Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKYG_06g0023591 | OGI:06073330 | 16/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr06:27013522-27013960 | ||||||||
| Gene Symbol | DCM1, OsDCM1, SAW1 | ||||||||||
| DNA seq | ATGCGTCAGATGATATACCGCTGATGGAATTGGACTCGGGGGATTTAAGTGCGCAGACTGATAATCTTGATGCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGAGTTTGATAGCTAATGCAGTTAGAGGGGATAACAGCAGGAGTTTGACAGGTTCTTTGATTGACCGAGACAGACCAAACTTGATACAACAGGATAGGTGCAGTGTTCGAGACAACCGTATATATATAGGGAAGGAAAACAAGTTTCGTTTTCTTCATTGTTTTTCTACCTTCTTCGGAAGTTCATTTTTGTTTGTCATGTACATATAGTTATTTTTCTTATGTTTTAGGTTACCTATATTACATGCCAAAATCACACAGAGTTAAGTGTAACGAACAATCATTTACATTGCAGAAGAAAGAAATGGCAATTTATTTAGAATTGCATTGTGC
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| CDS seq | ATGGAATTGGACTCGGGGGATTTAAGTGCGCAGACTGATAATCTTGATGCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGA |
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| Protein seq | MELDSGDLSAQTDNLDALIKPLRIMRTAR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKYG_06g0023591 | OsKYG_06g0023591.01 | Chr06 | 27013522 | 27013960 | + | IsoSeq | ||
| CDS seq | ATGGAATTGGACTCGGGGGATTTAAGTGCGCAGACTGATAATCTTGATGCACTAATCAAGCCACTTCGGATCATGAGAACAGCAAGA |
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| Protein seq | MELDSGDLSAQTDNLDALIKPLRIMRTAR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.830983 | 7.907047 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0638000 | RBH | 5.711864 | 4.354058 | 5.394697 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0638000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023550 | RBH | 1.001917 | 8.517812 | 6.737951 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0406900 | RBH | 4.861179 | 7.082905 | 17.6214185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023660 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
