Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0001060 | OGI:07002250 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:872618-877159 | ||||||||
| Gene Symbol | PSKR3, OsPSKR3, OsPSKR15, PSKR15, - | ||||||||||
| DNA seq | atgaatcccacaaacaaccaattgctccttcccatcttcttcctcctcatcatcataaacattagtagttctagttcgtacctggtagcaggaggcagctgcatccctgaagagagagctgccttgctctcattcaacaagagcatcacctttgatcccggtaacaatctcgcctcctggcacggcgatgactgttgccggtggagaggcatcaggtgcagcaaccacagtggccatgtcctcgaccttcgccttcgcaatcccaatccaagctccagcagcggacaaggatgtgcagataccaatgccttgttcggtcagataagcccctctttgctttcgctcaagcacctacgacacttggacctcagcatgaactgcatggttaggccaaacagcactttacctgagttcttgggtttcatgtacagcttgaggtatctcaacctctctggcataccgtttgccggtcgaatcccgcctcaactcggtaaattgtcgaggttgcaatatcttgatcttggacagaatggtgtctctgaggagatgtactcaactgacatcacctggttgacaaatctatctcagctgcagtacattagtatgatcaatgttaatttatcaggaatagcagactggcctcataccttgaacatgattccatctctaagggttgttcgtctttctggctgtgaacttcaaagtgcaaaccagtcacttgtgcatctcaatctcacaaaacttgagatgcttgatctatcctccaatggttttgatcaccctattgcatcatgttggttttggaaagccacaaatctcaagtacatcaaccttcagtgggacggattggttggcaaatttccacaacaactaggaaacatgacatctctccaagtccttgatgtttcatacaacaatctgaacaaggacttagtgatggcaggagagctgaacaatctatgcagtttggaaatactagatctcaccggcatggagataattggagatatgacaatgttgatcgagggtttgtcgtcacagtgtgcaaggaaaaaattactggagttgaatttgagtcacaacaatttcactggagccttgccgaattcgatacgaagattcacgagcttgcacatgcttgacatctcctttaacaaccttattgggagtataccaccagggattggaaacttgacgtctttagttagtcttgatctctctgataatgatatttctggacatctaccaacagaggttatgcatttgttaagcttagccagccttaacctctccagcaatcgcctaagtggaagcatacctgctgagattggtgtgcttactaatctgacttctttggtcctacgcaataacactttcagtggtgttatcagggaagaacactttgcaggtctgataagcttgaagaacatagacctgtcttccaattatttgaagttttcaatggattcagattggcttccacccttcagactggagtctgcatggcttgcatcttgtcaaattgggcccatcttggcttcagtggcagcacaaaatcatcgaatttgatatttcaagcacaggtttaatgggcaagattcctgattggttttggtcaacattttcccaggccacatatctggacatgtcgcaaaatcaaataagtggtagcttaccagcgcatctaggtgacatggcttttgaacaactttacctcagttcaaaccaattcactggaccaatacctccttttccaagaaaaatcaatgtgttagacatctccaacaattcattctcaggaacactgccgccacatcttgaagctccacagcttcaaacattactcatgtattcaaaccgaattggtggcaacattccgcaatctatttgtgaattgcaactgttgggagatctagatttgtcaggcaacattctggtgggtgaaatcccacaatgttctgagatcagctacaattttctcctgctaagcaacaatatgttatcaggaaaattcctggcttttttgcagaactgcacaggcctgcagtttttggatcttgcatggaataagttctttgggagcttacctgcctggataggagactttagagatttacaaattccacgactaagtcataatacattttctgggagcattccagctggaattacaaatcttttgtctctccagtacttggacctatcagataacaacatatctggtgctataccgtggcatctatctaaccttacaggcatgacaatgaaaggcttccagcctttttctggtgctagtatgagttctggtttggtcacagtcgaagtaagtggtcaattcggagaaatattattatctacaaaagggaaacaacttccatatggcgggggacttcaatattttgtgggcattgatttatcaacaaacccattgacaggtgaaattccaccagatatcacttctcttgatgcattaataaatttaaatttatcttcaaaccagttgagtggagaaattcccaacaagattggtaccctgcagtcattggaatctcttgacctctctaagaacaaactttctggtggaatcccatcgagcttatcaagtttggcattcctaagctacttgaatttgtcctacaacaatttatctggaatgataccctcaggccgccaacttggcaccctcagtgcagatgatccatcactaatgtatattggaaatgacggactttgtgggcctcctcttccaaagaactgttcaagaaatgatacactcatccatggctacctccacaacgacaagcaagaatttgagccaatgacattttattttggttttggtataggacttgtggtggggatctgggtggtgttttgtgtcctgctgttcaacaagacatggaggattgcttatttccggctctttgacaagctgtatgatagagtttacgtatttttggttgtaagttggtcaagcttggcgagagaagcagctgaaaaataagtaaatagtactttgaaggcggcaatgtccaatgccttgataaaagaacacaacgggaatagttgtgtattaacctaggtgagaggaagatctcaacaagatactagtacgtgtttagccgtgaacgttgtttgttcatctaaataaggaggaagatgttgtctgattctgcttatacatattccctttatatacagtcatgaggttctttcatggcatacgtaattccatcatgttttcctgcttactgttgagcattttgtgctagattataagatactggtagatgatcatgcaaaattttcaaggtatgctcttttagctaataataataataaaatgggatgtgcttctatgctccgaaaaaaaaaacttgcacgaaagttaaagctaatcagcggctgtgattagaagcgagattagcacttaattatcattagcgaggggtaatttcgtcaagattttcgagcccatatccagcccagtccatctgaagcgatccccacccccaccggtccaccacggcgccgctcctcaaccgcaccgccgcgccgcctccactccctcctcccctcgcctcgccgccgctgcgccgctcaacgccgccttgccgccccggcgctccgctctcttcttcccctaggctagccgctcagcccagcgccgcccggcttgctgcctctccatcctcttcatcccctcgtctcgccgcttccccgcccctgcgccgtgcagcccggcgcacccccttcatccatctcacacgcgtagtttgcttgatgagtggtttgctccatgtcagaagcttggtattgcagcagaatatggctattttgtcaggtaaacattttgagtacttttttttcttcctaaatctgtttttatttgcattttctccacacactattatgcaattgtacagttgaattattcaggagtatgatgaactgtttatgttctctcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgacttcggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtagtcattacattgtagaagtcaaaccacaggtctataccatttgaatttattactacattttttcactttcaactcattatgtcctgctcacactaaatgaaatacattacttgtgcagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgctggatttcgtagtgtgcatcggtaacgatcgatctgatgaggacatgttcaaaagcatcgacagcatgacctccagctctgcattccctgcagttcccgaggtctttgcctgttcagttggtcagaaacccagcaaagcaaaataa
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| CDS seq | atgaatcccacaaacaaccaattgctccttcccatcttcttcctcctcatcatcataaacattagtagttctagttcgtacctggtagcaggaggcagctgcatccctgaagagagagctgccttgctctcattcaacaagagcatcacctttgatcccggtaacaatctcgcctcctggcacggcgatgactgttgccggtggagaggcatcaggtgcagcaaccacagtggccatgtcctcgaccttcgccttcgcaatcccaatccaagctccagcagcggacaaggatgtgcagataccaatgccttgttcggtcagataagcccctctttgctttcgctcaagcacctacgacacttggacctcagcatgaactgcatggttaggccaaacagcactttacctgagttcttgggtttcatgtacagcttgaggtatctcaacctctctggcataccgtttgccggtcgaatcccgcctcaactcggtaaattgtcgaggttgcaatatcttgatcttggacagaatggtgtctctgaggagatgtactcaactgacatcacctggttgacaaatctatctcagctgcagtacattagtatgatcaatgttaatttatcaggaatagcagactggcctcataccttgaacatgattccatctctaagggttgttcgtctttctggctgtgaacttcaaagtgcaaaccagtcacttgtgcatctcaatctcacaaaacttgagatgcttgatctatcctccaatggttttgatcaccctattgcatcatgttggttttggaaagccacaaatctcaagtacatcaaccttcagtgggacggattggttggcaaatttccacaacaactaggaaacatgacatctctccaagtccttgatgtttcatacaacaatctgaacaaggacttagtgatggcaggagagctgaacaatctatgcagtttggaaatactagatctcaccggcatggagataattggagatatgacaatgttgatcgagggtttgtcgtcacagtgtgcaaggaaaaaattactggagttgaatttgagtcacaacaatttcactggagccttgccgaattcgatacgaagattcacgagcttgcacatgcttgacatctcctttaacaaccttattgggagtataccaccagggattggaaacttgacgtctttagttagtcttgatctctctgataatgatatttctggacatctaccaacagaggttatgcatttgttaagcttagccagccttaacctctccagcaatcgcctaagtggaagcatacctgctgagattggtgtgcttactaatctgacttctttggtcctacgcaataacactttcagtggtgttatcagggaagaacactttgcaggccgccaacttggcaccctcagtgcagatgatccatcactaatgtatattggaaatgacggactttgtgggcctcctcttccaaagaactgttcaagaaatgatacactcatccatggctacctccacaacgacaagcaagaatttgagccaatgacattttattttggttttggtataggacttgtggtggggatctgggtggtgttttgtgtcctgctgttcaacaagacatggaggattgcttatttccggctctttgacaagctgtatgatagagtttacgtatttttggttaagcttggtattgcagcagaatatggctattttgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgacttcggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtagtcattacattgtagaagtcaaaccacagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgctggatttcgtagtgtgcatcggtaacgatcgatctgatgaggacatgttcaaaagcatcgacagcatgacctccagctctgcattccctgcagttcccgaggtctttgcctgttcagttggtcagaaacccagcaaagcaaaataa
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| Protein seq | MNPTNNQLLLPIFFLLIIINISSSSSYLVAGGSCIPEERAALLSFNKSITFDPGNNLASWHGDDCCRWRGIRCSNHSGHVLDLRLRNPNPSSSSGQGCADTNALFGQISPSLLSLKHLRHLDLSMNCMVRPNSTLPEFLGFMYSLRYLNLSGIPFAGRIPPQLGKLSRLQYLDLGQNGVSEEMYSTDITWLTNLSQLQYISMINVNLSGIADWPHTLNMIPSLRVVRLSGCELQSANQSLVHLNLTKLEMLDLSSNGFDHPIASCWFWKATNLKYINLQWDGLVGKFPQQLGNMTSLQVLDVSYNNLNKDLVMAGELNNLCSLEILDLTGMEIIGDMTMLIEGLSSQCARKKLLELNLSHNNFTGALPNSIRRFTSLHMLDISFNNLIGSIPPGIGNLTSLVSLDLSDNDISGHLPTEVMHLLSLASLNLSSNRLSGSIPAEIGVLTNLTSLVLRNNTFSGVIREEHFAGRQLGTLSADDPSLMYIGNDGLCGPPLPKNCSRNDTLIHGYLHNDKQEFEPMTFYFGFGIGLVVGIWVVFCVLLFNKTWRIAYFRLFDKLYDRVYVFLVKLGIAAEYGYFVRWNKAAEWESSYPNHDFEWKHIAEPVMQVYTETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCSHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTLDFVVCIGNDRSDEDMFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAK |
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| Function | Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [UniProtKB/Swiss-Prot:Q9LRA7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0001060 | OsLima_07g0001060.01 | Chr07 | 872618 | 877159 | + | NAM | ||
| CDS seq | atgaatcccacaaacaaccaattgctccttcccatcttcttcctcctcatcatcataaacattagtagttctagttcgtacctggtagcaggaggcagctgcatccctgaagagagagctgccttgctctcattcaacaagagcatcacctttgatcccggtaacaatctcgcctcctggcacggcgatgactgttgccggtggagaggcatcaggtgcagcaaccacagtggccatgtcctcgaccttcgccttcgcaatcccaatccaagctccagcagcggacaaggatgtgcagataccaatgccttgttcggtcagataagcccctctttgctttcgctcaagcacctacgacacttggacctcagcatgaactgcatggttaggccaaacagcactttacctgagttcttgggtttcatgtacagcttgaggtatctcaacctctctggcataccgtttgccggtcgaatcccgcctcaactcggtaaattgtcgaggttgcaatatcttgatcttggacagaatggtgtctctgaggagatgtactcaactgacatcacctggttgacaaatctatctcagctgcagtacattagtatgatcaatgttaatttatcaggaatagcagactggcctcataccttgaacatgattccatctctaagggttgttcgtctttctggctgtgaacttcaaagtgcaaaccagtcacttgtgcatctcaatctcacaaaacttgagatgcttgatctatcctccaatggttttgatcaccctattgcatcatgttggttttggaaagccacaaatctcaagtacatcaaccttcagtgggacggattggttggcaaatttccacaacaactaggaaacatgacatctctccaagtccttgatgtttcatacaacaatctgaacaaggacttagtgatggcaggagagctgaacaatctatgcagtttggaaatactagatctcaccggcatggagataattggagatatgacaatgttgatcgagggtttgtcgtcacagtgtgcaaggaaaaaattactggagttgaatttgagtcacaacaatttcactggagccttgccgaattcgatacgaagattcacgagcttgcacatgcttgacatctcctttaacaaccttattgggagtataccaccagggattggaaacttgacgtctttagttagtcttgatctctctgataatgatatttctggacatctaccaacagaggttatgcatttgttaagcttagccagccttaacctctccagcaatcgcctaagtggaagcatacctgctgagattggtgtgcttactaatctgacttctttggtcctacgcaataacactttcagtggtgttatcagggaagaacactttgcaggccgccaacttggcaccctcagtgcagatgatccatcactaatgtatattggaaatgacggactttgtgggcctcctcttccaaagaactgttcaagaaatgatacactcatccatggctacctccacaacgacaagcaagaatttgagccaatgacattttattttggttttggtataggacttgtggtggggatctgggtggtgttttgtgtcctgctgttcaacaagacatggaggattgcttatttccggctctttgacaagctgtatgatagagtttacgtatttttggttaagcttggtattgcagcagaatatggctattttgtcagatggaacaaagcagctgaatgggaatcaagctatccaaaccatgattttgagtggaagcacatcgctgaaccggtcatgcaagtttacaccgaaacaactgatgggtcctccatagagccaaaggaaagtgctctattatggcattatctggatgcagaccatgacttcggttcctgccaagcaaaggaactactgggtcatcttgaaagggtgctatcaaatgaacctgttgttgtgaagtgtagtcattacattgtagaagtcaaaccacagggagttagcaagggtcttgttgtggacaaggtaattcacagattgatgaacaacgggaagacgctggatttcgtagtgtgcatcggtaacgatcgatctgatgaggacatgttcaaaagcatcgacagcatgacctccagctctgcattccctgcagttcccgaggtctttgcctgttcagttggtcagaaacccagcaaagcaaaataa
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| Protein seq | MNPTNNQLLLPIFFLLIIINISSSSSYLVAGGSCIPEERAALLSFNKSITFDPGNNLASWHGDDCCRWRGIRCSNHSGHVLDLRLRNPNPSSSSGQGCADTNALFGQISPSLLSLKHLRHLDLSMNCMVRPNSTLPEFLGFMYSLRYLNLSGIPFAGRIPPQLGKLSRLQYLDLGQNGVSEEMYSTDITWLTNLSQLQYISMINVNLSGIADWPHTLNMIPSLRVVRLSGCELQSANQSLVHLNLTKLEMLDLSSNGFDHPIASCWFWKATNLKYINLQWDGLVGKFPQQLGNMTSLQVLDVSYNNLNKDLVMAGELNNLCSLEILDLTGMEIIGDMTMLIEGLSSQCARKKLLELNLSHNNFTGALPNSIRRFTSLHMLDISFNNLIGSIPPGIGNLTSLVSLDLSDNDISGHLPTEVMHLLSLASLNLSSNRLSGSIPAEIGVLTNLTSLVLRNNTFSGVIREEHFAGRQLGTLSADDPSLMYIGNDGLCGPPLPKNCSRNDTLIHGYLHNDKQEFEPMTFYFGFGIGLVVGIWVVFCVLLFNKTWRIAYFRLFDKLYDRVYVFLVKLGIAAEYGYFVRWNKAAEWESSYPNHDFEWKHIAEPVMQVYTETTDGSSIEPKESALLWHYLDADHDFGSCQAKELLGHLERVLSNEPVVVKCSHYIVEVKPQGVSKGLVVDKVIHRLMNNGKTLDFVVCIGNDRSDEDMFKSIDSMTSSSAFPAVPEVFACSVGQKPSKAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.064836 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0468500 | SBH | 0.0 | 0.0 | 1.300981 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0468500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001030 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001060 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001000 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001010 | RBH | 0.0 | 0.027290 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001010 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0014600 | SBH | 0.025149 | 0.101997 | 0.008504 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001010 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0012400 | RBH | 2.6755075 | 0.728677 | 1.916197 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008360 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001100 | RBH | 0.286253 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001090 | RBH | 0.936676 | 5.021269 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001170 | RBH | 0.453439 | 0.0 | 0.161181 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001030 | RBH | 0.135836 | 0.551361 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001070 | RBH | 0.396792 | 0.0 | 0.208302 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001080 | SBH | 0.0 | 0.0 | 0.0 |
