Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0468500 | OGI:07047400 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:16723268-16726019 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAACACATGTTTGACCATTCGTCTTATTCAAAAAAAAATTGTGAAATATGTAAAACTATATGTGTACATGAAAGTATATTCAACAATAAATCAAATAATATGAAAAGAATAAATAATTACTTAAATTTTTTGAATAAGACGAATGGTCAAACACATACTAAAAAGTCAACGGTGTCAAACATTTTGAAACGGAGGGAGTACTATTTCTTCAGACCTGTCATGGTTGCTAGGGCTGTCATCTTTGAGGCATCTTGACATGAGTTGGGTGGATCTTAGTGCCGTCAGGGACTGGGTCCATACCGTCAACACGCTCTCTTCCCTGAAAGTTCTTCGCTTGAGGGGCTGTAAACTTGAGAGTGCCATCTCTACCATGTCACATTTCAACCTCACACGTCTTGAGGTCCTCGATCTTTCAGTCAACAAATTCAATGCTTCGATTCAGCAGAAATGGCTTTGGGATCACAAAGGCATCAAGGAGCTCTATCTGACAGAAGGCCATTGGTTTGGGTCCATTCCGGACGCATTTGGTAACATGTCTGCACTTCAGGTTATGGATCTTGGCCACAACAACCTAATGGGGACCATACCGACAACCCTGCAGCATCTGTGTGATCTGCAGGTTGTTAGCCTATATGACAACTATATTGATGGGGACGCAACAGAATTCATGGAGAGATTACCGAGGTGTTCATGGAATAAGTTGCGAGAGATGGACCTGCATTCTACGAATTTGAGCGGTGAGCTGCCGGTTTGGATAGGAAAGTTGAGCAGCCTGGATTTTGTTGATCTCTCACACAACACACTGACTGGTGAGCTGCCTGTGGGTTTTGGAGCACTTAGAAACATGATTTACCTAAATCTCGGTTGGAATAATTTCACCGGACAGATTTCCGAGGAGCATTTTTCAAGTTTACTGAACTTAAAATATTTGTACCTCTCTGGGAACTCTTTCAAGCAGATGGTCTTCGAGGAAGATTGGATTCCTCCATTCAGACTGAAGGTAGCACATTTGCGGTCGTGTCGATTAGGTCCCAAGTTCCCATCATGGCTAAAATGGCAAACTGAAATCAGGGTGCTTGATGTCTCAGGCACGTGCATAAGTGATTCTTTGCCTGTTTGGTTTAAGACCGTTTTTTCTCAAGCTTACTCACTGAACTTGTCGGACAATCAGTTATGTGGTACCTTACCCAGAACTCCAGAGGATATGTTGGCAATGGTGATGGATCTTGGGTCCAACAATTTGACAGGTCAAGTTCCACGCTTCCCTGTAAACATCACCTACTTTGATCTCTCAAATAATTCTTTGTCCGGGCCACTACCATCTGATCTTGGAGCTCCCAGGTTAGAGGAGCTGCGTCTTTACAGCAATTACATCACAGGCACCATCCCTGCTTATTTCTGCCAGTTGCGTCGATTGGTATCTTTGTATCTGTCAAGCAATCACCTGACAGGAGAATTCCCACAATGTTCAGATAACTACAAAGCACTACCACCGGATGATCTGGATCCGTTCTTCTCGCCTTATTTTGGCGCCGCATGTCTACAATAGACCTGAGCAACAATAGCCTCACAGGCCCATTCCCACAGTTTCTTGAAAATACCACATATTTGCGTTTTCTTGATCTCTCACACAACATTTTTTCTGGGAAGCTGCCAACATGGATAGCAAAGAGAATTCCGTACTCACGGTTTTTGCGGTTACAGTCGAATATGTTTTCTGGCCACATTCCAGAGGAATTAACCAACTCTTTTGGCCTTCATTATTTGGACCTTGCAAACAACAACATATCAGGAATAATACCTCAATCTCTAGCAGGCATGAAGGCCATGAGGCGCACTACTCCGGATGGGAACAGGGGCGATGTCTACGAGGGCAGCATATCATCGTTCACCAAAAGCCAAGAGCTTCACTACACCTTCAGCAACTACAATCTGGTCGTCCTCCTCGATCTGTCAGGCAACAGCTTGACAGGACAGATTCCAGAGGAGATATCACTGCTCCTTGGGCTCAAGAGCCTGAATCTCTCCGGCAACCACTTGGGTGGAAAGATTCCGAACACGATCGGCGATTTGAAGGGGTTGGAGTCACTGGATCTCTCTCGCAACAGGTTGTCCGGTGAAATACCGTCAAGTTTGTCGGAATTAACTTCCTTCAGCTGGCTGAACCTGTCCTACAACAATTTGTCGGGGAGAATACCATCAGGGCATCAACTACAGACACTCAATGACCAAGAGTACATCTACATCGGCAATCCTGGCCTTTGCGGCCCTCCTCTCCGCAAGAATTGTGCAATGAGAGGAAGACACGATGAAGTTGACGATGTGTCAGATGATTTAGCAGTCCTGTATCTTGGTATGAGCATAGGGTTCGTAGTGTCTCTCTGGTTGGTGTTTTGCACTTTGCTGTTCAGGAAATAATGGAGAATCGCATACTTTGTGCTCTTTCATAGGCTATGTGACAACATATTTGTGCAGGTGGCGTGCAAGCTGGGCAATAAGTCGAGTGTTACAGGTCCCAAGAACAATACTTAAGATCAACTGATAGGAAACTTGGGAGTCATTAATATATGATGTTTTGGACAAGTAAATGAACCTAAGTTGTTTGTCCTAGCAACAAGTATCTTTTGGACAAGAGTATGCTGCAAATCGGTTGTCATTTCCTCCTTTTTTTTGTGTGTTTTCCTTTTGGGGAAACTTATACACGGTACTGTAGATGCTTCAGCTACTTTATATCAAGCCATGTACTTCTGC
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| CDS seq | AACGGAGGGAGTACTATTTCTTCAGACCTGTCATGGTTGCTAGGGCTGTCATCTTTGAGGCATCTTGACATGAGTTGGGTGGATCTTAGTGCCGTCAGGGACTGGGTCCATACCGTCAACACGCTCTCTTCCCTGAAAGTTCTTCGCTTGAGGGGCTGTAAACTTGAGAGTGCCATCTCTACCATGTCACATTTCAACCTCACACGTCTTGAGGTCCTCGATCTTTCAGTCAACAAATTCAATGCTTCGATTCAGCAGAAATGGCTTTGGGATCACAAAGGCATCAAGGAGCTCTATCTGACAGAAGGCCATTGGTTTGGGTCCATTCCGGACGCATTTGGTAACATGTCTGCACTTCAGGTTATGGATCTTGGCCACAACAACCTAATGGGGACCATACCGACAACCCTGCAGCATCTGTGTGATCTGCAGGTTGTTAGCCTATATGACAACTATATTGATGGGGACGCAACAGAATTCATGGAGAGATTACCGAGGTGTTCATGGAATAAGTTGCGAGAGATGGACCTGCATTCTACGAATTTGAGCGGTGAGCTGCCGGTTTGGATAGGAAAGTTGAGCAGCCTGGATTTTGTTGATCTCTCACACAACACACTGACTGGTGAGCTGCCTGTGGGTTTTGGAGCACTTAGAAACATGATTTACCTAAATCTCGGTTGGAATAATTTCACCGGACAGATTTCCGAGGAGCATTTTTCAAGTTTACTGAACTTAAAATATTTGTACCTCTCTGGGAACTCTTTCAAGCAGATGGTCTTCGAGGAAGATTGGATTCCTCCATTCAGACTGAAGGTAGCACATTTGCGGTCGTGTCGATTAGGTCCCAAGTTCCCATCATGGCTAAAATGGCAAACTGAAATCAGGGTGCTTGATGTCTCAGGCACGTGCATAAGTGATTCTTTGCCTGTTTGGTTTAAGACCGTTTTTTCTCAAGCTTACTCACTGAACTTGTCGGACAATCAGTTATGTGGTACCTTACCCAGAACTCCAGAGGATATGTTGGCAATGGTGATGGATCTTGGGTCCAACAATTTGACAGGTCAAGTTCCACGCTTCCCTGTAAACATCACCTACTTTGATCTCTCAAATAATTCTTTGTCCGGGCCACTACCATCTGATCTTGGAGCTCCCAGGTTAGAGGAGCTGCGTCTTTACAGCAATTACATCACAGGCACCATCCCTGCTTATTTCTGCCAGTTGCGTCGATTGGTATCTTTGTATCTGTCAAGCAATCACCTGACAGGAGAATTCCCACAATGTTCAGATAACTACAAAGCACTACCACCGGATGATCTGGATCCGTTCTTCTCGCCTTATTTTGGCGCCGCATGTCTACAATAG
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| Protein seq | NGGSTISSDLSWLLGLSSLRHLDMSWVDLSAVRDWVHTVNTLSSLKVLRLRGCKLESAISTMSHFNLTRLEVLDLSVNKFNASIQQKWLWDHKGIKELYLTEGHWFGSIPDAFGNMSALQVMDLGHNNLMGTIPTTLQHLCDLQVVSLYDNYIDGDATEFMERLPRCSWNKLREMDLHSTNLSGELPVWIGKLSSLDFVDLSHNTLTGELPVGFGALRNMIYLNLGWNNFTGQISEEHFSSLLNLKYLYLSGNSFKQMVFEEDWIPPFRLKVAHLRSCRLGPKFPSWLKWQTEIRVLDVSGTCISDSLPVWFKTVFSQAYSLNLSDNQLCGTLPRTPEDMLAMVMDLGSNNLTGQVPRFPVNITYFDLSNNSLSGPLPSDLGAPRLEELRLYSNYITGTIPAYFCQLRRLVSLYLSSNHLTGEFPQCSDNYKALPPDDLDPFFSPYFGAACLQ |
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| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0468500 | OsNip_07t0468500-01 | Chr07 | 16723268 | 16726019 | + | RAP2018-11-26 | ||
| CDS seq | AACGGAGGGAGTACTATTTCTTCAGACCTGTCATGGTTGCTAGGGCTGTCATCTTTGAGGCATCTTGACATGAGTTGGGTGGATCTTAGTGCCGTCAGGGACTGGGTCCATACCGTCAACACGCTCTCTTCCCTGAAAGTTCTTCGCTTGAGGGGCTGTAAACTTGAGAGTGCCATCTCTACCATGTCACATTTCAACCTCACACGTCTTGAGGTCCTCGATCTTTCAGTCAACAAATTCAATGCTTCGATTCAGCAGAAATGGCTTTGGGATCACAAAGGCATCAAGGAGCTCTATCTGACAGAAGGCCATTGGTTTGGGTCCATTCCGGACGCATTTGGTAACATGTCTGCACTTCAGGTTATGGATCTTGGCCACAACAACCTAATGGGGACCATACCGACAACCCTGCAGCATCTGTGTGATCTGCAGGTTGTTAGCCTATATGACAACTATATTGATGGGGACGCAACAGAATTCATGGAGAGATTACCGAGGTGTTCATGGAATAAGTTGCGAGAGATGGACCTGCATTCTACGAATTTGAGCGGTGAGCTGCCGGTTTGGATAGGAAAGTTGAGCAGCCTGGATTTTGTTGATCTCTCACACAACACACTGACTGGTGAGCTGCCTGTGGGTTTTGGAGCACTTAGAAACATGATTTACCTAAATCTCGGTTGGAATAATTTCACCGGACAGATTTCCGAGGAGCATTTTTCAAGTTTACTGAACTTAAAATATTTGTACCTCTCTGGGAACTCTTTCAAGCAGATGGTCTTCGAGGAAGATTGGATTCCTCCATTCAGACTGAAGGTAGCACATTTGCGGTCGTGTCGATTAGGTCCCAAGTTCCCATCATGGCTAAAATGGCAAACTGAAATCAGGGTGCTTGATGTCTCAGGCACGTGCATAAGTGATTCTTTGCCTGTTTGGTTTAAGACCGTTTTTTCTCAAGCTTACTCACTGAACTTGTCGGACAATCAGTTATGTGGTACCTTACCCAGAACTCCAGAGGATATGTTGGCAATGGTGATGGATCTTGGGTCCAACAATTTGACAGGTCAAGTTCCACGCTTCCCTGTAAACATCACCTACTTTGATCTCTCAAATAATTCTTTGTCCGGGCCACTACCATCTGATCTTGGAGCTCCCAGGTTAGAGGAGCTGCGTCTTTACAGCAATTACATCACAGGCACCATCCCTGCTTATTTCTGCCAGTTGCGTCGATTGGTATCTTTGTATCTGTCAAGCAATCACCTGACAGGAGAATTCCCACAATGTTCAGATAACTACAAAGCACTACCACCGGATGATCTGGATCCGTTCTTCTCGCCTTATTTTGGCGCCGCATGTCTACAATAG
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| Protein seq | NGGSTISSDLSWLLGLSSLRHLDMSWVDLSAVRDWVHTVNTLSSLKVLRLRGCKLESAISTMSHFNLTRLEVLDLSVNKFNASIQQKWLWDHKGIKELYLTEGHWFGSIPDAFGNMSALQVMDLGHNNLMGTIPTTLQHLCDLQVVSLYDNYIDGDATEFMERLPRCSWNKLREMDLHSTNLSGELPVWIGKLSSLDFVDLSHNTLTGELPVGFGALRNMIYLNLGWNNFTGQISEEHFSSLLNLKYLYLSGNSFKQMVFEEDWIPPFRLKVAHLRSCRLGPKFPSWLKWQTEIRVLDVSGTCISDSLPVWFKTVFSQAYSLNLSDNQLCGTLPRTPEDMLAMVMDLGSNNLTGQVPRFPVNITYFDLSNNSLSGPLPSDLGAPRLEELRLYSNYITGTIPAYFCQLRRLVSLYLSSNHLTGEFPQCSDNYKALPPDDLDPFFSPYFGAACLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.300981 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g28570 | RBH | 0.0 | 0.0 | 0.334898 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0468500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0014170 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0014050 | RBH | 0.0 | 0.0 | 0.723054 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0014030 | RBH | 0.0 | 0.0 | 1.698943 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013930 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0003230 | SBH | 0.0 | 7.114727 | 6.316383 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0278200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0009540 | SBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0288800 | RBH | 0.064343 | 0 | 0.037831 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0003220 | SBH | 0.0 | 0.064857 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0003230 | SBH | 0.0 | 2.392072 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0003240 | SBH | 0.0 | 3.364720 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0014060 | RBH | 0.048948 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0013920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G013850 | RBH | 0.0 | 0.0 | 0.486948 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0013730 | RBH | 0.0 | 0.0 | 1.102379 |
