Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0029000 | OGI:06084800 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:31705787-31709475 | ||||||||
| Gene Symbol | RLCK218, OsRLCK218 | ||||||||||
| DNA seq | ttcacacggtttacgtagatttataggtttttcataagaactctacagaactgtaagattatatcttgcagcaaactgggaaatcttgtgcaatcgaaacactttgcatgctccaaattattcgcattgatcatcatctctctctacaatacaaatgaatcaatgatcgatctctccacaatttgttcctcacgcactggttgaccgtcgttgaccgcagcctcctccggtgactgatctgacgtcacctcttcgccggcggcaggcggcggtcgccgtccttgtcggccgccgtcgtcgtcggtggctccatctggagcaccctctcgagctcctcgacgacctccctcatcgccggtcgctccttggggttcttgacgaggcagcggtcggccagccgcgccacctgccgcgccgccgccgccgggtaccggccgcccagccgcgggtccatgatcgaccggaagctctggctctccggcgggtggcggcgcacccaccccagcagcttctgctcctccgccggccggctccgctccagcgaccgccgccccgtcaggatctcgtacagcaccacgccgaagctccacacgtcgctcttggtcgtcaggtgccccgtctcgatgtagtccggcgccgcgtacccgtgcgtccccaccacctgatcgccgccggcgagatcgccatcatcatcatcatcactcgggctcatggatcggatgggatgaattgattgttcgcaatggattttgcacttaccgcggtggagacgtgtgtctttccttcagttggcccctctcttgctagcccaaagtctgaaagttttggcttgaaatcggcatcaagaagaacattggctgccttgaaatccctgtatatcacctgccagactaagaaactacggatcagaattcagatatttggcacagatttcagattgatcatatcgttcttgaacctaacagaattcagataggacaatgcttactagtagcaatactacagatgctaaactaatggttcagttaagagtttcagagttcagaattcagatattgggacagataccagattgatcatatcattcttgaacaataaagaattcagataggacaatgcttactactagctgctacaggtgctaaactaatggtccagctcagagtttcagagttcaaaattcagatattgggaagatgccagattgatcatatcatacttgaacattaaagaattcagataggacaaggcttactactagctaccgcaggtgctaaactaatggttcagttcagagtttcagaattcagacaatgtatcctgtgaggcatctatattttgagttttatggattcagagaggaggacaatgctttggagggcacctgaacttcttgcaggccttcatggaggtagtctaggccccgcgcggcgccgatcatgatctgcagcctcaatctccacgagaggggaggatgagctcggttgaacagatgatcatctaggctcttgttgggcatgaactcgtagaccagcagcctgtgcttgcttgtttctgaatccactgcacaatagccaacaagcctcactagattcgggtgctcaagaacacctaggaattggacctcagccagccattgcttgtgcccctgaaatcagaaaaaaaaaagaaaaacataactttcaatctgttgatatttaaaaaaaaatgcaatctttgatttaacaattgaaaattgcatggattttgtcctatgcactggcaatctggcatcaagttttggcgtgattaagcttggtacgttgtttataacgtgattctgaattctggaatttagtaggttgacttgggatgctgtccggaccattgttcacgtggtttggtgtgtgatctgtggttgaagttgacatgtgtgggtgtccttgtcctacgggatgtgtttatctatttatggaattgtcacgaggctaagaatttcatatgatttcggtgcaaaagaacaatatcctgagtttgattttaggtctcgatccaaatccaaatcaggatcgcttgttggtaactattgctggttgaagaacattttcagcagtagtaaatctgtagtgttagcataccaaaatgtgtgaatccgaaaaatatatatttaagtgcatgccgtctttctgaatcttctgtgaagattgtacgctacgagtcttgaatgtagtctagagaaagtaaaagcgaagttcttttttgaaactctgaaaaaacatgcagccatgtggtcagtgcccaagctgaaaagacaaaatcttcaagttcttcttttgccattcaatcgtcctgatgaacaaattcggtacgttttgacaaatctagccaaaatcaaatgcaccatggcgaattttcgagaggagcaaatgcaaatcagagggaggagagatgggagtacagctaactgatactgtactgacctgcaggctgcgctggttgaggcgcttgacggcgaggacgacccggccgccgccgccgccggcggcggagcggaagaaggcgcggtagacggagccgaagccgccctcgccgatcttgagcgcgcggctgaagccgttggtggcgctgctgagctcgtcgaggtcgaacacccgcagccgctgcgcgcccctctcgtccgacagctcctggatgctcctcgtcggcgtcgacgccgatgatgccttgctcttctgcccgtccgacgtcggcgccggcgacctggcccccgacgccgccgcccgctggttcttggccttgctcttgaacgcgaagcaccccatatctgatgggctagcaaattaaacctgagaggaggcctccttgctgattaaaaacaccaagaaccaaatctttggagagtagcatccgaaaaaaaagaccaagaactctactaattggagacacttttaatcccagtgagagagagctcaaattagctttgataaagacagctaaaattgcatggaaaaattaacacgaggaggaactaggaagacgacgacgtcatatggatcatgtggttggaatccatgaacaagtggggggcgagaagaagaagaagaagaagacgactcgcgtggaatcaatcgagagagaaaagaggacacgtaccgtcgcctcgcctcgcctcgcttccgcgtcgttcgttcgcggcgatcccaacgcacacgccgcgtctcctacttgtaccatcacactaactgtacaccagtcaacaagatcaatgaagagagagtgtactgttcttaattgtttttttcttaggataaaatcataaaataataaggaaatttattgttacaatcaacatagcatggaggaatgaatatacttacctcacctgattcattgctccatatctgcatatcagcatctttctttcttcaacgtgttcacgtcaaaattgaaagtttagttgaaattgaaacgatgtgacggaaaagttgtaagtttgtgtgtagaaaagttttgatgtgataaaaaagttgaaagtttgaagaaaaattttggaattaaactcagcaatagtagtaataactgtttgggtcaaaattcaaagtgtttgttggtggttgaaatggtcaaaccaaaagctttttcttctacctgagaaacaaaggggccatcaatctaaatgctgagtgtgcaaaatatgctcatgcctcttt
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| CDS seq | atggggtgcttcgcgttcaagagcaaggccaagaaccagcgggcggcggcgtcgggggccaggtcgccggcgccgacgtcggacgggcagaagagcaaggcatcatcggcgtcgacgccgacgaggagcatccaggagctgtcggacgagaggggcgcgcagcggctgcgggtgttcgacctcgacgagctcagcagcgccaccaacggcttcagccgcgcgctcaagatcggcgagggcggcttcggctccgtctaccgcgccttcttccgctccgccgccggcggcggcggcggccgggtcgtcctcgccgtcaagcgcctcaaccagcgcagcctgcaggggcacaagcaatggctggctgaggtccaattcctaggtgttcttgagcacccgaatctagtgaggcttgttggctattgtgcagtggattcagaaacaagcaagcacaggctgctggtctacgagttcatgcccaacaagagcctagatgatcatctgttcaaccgagctcatcctcccctctcgtggagattgaggctgcagatcatgatcggcgccgcgcggggcctagactacctccatgaaggcctgcaagaagttcaggtgatatacagggatttcaaggcagccaatgttcttcttgatgccgatttcaagccaaaactttcagactttgggctagcaagagaggggccaactgaaggaaagacacacgtctccaccgcggtggtggggacgcacgggtacgcggcgccggactacatcgagacggggcacctgacgaccaagagcgacgtgtggagcttcggcgtggtgctgtacgagatcctgacggggcggcggtcgctggagcggagccggccggcggaggagcagaagctgctggggtgggtgcgccgccacccgccggagagccagagcttccggtcgatcatggacccgcggctgggcggccggtacccggcggcggcggcgcggcaggtggcgcggctggccgaccgctgcctcgtcaagaaccccaaggagcgaccggcgatgagggaggtcgtcgaggagctcgagagggtgctccagatggagccaccgacgacgacggcggccgacaaggacggcgaccgccgcctgccgccggcgaagaggtga
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| Protein seq | MGCFAFKSKAKNQRAAASGARSPAPTSDGQKSKASSASTPTRSIQELSDERGAQRLRVFDLDELSSATNGFSRALKIGEGGFGSVYRAFFRSAAGGGGGRVVLAVKRLNQRSLQGHKQWLAEVQFLGVLEHPNLVRLVGYCAVDSETSKHRLLVYEFMPNKSLDDHLFNRAHPPLSWRLRLQIMIGAARGLDYLHEGLQEVQVIYRDFKAANVLLDADFKPKLSDFGLAREGPTEGKTHVSTAVVGTHGYAAPDYIETGHLTTKSDVWSFGVVLYEILTGRRSLERSRPAEEQKLLGWVRRHPPESQSFRSIMDPRLGGRYPAAAARQVARLADRCLVKNPKERPAMREVVEELERVLQMEPPTTTAADKDGDRRLPPAKR |
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| Function | Probable serine/threonine-protein kinase PBL19 [UniProtKB/Swiss-Prot:Q9LTC0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0029000 | OsLima_06g0029000.01 | Chr06 | 31705787 | 31708909 | - | NAM | ||
| CDS seq | atggggtgcttcgcgttcaagagcaaggccaagaaccagcgggcggcggcgtcgggggccaggtcgccggcgccgacgtcggacgggcagaagagcaaggcatcatcggcgtcgacgccgacgaggagcatccaggagctgtcggacgagaggggcgcgcagcggctgcgggtgttcgacctcgacgagctcagcagcgccaccaacggcttcagccgcgcgctcaagatcggcgagggcggcttcggctccgtctaccgcgccttcttccgctccgccgccggcggcggcggcggccgggtcgtcctcgccgtcaagcgcctcaaccagcgcagcctgcaggggcacaagcaatggctggctgaggtccaattcctaggtgttcttgagcacccgaatctagtgaggcttgttggctattgtgcagtggattcagaaacaagcaagcacaggctgctggtctacgagttcatgcccaacaagagcctagatgatcatctgttcaaccgagctcatcctcccctctcgtggagattgaggctgcagatcatgatcggcgccgcgcggggcctagactacctccatgaaggcctgcaagaagttcaggtgatatacagggatttcaaggcagccaatgttcttcttgatgccgatttcaagccaaaactttcagactttgggctagcaagagaggggccaactgaaggaaagacacacgtctccaccgcggtggtggggacgcacgggtacgcggcgccggactacatcgagacggggcacctgacgaccaagagcgacgtgtggagcttcggcgtggtgctgtacgagatcctgacggggcggcggtcgctggagcggagccggccggcggaggagcagaagctgctggggtgggtgcgccgccacccgccggagagccagagcttccggtcgatcatggacccgcggctgggcggccggtacccggcggcggcggcgcggcaggtggcgcggctggccgaccgctgcctcgtcaagaaccccaaggagcgaccggcgatgagggaggtcgtcgaggagctcgagagggtgctccagatggagccaccgacgacgacggcggccgacaaggacggcgaccgccgcctgccgccggcgaagaggtga
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| Protein seq | MGCFAFKSKAKNQRAAASGARSPAPTSDGQKSKASSASTPTRSIQELSDERGAQRLRVFDLDELSSATNGFSRALKIGEGGFGSVYRAFFRSAAGGGGGRVVLAVKRLNQRSLQGHKQWLAEVQFLGVLEHPNLVRLVGYCAVDSETSKHRLLVYEFMPNKSLDDHLFNRAHPPLSWRLRLQIMIGAARGLDYLHEGLQEVQVIYRDFKAANVLLDADFKPKLSDFGLAREGPTEGKTHVSTAVVGTHGYAAPDYIETGHLTTKSDVWSFGVVLYEILTGRRSLERSRPAEEQKLLGWVRRHPPESQSFRSIMDPRLGGRYPAAAARQVARLADRCLVKNPKERPAMREVVEELERVLQMEPPTTTAADKDGDRRLPPAKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0029000 | OsLima_06g0029000.02 | Chr06 | 31705855 | 31709475 | - | IsoSeq | ||
| CDS seq | atggtacaagtaggagacgcggcgtgtgcgttgggatcgccgcgaacgaacgacgcggaagcgaggcgaggcgaggcgacg |
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| Protein seq | MVQVGDAACALGSPRTNDAEARRGEAT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.244800 | 0.068727 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0714900 | RBH | 1.915914 | 2.863142 | 5.813877 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g50100 | RBH | 1.636353 | 1.799629 | 1.193064 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0714900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0029090 | RBH | 0.303555 | 0.000000 | 1.540230 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028910 | RBH | 0.645190 | 0.000000 | 0.477945 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0029050 | RBH | 1.270808 | 3.960706 | 3.394549 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0028610 | RBH | 0.140829 | 0.066651 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0029100 | RBH | 2.321355 | 4.167887 | 3.747812 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0476300 | RBH | 2.9345005 | 6.1319715 | 3.600995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0028470 | RBH | 0.230017 | 0.389677 | 0.811528 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0460000 | RBH | 4.4097055 | 8.267395 | 3.033364 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0029080 | RBH | 0.248181 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028650 | RBH | 0.000000 | 5.532347 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0029300 | RBH | 0.321930 | 0.278887 | 0.621132 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028940 | RBH | 0.311336 | 2.943203 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028820 | RBH | 0.778140 | 0.486558 | 0.879088 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028920 | RBH | 1.436412 | 3.591503 | 7.077378 |
