Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0023660 | OGI:06073330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:27324282-27333313 | ||||||||
| Gene Symbol | DCM1, OsDCM1, SAW1 | ||||||||||
| DNA seq | atggatccgcctcccccgttcgaccacccgctccaccgccgccactactccgaccaccaccacttcccccccggcggaagcggaggcagcggcggcgctgcttctgcggctgcgcgctccaggtacgagtacggcggcggcggcggcggcggctacgagtcccactctcaccaccagtaccacctccccgaccaccaccaccaccaccaccaccccccaccgcgcgtccagcaccatcaccaccaccaccaccagcagctgcccgcgccaacgccgcccccgccgccgccgcctcccctgccgcagcaccgcctcgagccccctcctcctcactacggcttccctccccgcggccatcccgacgcctactcgccgccgccgtaccacgacccgtccccgcaccaccactaccatcgccacgggggcgacgacttcctccccgccgacgagatccgccgcgtcggtggtggtcaccaccaccaccaccaccatccgcagctgcaacagcttctcccgtgggaggaggctgaggaagagaggcgccgctacggcggcgccacccagcagctccgactatcgccgtctggtcctcggaaaaggcagcgcggcgctgtgcacgacgccgacgttgagagcacctccagttctggcccgcctccccgccgccagaggcagcaaccccacccggactatgctctggatgatagttttgtagataggaacaatgcccatcctggttacatggtccatgagggcttctcaatccacagtgatagcaaggttagcaggaagatccagatgcctacgcagatggcactgcctggctctccccatggcacgagtgctgggtatgcgaggcgagccccacagaaggttgccccttctagagtgtctgtgtggcaccgaatcgaggagaaccctgcaatgtatgaaccgtcttctccgccgccgcatatgcctaaggaggtgcacgtctcgccgtgcaagtcgaacaatgttgctcctgcttcgaaggagttggccagtgtgatttctgtggattgtagagggaagagtgctgatggtaatgatggtgatagtaatacaggaacaaagaagaatcctgtcaagaagaatgaaaaggtgttggcttcagtgcttgtgaagcctccaatggagcccaaggaaaaggaagtggctgctaagaagatgctcaagaaacctgataaggttcagaagaatgcagtgcattccaatattagaagtttggtctcaactccctgccctggtgctggtgcgaagaaagtgaagaagatagttataaaaaagattgttaggaagatcaatgggaaaggtaatcaaaacagtaccccggttgtctcagaaaagagagatggtattgatgctaatgcttgtgagaaagaagagggtgagatcactacatcatcttttgagaaggatgttatttctgcacatgatccgatcgccgttagtgacacagctggttttggtaatgctgtaaatgatcagaagcaaaaaaacaccaacttcacaaatccaagtggaaggaatgctgcttcagccaatggatctatggaaattcccgatccaccaaatggtagtgggagtgcacatcctggaaaggaagaggttctaagcccaaagaatccagttgataatagcaatgcttctttagtcgatgaacctatagaagtgcttgagaaaagtgggactgagcatcctaggaaggagcatgatatgagctctattggttcaggtgtaaatgatgcttttgcagatgcgaacaatcatactcagaaggaggttggtgaaatgaatgtcgcagttgcaatcaattctgtgagagtttctgatgcacgggaagttcctaggtgtgatgattccagcatggaagagagcaaagtacctaaggatgtggatgcaaacaatgctgtttgcatggatggagttgcttctaattgtgatacaacagaagtctgtggaaatgaagatgcaaggagggaatgtggaaaaaaattgattggcataaatgacgagaaagctttccttttaaacaattctgccagaagttctagtacatctgatacttgcatgactgctgtagagggtgctcagaaaaaagagggtataattctcactggttcaagtgaaaagagcatcggctttttaggtgattctgtgggaactcataggacaacagaatttggtgccagtaaggatgcccccaacgaaggagatgacatgccaagccatcctagtgaaaaggattttatgtcattgaactcttgtggaggtcttaattacacagaagttagtgaaaaggaggatatccaggagaaagaggacagagtaccatggaatcaattgtagcttgtacttctagtggaaatgaggacatacaagtgaatgagggcagaaaacccatggagttaagtgaagctaatgcttttagtggaagcggggatagccaaggtaaagagtgtagaatacccatgggttcaagtgaaacaaatacatcttccgtgaatcatgtgaatgcttctaatgaaaaggatttcagcttgagtgaggacacccagaagaaagagagccacaggcccatagaatcatgtgaaaatactacttttgaaattatgcaccatgaagaagctcctagtacagaagaggttattacaggtgtgtcacttgggagaaaggtggctgaaggcccaacgaggtcaaatgaaagatgttcaggtgctagaggtaattctgcaactactttaaagtttggtttagcttgtgcaactgaggataatcagatggaagatttactcaacaatagaactgctttaaatgaaacagatgatcctcttgatgctgaggattcccctgtgtttgttcctccatcttccagaaatgtagaaagtacatatgcatcgccattatatgatcctatggaggattctaccagtgatggtattttgaatattggtttgggaaggaacactacatctaaggcagcagaacttttggatcttcatagagaccatatttcttctgagaatgattctttgatacattcccggggcacttcatctgtatctggtaaccgtgagcagtctgtccctacagctttgacacttggtagcaatatctattttagtagtgcggaaactgatgatcggcctgaggaaagacatgagctagtagtggaaggtcagcaaggattaactgttgagacaacaagcaaacttgatagccctggcaaaatagaagtcctgaatggtgcgggcttcatcagtacaggtattcaaattggctgagtttacctccatcaatcaacagcatggagatgtctggcaatttctgaataatggttttactgttagtaagggtaggctaggtttagaccagagtatggatgatgctacttcagtgagtcaggatcatgatattgcacaagatatggaccagcgtggaagtgaggatgctttctttagtcaggatcacagcattaggttatgtggtagcaatttgcctcattcacatttgttggcacccaaagagagcagcatgaatggtgaggatcagagtggcattgttctcacaggtttgcaccctattaattcagtaaatgttttaggtcactatggttaccaaacagatgatattcctgtggataacctgaataagcttccctcagctttagaatcttctgatgctatggatgcagatcaagtttcttctcaggtatgcgttaatccagatcacaccaatgacagtaatactgagaatgctggggttgagtcaaatgcaaagcaggatctgttgtcttcttggattgaagccattgtatcagaggctaaaaaggaacacccaccatgcaagtccactccgctcactgttggcttgccagataagttattagaaccaaaggacagcgacaggaaaacattactggaaacagtggtgccttctgcagtaaaatctcctcagataaattttgcaagctcaacactccaaaaggtagctcctaaacaagtaacattgcctagttcatcccgagaacccactcgagcaaatcaaaatgcaaggcacaggacatggcatcgtggcaacatagcatcttctagttcatctttgcatgcttcacagcctttaggattacccccaaaattaccacccaagaagaatgacaaagctcaaaactcttatatacggaaaggtaatgctcttattagaaatccatcaaatggtaatcatcctcattcttctacaggtcacgatactcaaaataagttgaataaacctgtggtaaggagaagcatgaactttgtaaggaaagctgatacgaaagacttagcaaattctaacatctcagttgaaagacccaagacccctcctttaccacttcacacaaaatccagctgccctacaacccttttggagccattgtctcaaactttgcagaaacagcatggtcatgatgctgaaaaggaggatctcactgggcagccaaagtcaggcgttgataactcaagcatcaaaagtgcacaaaaatctgaaccctcggatcctagtaaagtggtttatgttaggcccaaatcaaaccaactggttgctgcacagaggcaacaccctattgatttagtcaacagtcccacagataagattctgtctctgcaggcacccatagcatctgatctatttaaagaaaaggaaaaatcaaattgttttgagttcctgctccccttctgatggtctgagtaccaaagaaacgttacctgctgagaattcaaattcagaagagaagaaagatctaatgattgcatgctctatcagtggtatccctggggtaaaggacagaccacaaaaaggtaatctattgtacaaaccatttgttacttcttcttcctttgcaaactttaccatctaatgaaaaccctaaaatttcgaagttcactagaattttgttttgtaaccataaacaataaccacctttacacctttggaaaacttataatggtcttccatttattcaaTgttcaatcaatgaacaggaactatttcagtgtaaggaactttatctaaacttaaagataaaaggttaagaaccatactccaaatgtgagttagagccttacaggttaataaccaaattaggataatgtggttttaaacaagccatttgtttaatatcttagccacactgaagctctagacagggatcactattctggttatgcttattaaatgatggctttccattttgcttatggtttcatcatcccatttctttaccttttatggtgtagcatatgtttgtttactactactattattttcttgtgctatttgttttcggttctgctaaatttgtggcgccacaattttaccttgatttcagtcgattctttgacccacacgattgacgccgagattcgtgctcttgtacataaccaccagaaatacgataacttcaccgagcagatgtgttacgttgggtactgctacatgctcgtacacagttgcacattggtcaaagtaagagaccgtacgaatgagaacacgtaacgagagagggataaaatagttagtgttatataattacttcctacttacactataattacatgctatttacatatgtaattttagaacttacatatgtaattttgagacttacagtgtaaatacattaaaattacatatgtaattttagggacttacaatgtaaatacattctgactattttttcatgaaaaatatggcgccatatagatagatagtccctttgtttttgcctcttgatctgttactttggagggtacagcattatgtaaactgataatgtaatattgaagcaatgctaatcccttcgtactatattatatgcatacacttctctcaatgcagctcttcagacaacaaataatgtggggcgtttctctcatgtgtggacactcaatgggcaacagccacagaggaaaggttttatgggcagtagtcatatgaatgccttcccacgtatacttccatggaaaagaaaaatattctgcaagaattttagaagcagtcacatgtcgaatgtgagctccatacgaattgtcaggtaaatatttcagtctggtcttttctctgtacctatttctattcattcactttactttattgaattttcttactggcatgtcctgatcctctataatttgatagaaaattgctgcaaacaaggaagagagatatgatttatactgtctcaactgatgggttctctctacggaaatctggtgtgttaagtgttggtggatcaagtttgaaatggtcaagatcccttgagaagcgttctcaaaaggtcaacaaggtatttcacttcagtgaaatttttgttcctaatttcttgttcagtcatcaacagaaatgattccaggagttctataattctattcatctgatcatgatatctaggagtttccagctcaggttgtgctgggtatacacttgagttattagaacaactatacgattttaacactctttcactggttaaactgtaagctctaaagacagggatgttgcaatgaatgcccaccttatgctggtgccttttttttttttaaaaaaaaacaatgcctatatctatagcttttggatccatccatcacaatcatattttatgatctggagcatatgacctgaagaaattctgttatctgataaatgatgtcgccctgctaagactcatttgtttgatactacatgagcatctgaattttaaatagtgtaaccatggatggccttttaaaagaccatatactaaaagctacagggtggagtgactgtccaattgctgcatttagaacatcagtattaatctatggtgcttttattctcattattaaacaaaaatcaaattgcactctggattgcaggaagctacattggcactcgctgaagttgaaagaaggaaaagggagaaacggaagcggcagtctctccatgataagggaggtaatggtaatgtgttaatttgtgaatttgacatggttaaacttttcttattagtactgatgaagaagatttaactagttctcaagtaaaactctcatgctccttcatgttaaaatttcaacttaagttccaacttaccaaataaacatttgagctgctatagacagaattgcattatggcattactttatagagcacaaggaacctgttttgttactctagtttgagcactgtggcttattgatcacctttttaggtgcttaccatcgatgagttcatatttcttgtggaaacatgtttccttgaattgcctttctctgcaaacatatattttactgattaatcattttttttcattagcttttctttgtttacgctctatgatgtcttaattttgcagatcatcaatttgaatctgtcactggcaatcaattaagaaacagctgccaatcgtcttccgatttgagaaagccatcgacttgcaatgagtatgttatgaacacgtgttgagtatgttatgaacccttttatcatagatattctaatttgactcattcccttgttttatgtttgaagcagatatgtgcgcgttagcaaaggtaaccaactggttagaaatccgaagaatgtaatccgcatgctagcaagtgacaaagttcgatggagtttgcacactgtgagatcacgcctagcaaagaaacaacagtactgccaattcttcactcggtttggcgagtgcaaaaaacccaggggcaaatgcccttatattcatgaccgagctaaagtgactatatgtactaaatttcttaaaggattgtgttctaatactagttgcaaactgactcacaaggtaaggtctttcttcttgattctatactaatcttgcattgacattttttttcatttcaagagcatgtattgcaggtccttccagaaagaatgccagattgttcttattttctgagaggtgattcattccagtctaacgtcattactttctctttcttctgcaaaaaaatgtcgtgcttacattttggcatcacatgcaggactctgtaccaacatagcctgcccctataggcatgtgaaagtgaacttgaatgctcctgtttgtgaagacttcttaaaaggatattgtgcatatggtgacgaggtatgtgatgctatcactagatatctgctgatctttatcaaatttccgctcgcagaatcacagaataacgtagatgcttgttcagtttcctacattttagctaaaggaggaattcagcatcaggtgcacaaaaaactgttcagtgcgataggctgttcttatattccatcaatcaaataataactccttgcgctttaaatacttagttgatataatccactgcatgagattataggagctctttttcctgtaatctaggaaggcatgcatctgattgttcagtctacatggcgtgtctagtgttatttagtgttgatatatataattagatgaaaatgattttgctggtagttttttgccatgtacccgttagccttttgaactttgggggctttcacaaacctttgtgtattctgaataaagatcactaatctttttcatgatcttgaaataatttctttacaagcagtgtcataaaaagcacagctatgtatgtcctgtcttcgaggcaactggagagtgcccacaaggatctagatgcaaacttcatcacccgaagagcaaagtcaaatccaagagcagaagaccagatttcttgcaaaacagtagttggggccggtattttgatgccagcattgaccatcaagatgagacaaggaaagtttctttagacgaagacgagagagagaaacctcaacgtgttttctctgatggggatttgggctttatcagcttggatgatgatgcggatgaagatgttacagctttagatgcgtcagatgatataccgctgatggaattggactcgggggatttaagtgcgcagactgataatcttgatgcactaatcaagccacttcggatcatgagaacagcaagagtttga
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| CDS seq | atggatccgcctcccccgttcgaccacccgctccaccgccgccactactccgaccaccaccacttcccccccggcggaagcggaggcagcggcggcgctgcttctgcggctgcgcgctccaggtacgagtacggcggcggcggcggcggcggctacgagtcccactctcaccaccagtaccacctccccgaccaccaccaccaccaccaccaccccccaccgcgcgtccagcaccatcaccaccaccaccaccagcagctgcccgcgccaacgccgcccccgccgccgccgcctcccctgccgcagcaccgcctcgagccccctcctcctcactacggcttccctccccgcggccatcccgacgcctactcgccgccgccgtaccacgacccgtccccgcaccaccactaccatcgccacgggggcgacgacttcctccccgccgacgagatccgccgcgtcggtggtggtcaccaccaccaccaccaccatccgcagctgcaacagcttctcccgtgggaggaggctgaggaagagaggcgccgctacggcggcgccacccagcagctccgactatcgccgtctggtcctcggaaaaggcagcgcggcgctgtgcacgacgccgacgttgagagcacctccagttctggcccgcctccccgccgccagaggcagcaaccccacccggactatgctctggatgatagttttgtagataggaacaatgcccatcctggttacatggtccatgagggcttctcaatccacagtgatagcaaggttagcaggaagatccagatgcctacgcagatggcactgcctggctctccccatggcacgagtgctgggtatgcgaggcgagccccacagaaggttgccccttctagagtgtctgtgtggcaccgaatcgaggagaaccctgcaatgtatgaaccgtcttctccgccgccgcatatgcctaaggaggtgcacgtctcgccgtgcaagtcgaacaatgttgctcctgcttcgaaggagttggccagtgtgatttctgtggattgtagagggaagagtgctgatggtaatgatggtgatagtaatacaggaacaaagaagaatcctgtcaagaagaatgaaaaggtgttggcttcagtgcttgtgaagcctccaatggagcccaaggaaaaggaagtggctgctaagaagatgctcaagaaacctgataaggttcagaagaatgcagtgcattccaatattagaagtttggtctcaactccctgccctggtgctggtgcgaagaaagtgaagaagatagttataaaaaagattgttaggaagatcaatgggaaaggtaatcaaaacagtaccccggttgtctcagaaaagagagatggtattgatgctaatgcttgtgagaaagaagagggtgagatcactacatcatcttttgagaaggatgttatttctgcacatgatccgatcgccgttagtgacacagctggttttggtaatgctgtaaatgatcagaagcaaaaaaacaccaacttcacaaatccaagtggaaggaatgctgcttcagccaatggatctatggaaattcccgatccaccaaatggtagtgggagtgcacatcctggaaaggaagaggttctaagcccaaagaatccagttgataatagcaatgcttctttagtcgatgaacctatagaagtgcttgagaaaagtgggactgagcatcctaggaaggagcatgatatgagctctattggttcaggtgtaaatgatgcttttgcagatgcgaacaatcatactcagaaggaggttggtgaaatgaatgtcgcagttgcaatcaattctgtgagagtttctgatgcacgggaagttcctaggtgtgatgattccagcatggaagagagcaaagtacctaaggatgtggatgcaaacaatgctgtttgcatggatggagttgcttctaattgtgatacaacagaagtctgtggaaatgaagatgcaaggagggaatgtggaaaaaaattgattggcataaatgacgagaaagctttccttttaaacaattctgccagaagttctagtacatctgatacttgcatgactgctgtagagggtgctcagaaaaaagagggtataattctcactggttcaagtgaaaagagcatcggctttttaggtgattctgtgggaactcataggacaacagaatttggtgccacttgtacttctagtggaaatgaggacatacaagtgaatgagggcagaaaacccatggagttaagtgaagctaatgcttttagtggaagcggggatagccaaggtaaagagtgtagaatacccatgggttcaagtgaaacaaatacatcttccgtgaatcatgtgaatgcttctaatgaaaaggatttcagcttgagtgaggacacccagaagaaagagagccacaggcccatagaatcatgtgaaaatactacttttgaaattatgcaccatgaagaagctcctagtacagaagaggttattacaggtgtgtcacttgggagaaaggtggctgaaggcccaacgaggtcaaatgaaagatgttcaggtgctagaggtaattctgcaactactttaaagtttggtttagcttgtgcaactgaggataatcagatggaagatttactcaacaatagaactgctttaaatgaaacagatgatcctcttgatgctgaggattcccctgtgtttgttcctccatcttccagaaatgtagaaagtacatatgcatcgccattatatgatcctatggaggattctaccagtgatggtattttgaatattggtttgggaaggaacactacatctaaggcagcagaacttttggatcttcatagagaccatatttcttctgagaatgattctttgatacattcccggggcacttcatctgtatctggtaaccgtgagcagtctgtccctacagctttgacacttggtagcaatatctattttagtagtgcggaaactgatgatcggcctgaggaaagacatgagctagtagtggaaggtcagcaaggattaactgttgagacaacaagcaaacttgatagccctggcaaaatagaagtcctgaatggtgcgggcttcatcagtacagatgatattcctgtggataacctgaataagcttccctcagctttagaatcttctgatgctatggatgcagatcaagtttcttctcaggtatgcgttaatccagatcacaccaatgacagtaatactgagaatgctggggttgagtcaaatgcaaagcaggatctgttgtcttcttggattgaagccattgtatcagaggctaaaaaggaacacccaccatgcaagtccactccgctcactgttggcttgccagataagttattagaaccaaaggacagcgacaggaaaacattactggaaacagtggtgccttctgcagtaaaatctcctcagataaattttgcaagctcaacactccaaaagcctttaggattacccccaaaattaccacccaagaagaatgacaaagctcaaaactcttatatacggaaaggtcacgatactcaaaataagttgaataaacctgtggtaaggagaagcatgaactttgtaaggaaagctgatacgaaagacttagcaaattctaacatctcagttgaaagacccaagacccctcctttaccacttcacacaaaatccagctgccctacaacccttttggagccattgtctcaaactttgcagaaacagcatggtcatgatgctgaaaaggaggatctcactgggcagccaaagtcaggcgttgataactcaagcatcaaaagtgcacaaaaatctgaaccctcggatcctaaagagaagaaagatctaatgattgcatgctctatcagtggtatccctggggtaaaggacagaccacaaaaagctcttcagacaacaaataatgtggggcgtttctctcatgtgtggacactcaatgggcaacagccacagaggaaaggttttatgggcagtagtcatatgaatgccttcccacgtatacttccatggaaaagaaaaatattctgcaagaattttagaagcagtcacatgtcgaatgtgagctccatacgaattgtcagaaaattgctgcaaacaaggaagagagatatgatttatactgtctcaactgatgggttctctctacggaaatctggtgtgttaagtgttggtggatcaagtttgaaatggtcaagatcccttgagaagcgttctcaaaaggtcaacaaggaagctacattggcactcgctgaagttgaaagaaggaaaagggagaaacggaagcggcagtctctccatgataagggagatcatcaatttgaatctgtcactggcaatcaattaagaaacagctgccaatcgtcttccgatttgagaaagccatcgacttgcaatgaatatgtgcgcgttagcaaaggtaaccaactggttagaaatccgaagaatgtaatccgcatgctagcaagtgacaaagttcgatggagtttgcacactgtgagatcacgcctagcaaagaaacaacagtactgccaattcttcactcggtttggcgagtgcaaaaaacccaggggcaaatgcccttatattcatgaccgagctaaagtgactatatgtactaaatttcttaaaggattgtgttctaatactagttgcaaactgactcacaaggtccttccagaaagaatgccagattgttcttattttctgagaggactctgtaccaacatagcctgcccctataggcatgtgaaagtgaacttgaatgctcctgtttgtgaagacttcttaaaaggatattgtgcatatggtgacgagtgtcataaaaagcacagctatgtatgtcctgtcttcgaggcaactggagagtgcccacaaggatctagatgcaaacttcatcacccgaagagcaaagtcaaatccaagagcagaagaccagatttcttgcaaaacagtagttggggccggtattttgatgccagcattgaccatcaagatgagacaaggaaagtttctttagacgaagacgagagagagaaacctcaacgtgttttctctgatggggatttgggctttatcagcttggatgatgatgcggatgaagatgttacagctttagatgcgtcagatgatataccgctgatggaattggactcgggggatttaagtgcgcagactgataatcttgatgcactaatcaagccacttcggatcatgagaacagcaagagtttga
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| Protein seq | MDPPPPFDHPLHRRHYSDHHHFPPGGSGGSGGAASAAARSRYEYGGGGGGGYESHSHHQYHLPDHHHHHHHPPPRVQHHHHHHHQQLPAPTPPPPPPPPLPQHRLEPPPPHYGFPPRGHPDAYSPPPYHDPSPHHHYHRHGGDDFLPADEIRRVGGGHHHHHHHPQLQQLLPWEEAEEERRRYGGATQQLRLSPSGPRKRQRGAVHDADVESTSSSGPPPRRQRQQPHPDYALDDSFVDRNNAHPGYMVHEGFSIHSDSKVSRKIQMPTQMALPGSPHGTSAGYARRAPQKVAPSRVSVWHRIEENPAMYEPSSPPPHMPKEVHVSPCKSNNVAPASKELASVISVDCRGKSADGNDGDSNTGTKKNPVKKNEKVLASVLVKPPMEPKEKEVAAKKMLKKPDKVQKNAVHSNIRSLVSTPCPGAGAKKVKKIVIKKIVRKINGKGNQNSTPVVSEKRDGIDANACEKEEGEITTSSFEKDVISAHDPIAVSDTAGFGNAVNDQKQKNTNFTNPSGRNAASANGSMEIPDPPNGSGSAHPGKEEVLSPKNPVDNSNASLVDEPIEVLEKSGTEHPRKEHDMSSIGSGVNDAFADANNHTQKEVGEMNVAVAINSVRVSDAREVPRCDDSSMEESKVPKDVDANNAVCMDGVASNCDTTEVCGNEDARRECGKKLIGINDEKAFLLNNSARSSSTSDTCMTAVEGAQKKEGIILTGSSEKSIGFLGDSVGTHRTTEFGATCTSSGNEDIQVNEGRKPMELSEANAFSGSGDSQGKECRIPMGSSETNTSSVNHVNASNEKDFSLSEDTQKKESHRPIESCENTTFEIMHHEEAPSTEEVITGVSLGRKVAEGPTRSNERCSGARGNSATTLKFGLACATEDNQMEDLLNNRTALNETDDPLDAEDSPVFVPPSSRNVESTYASPLYDPMEDSTSDGILNIGLGRNTTSKAAELLDLHRDHISSENDSLIHSRGTSSVSGNREQSVPTALTLGSNIYFSSAETDDRPEERHELVVEGQQGLTVETTSKLDSPGKIEVLNGAGFISTDDIPVDNLNKLPSALESSDAMDADQVSSQVCVNPDHTNDSNTENAGVESNAKQDLLSSWIEAIVSEAKKEHPPCKSTPLTVGLPDKLLEPKDSDRKTLLETVVPSAVKSPQINFASSTLQKPLGLPPKLPPKKNDKAQNSYIRKGHDTQNKLNKPVVRRSMNFVRKADTKDLANSNISVERPKTPPLPLHTKSSCPTTLLEPLSQTLQKQHGHDAEKEDLTGQPKSGVDNSSIKSAQKSEPSDPKEKKDLMIACSISGIPGVKDRPQKALQTTNNVGRFSHVWTLNGQQPQRKGFMGSSHMNAFPRILPWKRKIFCKNFRSSHMSNVSSIRIVRKLLQTRKRDMIYTVSTDGFSLRKSGVLSVGGSSLKWSRSLEKRSQKVNKEATLALAEVERRKREKRKRQSLHDKGDHQFESVTGNQLRNSCQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNVIRMLASDKVRWSLHTVRSRLAKKQQYCQFFTRFGECKKPRGKCPYIHDRAKVTICTKFLKGLCSNTSCKLTHKVLPERMPDCSYFLRGLCTNIACPYRHVKVNLNAPVCEDFLKGYCAYGDECHKKHSYVCPVFEATGECPQGSRCKLHHPKSKVKSKSRRPDFLQNSSWGRYFDASIDHQDETRKVSLDEDEREKPQRVFSDGDLGFISLDDDADEDVTALDASDDIPLMELDSGDLSAQTDNLDALIKPLRIMRTARV |
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| Function | Zinc finger CCCH domain-containing protein 7 [UniProtKB/Swiss-Prot:Q3ED78] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0023660 | OsLima_06g0023660.01 | Chr06 | 27324282 | 27333313 | + | NAM | ||
| CDS seq | atggatccgcctcccccgttcgaccacccgctccaccgccgccactactccgaccaccaccacttcccccccggcggaagcggaggcagcggcggcgctgcttctgcggctgcgcgctccaggtacgagtacggcggcggcggcggcggcggctacgagtcccactctcaccaccagtaccacctccccgaccaccaccaccaccaccaccaccccccaccgcgcgtccagcaccatcaccaccaccaccaccagcagctgcccgcgccaacgccgcccccgccgccgccgcctcccctgccgcagcaccgcctcgagccccctcctcctcactacggcttccctccccgcggccatcccgacgcctactcgccgccgccgtaccacgacccgtccccgcaccaccactaccatcgccacgggggcgacgacttcctccccgccgacgagatccgccgcgtcggtggtggtcaccaccaccaccaccaccatccgcagctgcaacagcttctcccgtgggaggaggctgaggaagagaggcgccgctacggcggcgccacccagcagctccgactatcgccgtctggtcctcggaaaaggcagcgcggcgctgtgcacgacgccgacgttgagagcacctccagttctggcccgcctccccgccgccagaggcagcaaccccacccggactatgctctggatgatagttttgtagataggaacaatgcccatcctggttacatggtccatgagggcttctcaatccacagtgatagcaaggttagcaggaagatccagatgcctacgcagatggcactgcctggctctccccatggcacgagtgctgggtatgcgaggcgagccccacagaaggttgccccttctagagtgtctgtgtggcaccgaatcgaggagaaccctgcaatgtatgaaccgtcttctccgccgccgcatatgcctaaggaggtgcacgtctcgccgtgcaagtcgaacaatgttgctcctgcttcgaaggagttggccagtgtgatttctgtggattgtagagggaagagtgctgatggtaatgatggtgatagtaatacaggaacaaagaagaatcctgtcaagaagaatgaaaaggtgttggcttcagtgcttgtgaagcctccaatggagcccaaggaaaaggaagtggctgctaagaagatgctcaagaaacctgataaggttcagaagaatgcagtgcattccaatattagaagtttggtctcaactccctgccctggtgctggtgcgaagaaagtgaagaagatagttataaaaaagattgttaggaagatcaatgggaaaggtaatcaaaacagtaccccggttgtctcagaaaagagagatggtattgatgctaatgcttgtgagaaagaagagggtgagatcactacatcatcttttgagaaggatgttatttctgcacatgatccgatcgccgttagtgacacagctggttttggtaatgctgtaaatgatcagaagcaaaaaaacaccaacttcacaaatccaagtggaaggaatgctgcttcagccaatggatctatggaaattcccgatccaccaaatggtagtgggagtgcacatcctggaaaggaagaggttctaagcccaaagaatccagttgataatagcaatgcttctttagtcgatgaacctatagaagtgcttgagaaaagtgggactgagcatcctaggaaggagcatgatatgagctctattggttcaggtgtaaatgatgcttttgcagatgcgaacaatcatactcagaaggaggttggtgaaatgaatgtcgcagttgcaatcaattctgtgagagtttctgatgcacgggaagttcctaggtgtgatgattccagcatggaagagagcaaagtacctaaggatgtggatgcaaacaatgctgtttgcatggatggagttgcttctaattgtgatacaacagaagtctgtggaaatgaagatgcaaggagggaatgtggaaaaaaattgattggcataaatgacgagaaagctttccttttaaacaattctgccagaagttctagtacatctgatacttgcatgactgctgtagagggtgctcagaaaaaagagggtataattctcactggttcaagtgaaaagagcatcggctttttaggtgattctgtgggaactcataggacaacagaatttggtgccacttgtacttctagtggaaatgaggacatacaagtgaatgagggcagaaaacccatggagttaagtgaagctaatgcttttagtggaagcggggatagccaaggtaaagagtgtagaatacccatgggttcaagtgaaacaaatacatcttccgtgaatcatgtgaatgcttctaatgaaaaggatttcagcttgagtgaggacacccagaagaaagagagccacaggcccatagaatcatgtgaaaatactacttttgaaattatgcaccatgaagaagctcctagtacagaagaggttattacaggtgtgtcacttgggagaaaggtggctgaaggcccaacgaggtcaaatgaaagatgttcaggtgctagaggtaattctgcaactactttaaagtttggtttagcttgtgcaactgaggataatcagatggaagatttactcaacaatagaactgctttaaatgaaacagatgatcctcttgatgctgaggattcccctgtgtttgttcctccatcttccagaaatgtagaaagtacatatgcatcgccattatatgatcctatggaggattctaccagtgatggtattttgaatattggtttgggaaggaacactacatctaaggcagcagaacttttggatcttcatagagaccatatttcttctgagaatgattctttgatacattcccggggcacttcatctgtatctggtaaccgtgagcagtctgtccctacagctttgacacttggtagcaatatctattttagtagtgcggaaactgatgatcggcctgaggaaagacatgagctagtagtggaaggtcagcaaggattaactgttgagacaacaagcaaacttgatagccctggcaaaatagaagtcctgaatggtgcgggcttcatcagtacagatgatattcctgtggataacctgaataagcttccctcagctttagaatcttctgatgctatggatgcagatcaagtttcttctcaggtatgcgttaatccagatcacaccaatgacagtaatactgagaatgctggggttgagtcaaatgcaaagcaggatctgttgtcttcttggattgaagccattgtatcagaggctaaaaaggaacacccaccatgcaagtccactccgctcactgttggcttgccagataagttattagaaccaaaggacagcgacaggaaaacattactggaaacagtggtgccttctgcagtaaaatctcctcagataaattttgcaagctcaacactccaaaagcctttaggattacccccaaaattaccacccaagaagaatgacaaagctcaaaactcttatatacggaaaggtcacgatactcaaaataagttgaataaacctgtggtaaggagaagcatgaactttgtaaggaaagctgatacgaaagacttagcaaattctaacatctcagttgaaagacccaagacccctcctttaccacttcacacaaaatccagctgccctacaacccttttggagccattgtctcaaactttgcagaaacagcatggtcatgatgctgaaaaggaggatctcactgggcagccaaagtcaggcgttgataactcaagcatcaaaagtgcacaaaaatctgaaccctcggatcctaaagagaagaaagatctaatgattgcatgctctatcagtggtatccctggggtaaaggacagaccacaaaaagctcttcagacaacaaataatgtggggcgtttctctcatgtgtggacactcaatgggcaacagccacagaggaaaggttttatgggcagtagtcatatgaatgccttcccacgtatacttccatggaaaagaaaaatattctgcaagaattttagaagcagtcacatgtcgaatgtgagctccatacgaattgtcagaaaattgctgcaaacaaggaagagagatatgatttatactgtctcaactgatgggttctctctacggaaatctggtgtgttaagtgttggtggatcaagtttgaaatggtcaagatcccttgagaagcgttctcaaaaggtcaacaaggaagctacattggcactcgctgaagttgaaagaaggaaaagggagaaacggaagcggcagtctctccatgataagggagatcatcaatttgaatctgtcactggcaatcaattaagaaacagctgccaatcgtcttccgatttgagaaagccatcgacttgcaatgaatatgtgcgcgttagcaaaggtaaccaactggttagaaatccgaagaatgtaatccgcatgctagcaagtgacaaagttcgatggagtttgcacactgtgagatcacgcctagcaaagaaacaacagtactgccaattcttcactcggtttggcgagtgcaaaaaacccaggggcaaatgcccttatattcatgaccgagctaaagtgactatatgtactaaatttcttaaaggattgtgttctaatactagttgcaaactgactcacaaggtccttccagaaagaatgccagattgttcttattttctgagaggactctgtaccaacatagcctgcccctataggcatgtgaaagtgaacttgaatgctcctgtttgtgaagacttcttaaaaggatattgtgcatatggtgacgagtgtcataaaaagcacagctatgtatgtcctgtcttcgaggcaactggagagtgcccacaaggatctagatgcaaacttcatcacccgaagagcaaagtcaaatccaagagcagaagaccagatttcttgcaaaacagtagttggggccggtattttgatgccagcattgaccatcaagatgagacaaggaaagtttctttagacgaagacgagagagagaaacctcaacgtgttttctctgatggggatttgggctttatcagcttggatgatgatgcggatgaagatgttacagctttagatgcgtcagatgatataccgctgatggaattggactcgggggatttaagtgcgcagactgataatcttgatgcactaatcaagccacttcggatcatgagaacagcaagagtttga
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| Protein seq | MDPPPPFDHPLHRRHYSDHHHFPPGGSGGSGGAASAAARSRYEYGGGGGGGYESHSHHQYHLPDHHHHHHHPPPRVQHHHHHHHQQLPAPTPPPPPPPPLPQHRLEPPPPHYGFPPRGHPDAYSPPPYHDPSPHHHYHRHGGDDFLPADEIRRVGGGHHHHHHHPQLQQLLPWEEAEEERRRYGGATQQLRLSPSGPRKRQRGAVHDADVESTSSSGPPPRRQRQQPHPDYALDDSFVDRNNAHPGYMVHEGFSIHSDSKVSRKIQMPTQMALPGSPHGTSAGYARRAPQKVAPSRVSVWHRIEENPAMYEPSSPPPHMPKEVHVSPCKSNNVAPASKELASVISVDCRGKSADGNDGDSNTGTKKNPVKKNEKVLASVLVKPPMEPKEKEVAAKKMLKKPDKVQKNAVHSNIRSLVSTPCPGAGAKKVKKIVIKKIVRKINGKGNQNSTPVVSEKRDGIDANACEKEEGEITTSSFEKDVISAHDPIAVSDTAGFGNAVNDQKQKNTNFTNPSGRNAASANGSMEIPDPPNGSGSAHPGKEEVLSPKNPVDNSNASLVDEPIEVLEKSGTEHPRKEHDMSSIGSGVNDAFADANNHTQKEVGEMNVAVAINSVRVSDAREVPRCDDSSMEESKVPKDVDANNAVCMDGVASNCDTTEVCGNEDARRECGKKLIGINDEKAFLLNNSARSSSTSDTCMTAVEGAQKKEGIILTGSSEKSIGFLGDSVGTHRTTEFGATCTSSGNEDIQVNEGRKPMELSEANAFSGSGDSQGKECRIPMGSSETNTSSVNHVNASNEKDFSLSEDTQKKESHRPIESCENTTFEIMHHEEAPSTEEVITGVSLGRKVAEGPTRSNERCSGARGNSATTLKFGLACATEDNQMEDLLNNRTALNETDDPLDAEDSPVFVPPSSRNVESTYASPLYDPMEDSTSDGILNIGLGRNTTSKAAELLDLHRDHISSENDSLIHSRGTSSVSGNREQSVPTALTLGSNIYFSSAETDDRPEERHELVVEGQQGLTVETTSKLDSPGKIEVLNGAGFISTDDIPVDNLNKLPSALESSDAMDADQVSSQVCVNPDHTNDSNTENAGVESNAKQDLLSSWIEAIVSEAKKEHPPCKSTPLTVGLPDKLLEPKDSDRKTLLETVVPSAVKSPQINFASSTLQKPLGLPPKLPPKKNDKAQNSYIRKGHDTQNKLNKPVVRRSMNFVRKADTKDLANSNISVERPKTPPLPLHTKSSCPTTLLEPLSQTLQKQHGHDAEKEDLTGQPKSGVDNSSIKSAQKSEPSDPKEKKDLMIACSISGIPGVKDRPQKALQTTNNVGRFSHVWTLNGQQPQRKGFMGSSHMNAFPRILPWKRKIFCKNFRSSHMSNVSSIRIVRKLLQTRKRDMIYTVSTDGFSLRKSGVLSVGGSSLKWSRSLEKRSQKVNKEATLALAEVERRKREKRKRQSLHDKGDHQFESVTGNQLRNSCQSSSDLRKPSTCNEYVRVSKGNQLVRNPKNVIRMLASDKVRWSLHTVRSRLAKKQQYCQFFTRFGECKKPRGKCPYIHDRAKVTICTKFLKGLCSNTSCKLTHKVLPERMPDCSYFLRGLCTNIACPYRHVKVNLNAPVCEDFLKGYCAYGDECHKKHSYVCPVFEATGECPQGSRCKLHHPKSKVKSKSRRPDFLQNSSWGRYFDASIDHQDETRKVSLDEDEREKPQRVFSDGDLGFISLDDDADEDVTALDASDDIPLMELDSGDLSAQTDNLDALIKPLRIMRTARV
More
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0638000 | RBH | 5.711864 | 4.354058 | 5.394697 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43120 | RBH | 4.167099 | 3.028533 | 1.380887 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0638000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023740 | RBH | 1.481911 | 13.881459 | 12.046420 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023550 | RBH | 1.001917 | 8.517812 | 6.737951 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023670 | RBH | 1.934150 | 11.411508 | 17.827347 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023280 | RBH | 0.304694 | 0.285344 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023740 | RBH | 11.967319 | 26.639915 | 18.469454 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0406900 | RBH | 4.861179 | 7.082905 | 17.6214185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023220 | RBH | 0.614034 | 0.692263 | 2.756691 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0388300 | RBH | 6.475897 | 25.425233 | 12.972493 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0005000 | RBH | 0.263115 | 0.408465 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023591 | RBH | 0.830983 | 7.907047 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023280 | RBH | 13.311797 | 44.369442 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0023940 | RBH | 1.384214 | 1.431579 | 2.243599 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023540 | RBH | 0.671529 | 11.076114 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023330 | RBH | 1.086728 | 7.922101 | 8.118323 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023540 | RBH | 2.421445 | 23.433359 | 8.828356 |
