Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0121100 | OGI:07003500 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:1113969-1116298 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATTCTTGAAAACTGCAGTCCAGTTATCTTGTGCTAGGTACTCTCTCTCTCTGGGTGCACCTGTCTGACCCCCAAGGCCCCAAGTTACTTCTTATTGATTCAACCCAGAAGGTTAGGCCTTACATTGAACTTTGAATTTCTCACTTTTTTCTGTATGGAATCATGCATTATTTCATTTCACTGCCCCCTGCATGAATATCTCTTATATCACAAAATTGATTCAATTCAGAAGGCTGGCCTTTTCATATCCTACAGCATTGCACTTTGTTAGTACTTATTAGGAATTCACTGGTCTGTCTTTTGATTTAGTGATTGATATAGTATATATTGATTCTTGATCAGGGAGGGAATCCTACAGATTACTGAAGATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGCATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATGGCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAGCCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATACGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCCTTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGCAATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCTAATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGACCCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAACAAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTGTTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTACAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCTCCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAAGACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCTACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGTAGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTGAATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGCAAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACGCCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATTAATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATCATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATGCTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATTCTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAGATGATATAGGGCTCGTTTAGTAGAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGGGTTATGGAGCCGTTTAAACCCAGCTCCACCTCTTTGGTTCATTTTATGAGAGAGTTCCATTCAGCTCCACTCCCATTTTGGGTGGAGCTAAAACTGTTTGGCTGAGCTCTAGCTCTAGGAGAGGTGGAGCTAGTGCTAGTCAGGAAATCAGAGAAACGTGAAGTACAAATGTAATATTTTAACTGAGAAAAGTGACTTGTAGGGAGATAATATCTAAGTCATTCGGAGTTAACTGATATGAAATGTGTGCTACATAAAAATGAAAACTGAAAATGTCACCTAGTGGTCTGCTCTTTCTTGACCTCTGTAACTGCTTCTCCTTCTAATATATCCGGCAGAGCTCCTGCCGTCTTTTGCTTC
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| CDS seq | ATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGCATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATGGCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAGCCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATACGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCCTTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGCAATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCTAATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGACCCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAACAAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTGTTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTACAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCTCCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAAGACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCTACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGTAGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTGAATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGCAAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACGCCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATTAATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATCATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATGCTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATTCTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAG
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| Protein seq | MGEVVSSALVHETVNKIISGMIDKYERKSSAQEHMDRLEMAQIKLDLALETSKKWQIISEPLLRWQKKLKRVAEECDDTIRMCRQRVQEEQEAKQVARDSFFPRRIAHATKSLISSIFYGNIDEPTRSTVRRFEWFADGANDFLRSVESGGTPRRYLFFDPLIGHLLAGEMLEYKLVQGNKQHLFWIRPNNIAERIEGMVFFVYNDGTAPEDNFFLGMILQISESTNIVGTIIKCLQLFAPHFESVTETVRKELTLLPTQDFSWIPHSRLYHWDNLHSIATEWFRPNPVCCKHHDQKVCGSGNMNMIELPDFSLESVIQVNLQCHVALPGFRERGTIVEGKSSLKEYLRGPHLNVLLAYTPHGSSESLFPSVEGSVIEVINANEQHCLHTNIALQQMEEIMLPRAVDYFHQNAKATVYQMLWKPKHGVAYLHAVKATVNILSTRRTIRGARKSKLLRQQDHKMHHRTDGISDFLSLWAAHAPVQLQGSILDWVQKEKEVQLAAPLLRLKF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0121100 | Os07t0121100-01 | Chr07 | 1113969 | 1116298 | + | irgsp1_rep | ||
| CDS seq | ATGGGGGAGGTGGTCAGTTCTGCTCTCGTTCATGAGACAGTGAACAAAATCATATCTGGCATGATTGACAAGTATGAGCGAAAATCAAGTGCGCAGGAACACATGGACAGGTTAGAGATGGCACAAATCAAGTTAGATCTTGCACTTGAGACATCCAAGAAGTGGCAGATCATTAGTGAGCCGTTGCTACGTTGGCAGAAGAAGCTGAAACGTGTTGCTGAAGAGTGTGATGACACAATACGCATGTGCAGGCAGCGTGTCCAGGAAGAACAAGAGGCCAAACAAGTAGCAAGGGATTCCTTCTTTCCTAGGCGAATTGCCCATGCCACCAAGTCACTGATATCGTCCATCTTTTATGGCAATATCGACGAGCCGACTAGATCTACCGTTCGAAGATTCGAGTGGTTTGCAGATGGAGCTAATGACTTTCTGAGATCTGTGGAGTCTGGAGGGACACCGCGTCGTTACTTGTTCTTCGACCCTCTTATTGGGCACCTTCTTGCAGGTGAAATGCTAGAGTACAAATTGGTTCAGGGAAACAAGCAACATTTGTTTTGGATACGGCCCAATAACATTGCAGAGAGGATAGAAGGTATGGTGTTCTTCGTTTACAATGATGGCACTGCACCTGAGGATAACTTTTTTCTTGGTATGATACTACAGATTTCAGAGAGTACAAACATAGTTGGCACTATAATTAAGTGCTTGCAGTTGTTTGCTCCTCATTTCGAGTCTGTAACTGAAACTGTCAGGAAAGAACTTACTCTGCTACCTACACAAGACTTCTCCTGGATACCACATTCTCGTTTATACCATTGGGACAACCTTCACAGTATAGCTACCGAATGGTTCCGCCCAAACCCAGTGTGTTGCAAGCATCATGATCAGAAGGTATGTGGTAGTGGCAACATGAACATGATAGAATTACCAGACTTCTCTCTAGAATCAGTTATTCAAGTGAATTTGCAGTGCCATGTTGCACTGCCTGGGTTCAGAGAACGGGGAACAATTGTCGAGGGCAAATCTTCTCTCAAAGAATATCTGCGTGGACCGCATCTGAATGTTCTACTTGCCTATACGCCTCACGGATCTTCAGAAAGCCTATTCCCATCAGTCGAGGGTTCTGTGATAGAGGTGATTAATGCTAATGAGCAGCATTGCTTGCATACAAATATTGCCTTGCAACAAATGGAAGAGATCATGTTGCCGAGGGCCGTAGATTATTTTCATCAGAATGCGAAAGCGACAGTGTATCAGATGCTTTGGAAGCCTAAACATGGTGTTGCATATCTTCATGCTGTGAAGGCGACCGTGAACATTCTGAGCACACGGAGGACCATTCGAGGAGCTAGGAAATCAAAGCTGTTGCGACAACAGGATCATAAGATGCATCATCGCACAGATGGAATCTCTGACTTCCTCAGCCTTTGGGCTGCGCACGCACCTGTCCAGCTTCAGGGCTCAATCCTTGATTGGGTTCAGAAAGAGAAGGAAGTACAATTAGCAGCTCCTCTACTGCGCTTGAAATTTTAG
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| Protein seq | MGEVVSSALVHETVNKIISGMIDKYERKSSAQEHMDRLEMAQIKLDLALETSKKWQIISEPLLRWQKKLKRVAEECDDTIRMCRQRVQEEQEAKQVARDSFFPRRIAHATKSLISSIFYGNIDEPTRSTVRRFEWFADGANDFLRSVESGGTPRRYLFFDPLIGHLLAGEMLEYKLVQGNKQHLFWIRPNNIAERIEGMVFFVYNDGTAPEDNFFLGMILQISESTNIVGTIIKCLQLFAPHFESVTETVRKELTLLPTQDFSWIPHSRLYHWDNLHSIATEWFRPNPVCCKHHDQKVCGSGNMNMIELPDFSLESVIQVNLQCHVALPGFRERGTIVEGKSSLKEYLRGPHLNVLLAYTPHGSSESLFPSVEGSVIEVINANEQHCLHTNIALQQMEEIMLPRAVDYFHQNAKATVYQMLWKPKHGVAYLHAVKATVNILSTRRTIRGARKSKLLRQQDHKMHHRTDGISDFLSLWAAHAPVQLQGSILDWVQKEKEVQLAAPLLRLKF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0121100 | RBH | 0.104783 | 0.0 | 0.987942 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02990 | RBH | 0.070860 | 0.0 | 0.254315 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0120900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001370 | SBH | 0.056760 | 0.0 | 0.947426 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001380 | SBH | 0.0 | 0.665267 | 0.098683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001330 | RBH | 0.041215 | 2.152339 | 0.549171 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001330 | SBH | 0.000000 | 0.013687 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001320 | SBH | 0.0 | 1.031698 | 1.348012 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0019600 | SBH | 0.8657365 | 2.0345275 | 5.517556 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001350 | SBH | 0.0 | 0.000000 | 0.063735 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0017900 | RBH | 1.135893 | 2.762335 | 5.2986605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001450 | SBH | 0.059387 | 0.066535 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001420 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001450 | RBH | 0.263959 | 9.348996 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001480 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001400 | SBH | 0.0 | 1.127655 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001470 | SBH | 0.218714 | 0.728403 | 1.844731 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001390 | SBH | 0.0 | 0.0 | 1.186679 |
