNK3 [UniProtKB/Swiss-Prot:Q0D847] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0005300 | OsLima_07g0005300.03 | Chr07 | 4793656 | 4796427 | - | NAM | ||
| CDS seq | atgatgggagccctgcagcagcagagcaatggccatggccatggcgtcctcctcgctgaggctggctatgccgaggttgatcccactggaagatatggcagattcaatgagattcttggcaagggatcgtcaaagattgtgtatagggggttcgatgagtggaggggagtggaggtggcgtggaaccaggtgcggctgcgcgacgtcgtgcggggcggcggcgagctggagcggttctacggcgaggtccacctcctcgccgcgctccgccaccgcggcatcgtgcgcctccacgcctactgggtggacgcgccgcgccgcgccctcaacttcgtcaccgagctcttcgtctccggcacgctccgccagtacagggagaggcaccggcgggtgagcgcggcggcggtgcggcgctggtgcgcgcagatcctcgacggcctcgcctacctccacgcccactcgccgcccatcatccatcgcgacctcaagtgcgacaacatcttcgtcaacggcaaccagggcgaggtcaagatcggcgacctcggcctcgccgcgttccgccgcggcggcggccacgcccgctgcgtcggcacgccggagttcatggctcccgaggtgtacgacgagtcctacgacgagctcgccgacgtctactccttcggcatgtgcgtcctcgagatggtcaccctcgattacccctacagcgagtgctccaatcccatccaaatctacaagcgagtcatctccgggatcaagcccgcggcgttgtacagggtgagcgacccggtggtgaggcaattcatcgaacggtgcctcgccccggcggcgcggcggccggcggcgagggagctgctcgacgacccgttcctgctgccgcttgaggatgatggcttcttctccggcgacggcggcgatggacatggcggtgttggcgttggctactacaatctgatgtacaactacctgcaccagcctgcttgcatcgacgaccaccatgcctgcagcaatggcggcttgtcgccgtcgaatagcgtcggcgacaacgacgtggacgcggccgtgcagccgggggacgacgacggtgacaactggctccgcgacatccacatgctgttcgacgaggacgacgacgacgccgccgccgccgacgccgacgagcgtgtcggtggcgtggacatcaccatcaaggggaggaggacggacgacggcggcgtctacctcggcctgcgcatcgccgacaagaacggcacagggcgtggccggataatctgcttccggttcgacaccgaggccgacacggcgatgaccgtggcggcggagatggtcgccgagctggacatcaccgaccacgaggtgactcgcatcgcccagctgatcgacggcaaggtcgccgcgctggtgccgggctggaggccgggtccagcgacggacgacgacgacgacgacgatctcgtcggcggcggcgatgatccggacgcgccgggcggcgccgccgccgcctgctgcaagaactgccggccggcggcgtcgtcgtcgtcgtcgtcctgcggctcgctcgtcgactttatgtcatcggcggcggcggcggagcgccatggctgcaggcggtgcgccgagctgcacggccggtttgaggagatcacgttccaagccgacgacgacgaagaggagcagcatttgcaggggagctcctctgacaccggaggcagcaaccatgagcagcacgccatgggcaaggacaaggaggtcatgaacatcaatggcattgcacaagatggcacagtacaaggttcagaacagccatga
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| Protein seq | MMGALQQQSNGHGHGVLLAEAGYAEVDPTGRYGRFNEILGKGSSKIVYRGFDEWRGVEVAWNQVRLRDVVRGGGELERFYGEVHLLAALRHRGIVRLHAYWVDAPRRALNFVTELFVSGTLRQYRERHRRVSAAAVRRWCAQILDGLAYLHAHSPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAFRRGGGHARCVGTPEFMAPEVYDESYDELADVYSFGMCVLEMVTLDYPYSECSNPIQIYKRVISGIKPAALYRVSDPVVRQFIERCLAPAARRPAARELLDDPFLLPLEDDGFFSGDGGDGHGGVGVGYYNLMYNYLHQPACIDDHHACSNGGLSPSNSVGDNDVDAAVQPGDDDGDNWLRDIHMLFDEDDDDAAAADADERVGGVDITIKGRRTDDGGVYLGLRIADKNGTGRGRIICFRFDTEADTAMTVAAEMVAELDITDHEVTRIAQLIDGKVAALVPGWRPGPATDDDDDDDLVGGGDDPDAPGGAAAACCKNCRPAASSSSSSCGSLVDFMSSAAAAERHGCRRCAELHGRFEEITFQADDDEEEQHLQGSSSDTGGSNHEQHAMGKDKEVMNINGIAQDGTVQGSEQP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0005300 | OsLima_07g0005300.02 | Chr07 | 4793476 | 4796427 | - | NAM | ||
| CDS seq | atgcgtgtttctgatcaggggatcaagcccgcggcgttgtacagggtgagcgacccggtggtgaggcaattcatcgaacggtgcctcgccccggcggcgcggcggccggcggcgagggagctgctcgacgacccgttcctgctgccgcttgaggatgatggcttcttctccggcgacggcggcgatggacatggcggtgttggcgttggctactacaatctgatgtacaactacctgcaccagcctgcttgcatcgacgaccaccatgcctgcagcaatggcggcttgtcgccgtcgaatagcgtcggcgacaacgacgtggacgcggccgtgcagccgggggacgacgacggtgacaactggctccgcgacatccacatgctgttcgacgaggacgacgacgacgccgccgccgccgacgccgacgagcgtgtcggtggcgtggacatcaccatcaaggggaggaggacggacgacggcggcgtctacctcggcctgcgcatcgccgacaagaacggcacagggcgtggccggataatctgcttccggttcgacaccgaggccgacacggcgatgaccgtggcggcggagatggtcgccgagctggacatcaccgaccacgaggtgactcgcatcgcccagctgatcgacggcaaggtcgccgcgctggtgccgggctggaggccgggtccagcgacggacgacgacgacgacgacgatctcgtcggcggcggcgatgatccggacgcgccgggcggcgccgccgccgcctgctgcaagaactgccggccggcggcgtcgtcgtcgtcgtcgtcctgcggctcgctcgtcgactttatgtcatcggcggcggcggcggagcgccatggctgcaggcggtgcgccgagctgcacggccggtttgaggagatcacgttccaagccgacgacgacgaagaggagcagcatttgcaggggagctcctctgacaccggaggcagcaaccatgagcagcacgccatgggcaaggacaaggaggtcatgaacatcaatggcattgcacaagatggcacagtacaaggttcagaacagccatga
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| Protein seq | MRVSDQGIKPAALYRVSDPVVRQFIERCLAPAARRPAARELLDDPFLLPLEDDGFFSGDGGDGHGGVGVGYYNLMYNYLHQPACIDDHHACSNGGLSPSNSVGDNDVDAAVQPGDDDGDNWLRDIHMLFDEDDDDAAAADADERVGGVDITIKGRRTDDGGVYLGLRIADKNGTGRGRIICFRFDTEADTAMTVAAEMVAELDITDHEVTRIAQLIDGKVAALVPGWRPGPATDDDDDDDLVGGGDDPDAPGGAAAACCKNCRPAASSSSSSCGSLVDFMSSAAAAERHGCRRCAELHGRFEEITFQADDDEEEQHLQGSSSDTGGSNHEQHAMGKDKEVMNINGIAQDGTVQGSEQP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0005300 | OsLima_07g0005300.01 | Chr07 | 4793476 | 4796427 | - | NAM | ||
| CDS seq | atgcgtgtttctgatcaggggatcaagcccgcggcgttgtacagggtgagcgacccggtggtgaggcaattcatcgaacggtgcctcgccccggcggcgcggcggccggcggcgagggagctgctcgacgacccgttcctgctgccgcttgaggatgatggcttcttctccggcgacggcggcgatggacatggcggtgttggcgttggctactacaatctgatgtacaactacctgcaccagcctgcttgcatcgacgaccaccatgcctgcagcaatggcggcttgtcgccgtcgaatagcgtcggcgacaacgacgtggacgcggccgtgcagccgggggacgacgacggtgacaactggctccgcgacatccacatgctgttcgacgaggacgacgacgacgccgccgccgccgacgccgacgagcgtgtcggtggcgtggacatcaccatcaaggggaggaggacggacgacggcggcgtctacctcggcctgcgcatcgccgacaagaacggcacagggcgtggccggataatctgcttccggttcgacaccgaggccgacacggcgatgaccgtggcggcggagatggtcgccgagctggacatcaccgaccacgaggtgactcgcatcgcccagctgatcgacggcaaggtcgccgcgctggtgccgggctggaggccgggtccagcgacggacgacgacgacgacgacgatctcgtcggcggcggcgatgatccggacgcgccgggcggcgccgccgccgcctgctgcaagaactgccggccggcggcgtcgtcgtcgtcgtcgtcctgcggctcgctcgtcgactttatgtcatcggcggcggcggcggagcgccatggctgcaggcggtgcgccgagctgcacggccggtttgaggagatcacgttccaagccgacgacgacgaagaggagcagcatttgcaggggagctcctctgacaccggaggcagcaaccatgagcagcacgccatgggcaaggacaaggaggtcatgaacatcaatggcattgcacaagatggcacagtacaaggttcagaacagccatga
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| Protein seq | MRVSDQGIKPAALYRVSDPVVRQFIERCLAPAARRPAARELLDDPFLLPLEDDGFFSGDGGDGHGGVGVGYYNLMYNYLHQPACIDDHHACSNGGLSPSNSVGDNDVDAAVQPGDDDGDNWLRDIHMLFDEDDDDAAAADADERVGGVDITIKGRRTDDGGVYLGLRIADKNGTGRGRIICFRFDTEADTAMTVAAEMVAELDITDHEVTRIAQLIDGKVAALVPGWRPGPATDDDDDDDLVGGGDDPDAPGGAAAACCKNCRPAASSSSSSCGSLVDFMSSAAAAERHGCRRCAELHGRFEEITFQADDDEEEQHLQGSSSDTGGSNHEQHAMGKDKEVMNINGIAQDGTVQGSEQP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 4794799 | 4795987 | - | OsLima_07g0005300.01 | OsLima_07g0005300.03,OsLima_07g0005300.01 | All |
| RI | Chr07 | 4794799 | 4796143 | - | OsLima_07g0005300.02 | OsLima_07g0005300.02,OsLima_07g0005300.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.120671 | 0.181575 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0185000 | RBH | 0.284740 | 0.411126 | 3.500653 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g08750 | RBH | 0.090414 | 0.064919 | 0.848045 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0185000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005380 | RBH | 0.191177 | 3.303924 | 2.613670 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005340 | RBH | 0.237635 | 3.032763 | 1.590933 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005250 | RBH | 0.076564 | 7.975309 | 3.677102 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005170 | RBH | 0.049548 | 0.085689 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005320 | RBH | 0.000000 | 15.001884 | 9.916385 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0076900 | RBH | 2.7898615 | 13.3251475 | 0.375186 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005850 | RBH | 0.113571 | 0.422710 | 1.075446 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0079100 | RBH | 7.017464 | 7.8460735 | 0.4086205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005300 | RBH | 0.288059 | 6.492631 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005340 | RBH | 0.000000 | 13.932137 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005400 | RBH | 0.0 | 0.837072 | 1.113402 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005280 | RBH | 0.128609 | 3.101114 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005460 | RBH | 0.0 | 2.546979 | 0.803617 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005240 | RBH | 2.897086 | 17.252449 | 16.262178 |
