Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0022580 | OGI:06070600 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:26299115-26302872 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtttgctcaagttatggcaggggaggtctctagcttcaatcagtctcctgagtatgatccagcaagagccacaggatctcctttgcatgaagatacaatttttggacggaagaatgagattgatgaactagtaagcatattggtgaaggattgtgatgaacatttgtcttatgattttcagtcatttaatacagtgttgcattctattgttggtgttgggggcatcggcaagactacactagcacaagctatttacaatgatgagcggattacagagatttttgatctgaagatatgggtttgtgtctcccataattttgacaaaactaggctaactaaggagatcatagcatgcacagctggcacagaacatattgaattggccagtttcaatttcagtatgctccaagaaaagcttcgagatagactggagtgcaaaaggtttcttctagtgctggatgatgtgtggtatgatgaaagagttggagagcacatgaacagagaaatgtggaaggagttgatagctcccataagaaatatacatataagttctgaggctttacagagaaagaggacaggaagcaaaatactagtgacaacccgtgcagaattggtagcaaaaatgctagattcaagaagcttatttttcttgcagggacttggaaaagatgacagcagaatgctcttccggaaatgtgcatttggaaacaggaatccagaagattacccagagttgaagataattgaggaccaaattgttgaaaacctaaaaggctcagatctagctattaaggtgactggaggccatttaagtggcaaatacaacactctggaatggaacaaaattcttcagaaaagtgtactcaaccctaatgacattgtgacaatcttacgctcaagttatgaaagcttaccaaatcatcttcagctgtgttttacgtactgcagtttattccctaaaggttaccgcattgatccaaacaggctgatccgtatgtgggtagctcagggttttgttcattcagacggaaatatcaatactagtctggaggatattggcagaggctatttcaatgatttgctacaacgctcatttttccaagtgttccgatgtggagaccaaatttactatattatgcatgatgtattgaatgatctggcacttcatgtttctgggggtgaatgccataggattgaacatggcagtctgagtgagttaccccatcatattaggcatttgtctgtttctgctgaactcctggaaaattttgtgagttttggtagtttgggaagattgcgttcactaatagtttttaacaagtttttgttttgctcaaaactcagcctgactcatgatatatttgccaagctgaagggggtgcgggtgctggatgtaagtggctgttgcatgaaacgcttgcctgatgctgtgtacaatctcattcacctccgtttcctagctatacagtggacatgttacacactacctaaaacaatttctagacttcatcatctaagggccttgtttgtacagtatcattcatgttattcctctggaaaatttagctcacattgttcctctcacaaacttttgaatctttcatgggggcaagtgaacatagctggaggttgtttcagtcttcctgaaagcattaacagactcggtaacttggtgcatgttgatatagagaagtcatatgctctcatgctaacgggcatgcatcaacttccatgtgttgaaggttcaggagaatttcatgttggcaagaaggggcaaagtattgttgggctgaaggatctgaatgaacttcgtggagagcttgcaattagattgctggagaatgtgaaaacaaaagaggaagctgctaaggccaatcttgacctaaagaagcacataagaaagctggagctagaatggggatcgggtgaccatgatggtcacactagcaatagttgtgatgtgcttaatgtgctaaagcctcaccctaatcttgtcgagctaactataagtggatatccaggtgctacttctcccacttggctgaattctggttggctgagtagtttgcaattgatttgcttacgtgattgtaaaagatgggaggtacttccacctttaggggatctaccattgcttaagtctcttgaagttcggagaatggatgaactgaaaatactaaatcaggagttgttgggccgtaaaggattcccctcattggagagactgctgctggaacgcttgcccaaactagaatggagtattgtagagaacgaccagttgtttcctgctctgagagatctctcaatttctgaatgcccaaggttaaaagaatacccgatctatctgcctacactcagacatattgctatactggatgaggaacaaattcacttcaaggtttttattgacaactttgaactaacaagatcattttgctgcctgttgtcaagcttcttccatgtcttgcgtgctcatcacctagagtttgttgaaaaactgaagatttgcgtagatcatttgagagacattcctaaggcagccttcaaaccgggatgtttttacccaggagcatgggtggcgatctagtctacggattgatagtcactaatatctatgtttcgtgatgggggtttagttttgtccTtttattggctgtgtgcattttatgcagaggccgggggtgggctcagttggattgtatcatcttgatgtatttgactgagtcttaataaagcttccattatcttaaaaaaaaaggcagccttcaataatatgaagcaactcaaagagctcacaatgtttgacttaggatcatcttgggagaatacatacccaataattagcacattgtgggatgaagatggagttactgtgcttcctacaacacttcaacgtcttgagctaagttgtcacctacaagtgagttctttatccaagttgctgaataacttcatatgccttgatatactagacctagcgaattgtgatacaatcggaatgccgtctcaattatcactaagtgtgcaccagttgaggatgctcaggcgattatatgtatacggctgtacctggttaatttcactcgagggatctgaatcatttgtctccctcaaagagctgacattggagaagtgtgattatttggaatgcataccagacatggagaacatgccatccctccaaaaattatttctaccgcgttgccctctagtgaagcgactatgtcaatctggctgccacacagcattgaaggaactgggcgtgagatactgtgatgggctagaaacactgaaagatttgcacgaccttgtttcccttagaaagatggagattagcgaatgctcggctctcatatcacttcctgatatgggcaccttttattctctaaagattctggtcattgatcgatgcactcaacttagggtattgccgaggagtggtctccttgtatcactggaagttatcttcctgatagaaggccatccattattagacaagcagtttgaacacaaaaatggtcctgactacaacaaggttgcagccctttcaggatgcatatgtcatacaaagcgatatttagagtatgaatgtaagtatactttctgttcactgttctgaatttattattggaaaattgaaacatataattcatctgttgtgaaaatgtcaaatttcttgttgatatagatggatttaattgtagtatgatgccatttcttgcaggggaactatatgagtactggaataaattctga
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| CDS seq | atgtttgctcaagttatggcaggggaggtctctagcttcaatcagtctcctgagtatgatccagcaagagccacaggatctcctttgcatgaagatacaatttttggacggaagaatgagattgatgaactatcatttaatacagtgttgcattctattgttggtgttgggggcatcggcaagactacactagcacaagctatttacaatgatgagcggattacagagatttttgatctgaagatatgggtttgtgtctcccataattttgacaaaactaggctaactaaggagatcatagcatgcacagctggcacagaacatattgaattggccagtttcaatttcagtatgctccaagaaaagcttcgagatagactggagtgcaaaaggtttcttctagtgctggatgatgtgtggtatgatgaaagagttggagagcacatgaacagagaaatgtggaaggagttgatagctcccataagaaatatacatataagttctgaggctttacagagaaagaggacaggaagcaaaatactagtgacaacccgtgcagaattggtagcaaaaatgctagattcaagaagcttatttttcttgcagggacttggaaaagatgacagcagaatgctcttccggaaatgtgcatttggaaacaggaatccagaagattacccagagttgaagataattgaggaccaaattgttgaaaacctaaaaggctcagatctagctattaaggtgactggaggccatttaagtggcaaatacaacactctggaatggaacaaaattcttcagaaaagtgtactcaaccctaatgacattgtgacaatcttacgctcaagttatgaaagcttaccaaatcatcttcagctgtgttttacgtactgcagtttattccctaaaggttaccgcattgatccaaacaggctgatccgtatgtgggtagctcagggttttgttcattcagacggaaatatcaatactagtctggaggatattggcagaggctatttcaatgatttgctacaacgctcatttttccaagtgttccgatgtggagaccaaatttactatattatgcatgatgtattgaatgatctggcacttcatgtttctgggggtgaatgccataggattgaacatggcagtctgagtgagttaccccatcatattaggcatttgtctgtttctgctgaactcctggaaaattttgtgagttttggtagtttgggaagattgcgttcactaatagtttttaacaagtttttgttttgctcaaaactcagcctgactcatgatatatttgccaagctgaagggggtgcgggtgctggattatcattcatgttattcctctggaaaatttagctcacattgttcctctcacaaacttttgaatctttcatgggggcaagtgaacatagctggaggttgtttcagtcttcctgaaagcattaacagactcggtaacttggtgcatgttgatatagagaagtcatatgctctcatgctaacgggcatgcatcaacttccatgtgttgaaggttcaggagaatttcatgttggcaagaaggggcaaagtattgttgggctgaaggatctgaatgaacttcgtggagagcttgcaattagattgctggagaatgtgaaaacaaaagaggaagctgctaaggccaatcttgacctaaagaagcacataagaaagctggagctagaatggggatcgggtgaccatgatggtcacactagcaatagttgtgatgtgcttaatgtgctaaagcctcaccctaatcttgtcgagctaactataagtggatatccaggtgctacttctcccacttggctgaattctggttggctgagtagtttgcaattgatttgcttacgtgattgtaaaagatgggaggtacttccacctttaggggatctaccattgcttaagtctcttgaagttcggagaatggatgaactgaaaatactaaatcaggagttgttgggccgtaaaggattcccctcattggagagactgctgctggaacgcttgcccaaactagaatggagtattgtagagaacgaccagttgtttcctgctctgagagatctctcaatttctgaatgcccaaggttaaaagaatacccgatctatctgcctacactcagacatattgctatactggatgaggaacaaattcacttcaagggatctgaatcatttgtctccctcaaagagctgacattggagaagtgtgattatttggaatgcataccagacatggagaacatgccatccctccaaaaattatttctaccgcgttgccctctagtgaagcgactatgtcaatctggctgccacacagcattgaaggaactgggcgtgagatactgtgatgggctagaaacactgaaagatttgcacgaccttgtttcccttagaaagatggagattagcgaatgctcggctctcatatcacttcctgatatgggcaccttttattctctaaagattctggtcattgatcgatgcactcaacttagggtattgccgaggagtggtctccttgtatcactggaagttatcttcctgatagaaggccatccattattagacaagcagtttgaacacaaaaatggtcctgactacaacaaggttgcagccctttcaggatgcatatgtcatacaaagcgatatttagagtatgaatgggaactatatgagtactggaataaattctga
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| Protein seq | MFAQVMAGEVSSFNQSPEYDPARATGSPLHEDTIFGRKNEIDELSFNTVLHSIVGVGGIGKTTLAQAIYNDERITEIFDLKIWVCVSHNFDKTRLTKEIIACTAGTEHIELASFNFSMLQEKLRDRLECKRFLLVLDDVWYDERVGEHMNREMWKELIAPIRNIHISSEALQRKRTGSKILVTTRAELVAKMLDSRSLFFLQGLGKDDSRMLFRKCAFGNRNPEDYPELKIIEDQIVENLKGSDLAIKVTGGHLSGKYNTLEWNKILQKSVLNPNDIVTILRSSYESLPNHLQLCFTYCSLFPKGYRIDPNRLIRMWVAQGFVHSDGNINTSLEDIGRGYFNDLLQRSFFQVFRCGDQIYYIMHDVLNDLALHVSGGECHRIEHGSLSELPHHIRHLSVSAELLENFVSFGSLGRLRSLIVFNKFLFCSKLSLTHDIFAKLKGVRVLDYHSCYSSGKFSSHCSSHKLLNLSWGQVNIAGGCFSLPESINRLGNLVHVDIEKSYALMLTGMHQLPCVEGSGEFHVGKKGQSIVGLKDLNELRGELAIRLLENVKTKEEAAKANLDLKKHIRKLELEWGSGDHDGHTSNSCDVLNVLKPHPNLVELTISGYPGATSPTWLNSGWLSSLQLICLRDCKRWEVLPPLGDLPLLKSLEVRRMDELKILNQELLGRKGFPSLERLLLERLPKLEWSIVENDQLFPALRDLSISECPRLKEYPIYLPTLRHIAILDEEQIHFKGSESFVSLKELTLEKCDYLECIPDMENMPSLQKLFLPRCPLVKRLCQSGCHTALKELGVRYCDGLETLKDLHDLVSLRKMEISECSALISLPDMGTFYSLKILVIDRCTQLRVLPRSGLLVSLEVIFLIEGHPLLDKQFEHKNGPDYNKVAALSGCICHTKRYLEYEWELYEYWNKF |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0022580 | OsLima_06g0022580.01 | Chr06 | 26299115 | 26302872 | + | NAM | ||
| CDS seq | atgtttgctcaagttatggcaggggaggtctctagcttcaatcagtctcctgagtatgatccagcaagagccacaggatctcctttgcatgaagatacaatttttggacggaagaatgagattgatgaactatcatttaatacagtgttgcattctattgttggtgttgggggcatcggcaagactacactagcacaagctatttacaatgatgagcggattacagagatttttgatctgaagatatgggtttgtgtctcccataattttgacaaaactaggctaactaaggagatcatagcatgcacagctggcacagaacatattgaattggccagtttcaatttcagtatgctccaagaaaagcttcgagatagactggagtgcaaaaggtttcttctagtgctggatgatgtgtggtatgatgaaagagttggagagcacatgaacagagaaatgtggaaggagttgatagctcccataagaaatatacatataagttctgaggctttacagagaaagaggacaggaagcaaaatactagtgacaacccgtgcagaattggtagcaaaaatgctagattcaagaagcttatttttcttgcagggacttggaaaagatgacagcagaatgctcttccggaaatgtgcatttggaaacaggaatccagaagattacccagagttgaagataattgaggaccaaattgttgaaaacctaaaaggctcagatctagctattaaggtgactggaggccatttaagtggcaaatacaacactctggaatggaacaaaattcttcagaaaagtgtactcaaccctaatgacattgtgacaatcttacgctcaagttatgaaagcttaccaaatcatcttcagctgtgttttacgtactgcagtttattccctaaaggttaccgcattgatccaaacaggctgatccgtatgtgggtagctcagggttttgttcattcagacggaaatatcaatactagtctggaggatattggcagaggctatttcaatgatttgctacaacgctcatttttccaagtgttccgatgtggagaccaaatttactatattatgcatgatgtattgaatgatctggcacttcatgtttctgggggtgaatgccataggattgaacatggcagtctgagtgagttaccccatcatattaggcatttgtctgtttctgctgaactcctggaaaattttgtgagttttggtagtttgggaagattgcgttcactaatagtttttaacaagtttttgttttgctcaaaactcagcctgactcatgatatatttgccaagctgaagggggtgcgggtgctggattatcattcatgttattcctctggaaaatttagctcacattgttcctctcacaaacttttgaatctttcatgggggcaagtgaacatagctggaggttgtttcagtcttcctgaaagcattaacagactcggtaacttggtgcatgttgatatagagaagtcatatgctctcatgctaacgggcatgcatcaacttccatgtgttgaaggttcaggagaatttcatgttggcaagaaggggcaaagtattgttgggctgaaggatctgaatgaacttcgtggagagcttgcaattagattgctggagaatgtgaaaacaaaagaggaagctgctaaggccaatcttgacctaaagaagcacataagaaagctggagctagaatggggatcgggtgaccatgatggtcacactagcaatagttgtgatgtgcttaatgtgctaaagcctcaccctaatcttgtcgagctaactataagtggatatccaggtgctacttctcccacttggctgaattctggttggctgagtagtttgcaattgatttgcttacgtgattgtaaaagatgggaggtacttccacctttaggggatctaccattgcttaagtctcttgaagttcggagaatggatgaactgaaaatactaaatcaggagttgttgggccgtaaaggattcccctcattggagagactgctgctggaacgcttgcccaaactagaatggagtattgtagagaacgaccagttgtttcctgctctgagagatctctcaatttctgaatgcccaaggttaaaagaatacccgatctatctgcctacactcagacatattgctatactggatgaggaacaaattcacttcaagggatctgaatcatttgtctccctcaaagagctgacattggagaagtgtgattatttggaatgcataccagacatggagaacatgccatccctccaaaaattatttctaccgcgttgccctctagtgaagcgactatgtcaatctggctgccacacagcattgaaggaactgggcgtgagatactgtgatgggctagaaacactgaaagatttgcacgaccttgtttcccttagaaagatggagattagcgaatgctcggctctcatatcacttcctgatatgggcaccttttattctctaaagattctggtcattgatcgatgcactcaacttagggtattgccgaggagtggtctccttgtatcactggaagttatcttcctgatagaaggccatccattattagacaagcagtttgaacacaaaaatggtcctgactacaacaaggttgcagccctttcaggatgcatatgtcatacaaagcgatatttagagtatgaatgggaactatatgagtactggaataaattctga
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| Protein seq | MFAQVMAGEVSSFNQSPEYDPARATGSPLHEDTIFGRKNEIDELSFNTVLHSIVGVGGIGKTTLAQAIYNDERITEIFDLKIWVCVSHNFDKTRLTKEIIACTAGTEHIELASFNFSMLQEKLRDRLECKRFLLVLDDVWYDERVGEHMNREMWKELIAPIRNIHISSEALQRKRTGSKILVTTRAELVAKMLDSRSLFFLQGLGKDDSRMLFRKCAFGNRNPEDYPELKIIEDQIVENLKGSDLAIKVTGGHLSGKYNTLEWNKILQKSVLNPNDIVTILRSSYESLPNHLQLCFTYCSLFPKGYRIDPNRLIRMWVAQGFVHSDGNINTSLEDIGRGYFNDLLQRSFFQVFRCGDQIYYIMHDVLNDLALHVSGGECHRIEHGSLSELPHHIRHLSVSAELLENFVSFGSLGRLRSLIVFNKFLFCSKLSLTHDIFAKLKGVRVLDYHSCYSSGKFSSHCSSHKLLNLSWGQVNIAGGCFSLPESINRLGNLVHVDIEKSYALMLTGMHQLPCVEGSGEFHVGKKGQSIVGLKDLNELRGELAIRLLENVKTKEEAAKANLDLKKHIRKLELEWGSGDHDGHTSNSCDVLNVLKPHPNLVELTISGYPGATSPTWLNSGWLSSLQLICLRDCKRWEVLPPLGDLPLLKSLEVRRMDELKILNQELLGRKGFPSLERLLLERLPKLEWSIVENDQLFPALRDLSISECPRLKEYPIYLPTLRHIAILDEEQIHFKGSESFVSLKELTLEKCDYLECIPDMENMPSLQKLFLPRCPLVKRLCQSGCHTALKELGVRYCDGLETLKDLHDLVSLRKMEISECSALISLPDMGTFYSLKILVIDRCTQLRVLPRSGLLVSLEVIFLIEGHPLLDKQFEHKNGPDYNKVAALSGCICHTKRYLEYEWELYEYWNKF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.365126 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0619000 | SBH | 0.568805 | 0.744070 | 1.235759 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g41660 | SBH | 0.465101 | 0.728113 | 0.534902 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0619000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022690 | RBH | 0.420917 | 13.032639 | 3.070864 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022540 | RBH | 0.236801 | 3.483112 | 1.967490 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022620 | SBH | 1.030157 | 5.872668 | 6.460638 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022290 | SBH | 0.038255 | 0.053408 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022660 | RBH | 0.0 | 0.0 | 0.412386 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0391800 | SBH | 0.7653995 | 0.9383945 | 2.9634885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022110 | RBH | 0.0 | 0.073041 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0372100 | RBH | 0.2219275 | 3.6331815 | 0.6311425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022660 | SBH | 0.037759 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022490 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022220 | SBH | 1.559182 | 5.764866 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022880 | RBH | 0.0 | 0.430981 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022480 | RBH | 0.0 | 0.832084 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022240 | SBH | 0.244803 | 0.498085 | 0.810879 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022440 | RBH | 0.0 | 2.400156 | 0.0 |
