Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0001410 | OGI:07003500 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:1192193-1193947 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacattcatgcgcaggctcagcattcattcagtctagttatcgtctgctggatactctctggtgcacctctcagaaggttcggtttaccgttttcatatactttaacgcattattagttttcaggtattcacttggctattttttgttttatttgggcatcctgatcgatctattgatgtatcttgctctgcgcagatcagggagagattattgaagatggaagaggtggtcggttctgctatcgttcacgagacggttaacaagatcgtatccgggtttattgataggtgtgagcgaaaatcaagtgcacaggataacctggagaggctggagatggcacaaatcaagttggacttcgcattggagacatccaataagtggcagatcactagtggcccattgctacgttggcagaagaagctgaagcgtgctactgaagagtgcgatgacacaatacgcatgtgcaggcagcgtgtccaggaagaacaagaggccgaacaagtagcaaggaattccttctttcctaggcgaattgcgcatgccaccaagtcactgatatcatccatcttccatggcaatatagacgagccgagtagatcagttgttcgaagatttgagtggtttgcagatggagctaatgactttctgagatctgtggagtatggaggcacaccacgtcattacttgttcttcgaccctcttattgggcatcttcttgcaggtgaaactctagagtacatagtgcagggaaacaggcagcttttgttttggatacaacccaataacatagcggagaggggagtacaagctatgttgttatttgtttacagtgatggcactgcatctgagggtaactttattttgggtatgctgctacaactttcggagagtacaaacatagttggcactataattaagggcttgcagttgtttacccctcatttcaagtctacaactgaaaatgttagaaagcaacttactctgctacctacacaagacttctcctgggtgccacaggctcattcaaaccattggtacaacattcatagtatagctattgaatggtttcgcccaaacccactgtgttgcaagcatcatggtgcgaaggtatgtggcagtggaaacacggacaagataggattacaaaacgtttctctagaaccaattattgaagtgagtttgaagtgcgaagtttcactgcgtgggtttggagaatgcggaacgatcgtcgagggcaaaccttctatcaaagaagttccgcacctgaaagttaacattatctatatgccgcatggctcttcaggagacctattcccaacagtcgagagttctgtggtagaggtgattaatgctaatgagcaacattgcttgcacacaaacattgccttacaacaaatggaacagatcatgctgccaaaggctgtagattgttttcatcagaatgcaaaagctagagtgtaccagatgctttggaagtctaaacatggcggtgcatatcttgaggttgtgaaggcaaccatgaacatgacgagcacacggagaaccattcgaggagccaagaaagcaaagctgctgcgtggaatggatcagagaacgcagaggcgcacagttgtgacctgtgacttcatctgtgacttccttaacctctgggctgctcatgcgcctgtccagctgcagggctctatccttgattggattcagaaagaaaaggaaacagagttagcatctccactattgcgtctgaaattttag
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| CDS seq | atggaagaggtggtcggttctgctatcgttcacgagacggttaacaagatcgtatccgggtttattgataggtgtgagcgaaaatcaagtgcacaggataacctggagaggctggagatggcacaaatcaagttggacttcgcattggagacatccaataagtggcagatcactagtggcccattgctacgttggcagaagaagctgaagcgtgctactgaagagtgcgatgacacaatacgcatgtgcaggcagcgtgtccaggaagaacaagaggccgaacaagtagcaaggaattccttctttcctaggcgaattgcgcatgccaccaagtcactgatatcatccatcttccatggcaatatagacgagccgagtagatcagttgttcgaagatttgagtggtttgcagatggagctaatgactttctgagatctgtggagtatggaggcacaccacgtcattacttgttcttcgaccctcttattgggcatcttcttgcaggtgaaactctagagtacatagtgcagggaaacaggcagcttttgttttggatacaacccaataacatagcggagaggggagtacaagctatgttgttatttgtttacagtgatggcactgcatctgagggtaactttattttgggtatgctgctacaactttcggagagtacaaacatagttggcactataattaagggcttgcagttgtttacccctcatttcaagtctacaactgaaaatgttagaaagcaacttactctgctacctacacaagacttctcctgggtgccacaggctcattcaaaccattggtacaacattcatagtatagctattgaatggtttcgcccaaacccactgtgttgcaagcatcatggtgcgaaggtatgtggcagtggaaacacggacaagataggattacaaaacgtttctctagaaccaattattgaagtgagtttgaagtgcgaagtttcactgcgtgggtttggagaatgcggaacgatcgtcgagggcaaaccttctatcaaagaagttccgcacctgaaagttaacattatctatatgccgcatggctcttcaggagacctattcccaacagtcgagagttctgtggtagaggtgattaatgctaatgagcaacattgcttgcacacaaacattgccttacaacaaatggaacagatcatgctgccaaaggctgtagattgttttcatcagaatgcaaaagctagagtgtaccagatgctttggaagtctaaacatggcggtgcatatcttgaggttgtgaaggcaaccatgaacatgacgagcacacggagaaccattcgaggagccaagaaagcaaagctgctgcgtggaatggatcagagaacgcagaggcgcacagttgtgacctgtgacttcatctgtgacttccttaacctctgggctgctcatgcgcctgtccagctgcagggctctatccttgattggattcagaaagaaaaggaaacagagttagcatctccactattgcgtctgaaattttag
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| Protein seq | MEEVVGSAIVHETVNKIVSGFIDRCERKSSAQDNLERLEMAQIKLDFALETSNKWQITSGPLLRWQKKLKRATEECDDTIRMCRQRVQEEQEAEQVARNSFFPRRIAHATKSLISSIFHGNIDEPSRSVVRRFEWFADGANDFLRSVEYGGTPRHYLFFDPLIGHLLAGETLEYIVQGNRQLLFWIQPNNIAERGVQAMLLFVYSDGTASEGNFILGMLLQLSESTNIVGTIIKGLQLFTPHFKSTTENVRKQLTLLPTQDFSWVPQAHSNHWYNIHSIAIEWFRPNPLCCKHHGAKVCGSGNTDKIGLQNVSLEPIIEVSLKCEVSLRGFGECGTIVEGKPSIKEVPHLKVNIIYMPHGSSGDLFPTVESSVVEVINANEQHCLHTNIALQQMEQIMLPKAVDCFHQNAKARVYQMLWKSKHGGAYLEVVKATMNMTSTRRTIRGAKKAKLLRGMDQRTQRRTVVTCDFICDFLNLWAAHAPVQLQGSILDWIQKEKETELASPLLRLKF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0001410 | OsLima_07g0001410.01 | Chr07 | 1192193 | 1193947 | + | NAM | ||
| CDS seq | atggaagaggtggtcggttctgctatcgttcacgagacggttaacaagatcgtatccgggtttattgataggtgtgagcgaaaatcaagtgcacaggataacctggagaggctggagatggcacaaatcaagttggacttcgcattggagacatccaataagtggcagatcactagtggcccattgctacgttggcagaagaagctgaagcgtgctactgaagagtgcgatgacacaatacgcatgtgcaggcagcgtgtccaggaagaacaagaggccgaacaagtagcaaggaattccttctttcctaggcgaattgcgcatgccaccaagtcactgatatcatccatcttccatggcaatatagacgagccgagtagatcagttgttcgaagatttgagtggtttgcagatggagctaatgactttctgagatctgtggagtatggaggcacaccacgtcattacttgttcttcgaccctcttattgggcatcttcttgcaggtgaaactctagagtacatagtgcagggaaacaggcagcttttgttttggatacaacccaataacatagcggagaggggagtacaagctatgttgttatttgtttacagtgatggcactgcatctgagggtaactttattttgggtatgctgctacaactttcggagagtacaaacatagttggcactataattaagggcttgcagttgtttacccctcatttcaagtctacaactgaaaatgttagaaagcaacttactctgctacctacacaagacttctcctgggtgccacaggctcattcaaaccattggtacaacattcatagtatagctattgaatggtttcgcccaaacccactgtgttgcaagcatcatggtgcgaaggtatgtggcagtggaaacacggacaagataggattacaaaacgtttctctagaaccaattattgaagtgagtttgaagtgcgaagtttcactgcgtgggtttggagaatgcggaacgatcgtcgagggcaaaccttctatcaaagaagttccgcacctgaaagttaacattatctatatgccgcatggctcttcaggagacctattcccaacagtcgagagttctgtggtagaggtgattaatgctaatgagcaacattgcttgcacacaaacattgccttacaacaaatggaacagatcatgctgccaaaggctgtagattgttttcatcagaatgcaaaagctagagtgtaccagatgctttggaagtctaaacatggcggtgcatatcttgaggttgtgaaggcaaccatgaacatgacgagcacacggagaaccattcgaggagccaagaaagcaaagctgctgcgtggaatggatcagagaacgcagaggcgcacagttgtgacctgtgacttcatctgtgacttccttaacctctgggctgctcatgcgcctgtccagctgcagggctctatccttgattggattcagaaagaaaaggaaacagagttagcatctccactattgcgtctgaaattttag
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| Protein seq | MEEVVGSAIVHETVNKIVSGFIDRCERKSSAQDNLERLEMAQIKLDFALETSNKWQITSGPLLRWQKKLKRATEECDDTIRMCRQRVQEEQEAEQVARNSFFPRRIAHATKSLISSIFHGNIDEPSRSVVRRFEWFADGANDFLRSVEYGGTPRHYLFFDPLIGHLLAGETLEYIVQGNRQLLFWIQPNNIAERGVQAMLLFVYSDGTASEGNFILGMLLQLSESTNIVGTIIKGLQLFTPHFKSTTENVRKQLTLLPTQDFSWVPQAHSNHWYNIHSIAIEWFRPNPLCCKHHGAKVCGSGNTDKIGLQNVSLEPIIEVSLKCEVSLRGFGECGTIVEGKPSIKEVPHLKVNIIYMPHGSSGDLFPTVESSVVEVINANEQHCLHTNIALQQMEQIMLPKAVDCFHQNAKARVYQMLWKSKHGGAYLEVVKATMNMTSTRRTIRGAKKAKLLRGMDQRTQRRTVVTCDFICDFLNLWAAHAPVQLQGSILDWIQKEKETELASPLLRLKF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0121100 | SBH | 0.104783 | 0.0 | 0.987942 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g03015 | SBH | 0.0 | 0.0 | 0.043711 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0121100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001370 | RBH | 0.056760 | 0.0 | 0.947426 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001380 | SBH | 0.0 | 0.665267 | 0.098683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001330 | RBH | 0.041215 | 2.152339 | 0.549171 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001380 | SBH | 0.010323 | 0.023727 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001370 | RBH | 1.696654 | 1.326835 | 2.553534 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0019000 | SBH | 1.68015 | 4.6548665 | 2.975432 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001350 | SBH | 0.0 | 0.000000 | 0.063735 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0017900 | SBH | 1.135893 | 2.762335 | 5.2986605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001450 | RBH | 0.059387 | 0.066535 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001390 | RBH | 0.512629 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001540 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001460 | RBH | 0.029762 | 0.523747 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001470 | RBH | 0.218714 | 0.728403 | 1.844731 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001390 | SBH | 0.0 | 0.0 | 1.186679 |
