Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0020870 | OGI:06063770 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:24512166-24515486 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcatccttgttaccctgcaactggcaggagagctcctcgccgtgttatcgccattgatctcccatccgaaggcatcataggctcaatatcaccttgtattgccaacatcacctctcttacaaggctgcaactatcaaacaatagcttccatggcggcataccgtctgagcttggcttcctgaacgaactccagaacctcgacctcagcatgaactctctggaaggtaacataccatcagaactctcttcttgttcacaacttcagatcctagatctgcagaacaattccctgcaaggtgagattccacctagtctaagtcaatgtgtgcatcttcaacaaattctccttggcaacaacaagctccaagggagcatcccctctgcttttggggaccttccaaaactgcgtgtacttttcctggctaacaacagactttcaggtgacataccaccctctttgggtagcagccttacactcacatacgttgatcttgggaacaatgctctcaccggagggatcccaaagcccatgttaaatagttcctctctccaacaactcattctcaatagaaatagtctcagtggagaactcccaaaggctctactcaacacattgtcacttatcggcatttacctcaaccagaatagctttatcggttctataccacctgttacaaccatctctccacaagttcaatatctcgatttaggagaaaatcatctcaccggaacaataccttcctctctggggaacctttcctccctacttcaacttcgactttcacagaattgtttagatgggagcataccagagagcttaggacatattccaacgctacagatgttgctgttgaatttgaacaatttctctgggacgattccaccacccctcttcaatatgtcatccctgacatttcttactgtggcaaataactcactcaccggaagattacctttagagatcggctatacactcccaaacattgaaggcttgattctattagcaaacaagtttaagggctcaattccaacctctcttctcaattcaacccatctacaaatgctttacctagctgacaacaagttaactgggatcatgccatcctttggatcactgacaaacttggaggaccttgatgtggcatacaacatgctagaagcaggcgactggggctttatctcgtcactttcaaattgcacaagattgactaagctgatgttggatgggaacaatcttcaaggaaacctgccaagttctgttggcaatctatctagtagtctccaacggttgtggctaagaaataataaaatttccggacctataccacaagagataggcaatcttaagagcctcactgagttgtacatggattacaatcaattgactggaaatatacctctaacaatcggaaatttgcacaaattaggcattctgtcctttgctcaaaacagactctctggtcaaatcccagacaacattgggaaacttgttcagctgaattatctaaatttggataggaacaacttgagtggaagcatacctctgagtatagggtattgtactcaactcgaaatactcaaccttgctcacaattcactaaatggaacaataccagagacaatctttaaaatttcttcactttcaatggtgttagacttgtcatacaattacttgtccggaagcatatcagatgaagtaggcaaccttgtcaatctgaataagcttatcatttcatacaacagattgtctggagatatcccatccactcttagtcaatgcgtggttctagagtatcttgagatgcaaagcaacttctttgtaggaagcattccgcaaacatttgtgaacatgttaggcatcaaggtgatggatatatctcataacaacttatcgggagaaattccacagtttctaacgttgttgcgttctttgcaagttctcaacttatcattcaataattttcatggagtggtgccaagcagtggtatttttgccaatgctagtgtggtgtcaattgaaggaaatgaccatctgtgcacagaaactccaacgacaggtatgcctctttgttcaaaattggttgacaagaaaaggaaccatagtaggtcattggttctagtcctaacgatagtaataccaattgttgctatcactttcactttattatgccttgcaaaaattatttgtatgaagagaatgcaagaagagccacatgtacaacagctgaatgagcacaggaacataacatatgaagatgttctaaaggccacaaatagattctcttcaactaacttacttggctcaggatcatttggaacagtttataagggcaatctgcattttcctttcaaagaaaagggcaatctgcatcttcaggaagaacatatcgccatcaagatttttaaccttgatatccatggatctaataagagctttgttgccgagtgtgaaaccctacaaaatgtccgccaccgaaatctcgtgaaaattattactctatgttcttctgtggattcaactggggcagacttcaaggctatagtgttcccatattttccaaatgggaatctagatatgtggttacatccaaaatcccatgaacatagtagtcaaacaaaggttctgactttaagacagagaattaatatcgccttggatgtagcatttgctttggattatcttcataaccagtgtgaattgccattagtacattgtgatttgaagccaagcaatattctgttggatagtgacatggttgcacacgtcagtgactttggcctagcaagatttgtatacacaagatcgaatgcacataaagatatatcaacaagcttggcttgtctaaaaggatctattggatatattccaccgggtgagataagctaatttgtaagttgttcattctatttatggtacacatggtgtctggtttctaattttatgatttctataaatctgaatgcagagtatggtatgaacgaagatatctcaaccaagggtgatgtctacagctttggaatccttctcttagaaatggtaacaggtagcagtcctaccgatgaaaattttaatggtggcacaaccctgcatgattttgttgatagagcattgcccgataatactcacgaggttgttgatcccacaatgctacaagatgatatcagtgtagccgatatgatggagaggtgtttcgttccattggttaaaataggactctcatgttcaatggcattgcctagagagcggccagaaatggggcaggtttctaccatgattcttagaatcaaacatgcagcctcaaacatgggtgtcagatga
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| CDS seq | atgcatccttgttaccctgcaactggcaggagagctcctcgccgtgttatcgccattgatctcccatccgaaggcatcataggctcaatatcaccttgtattgccaacatcacctctcttacaaggctgcaactatcaaacaatagcttccatggcggcataccgtctgagcttggcttcctgaacgaactccagaacctcgacctcagcatgaactctctggaaggtaacataccatcagaactctcttcttgttcacaacttcagatcctagatctgcagaacaattccctgcaaggtgagattccacctagtctaagtcaatgtgtgcatcttcaacaaattctccttggcaacaacaagctccaagggagcatcccctctgcttttggggaccttccaaaactgcgtgtacttttcctggctaacaacagactttcaggtgacataccaccctctttgggtagcagccttacactcacatacgttgatcttgggaacaatgctctcaccggagggatcccaaagcccatgttaaatagttcctctctccaacaactcattctcaatagaaatagtctcagtggagaactcccaaaggctctactcaacacattgtcacttatcggcatttacctcaaccagaatagctttatcggttctataccacctgttacaaccatctctccacaagttcaatatctcgatttaggagaaaatcatctcaccggaacaataccttcctctctggggaacctttcctccctacttcaacttcgactttcacagaattgtttagatgggagcataccagagagcttaggacatattccaacgctacagatgttgctgttgaatttgaacaatttctctgggacgattccaccacccctcttcaatatgtcatccctgacatttcttactgtggcaaataactcactcaccggaagattacctttagagatcggctatacactcccaaacattgaaggcttgattctattagcaaacaagtttaagggctcaattccaacctctcttctcaattcaacccatctacaaatgctttacctagctgacaacaagttaactgggatcatgccatcctttggatcactgacaaacttggaggaccttgatgtggcatacaacatgctagaagcaggcgactggggctttatctcgtcactttcaaattgcacaagattgactaagctgatgttggatgggaacaatcttcaaggaaacctgccaagttctgttggcaatctatctagtagtctccaacggttgtggctaagaaataataaaatttccggacctataccacaagagataggcaatcttaagagcctcactgagttgtacatggattacaatcaattgactggaaatatacctctaacaatcggaaatttgcacaaattaggcattctgtcctttgctcaaaacagactctctggtcaaatcccagacaacattgggaaacttgttcagctgaattatctaaatttggataggaacaacttgagtggaagcatacctctgagtatagggtattgtactcaactcgaaatactcaaccttgctcacaattcactaaatggaacaataccagagacaatctttaaaatttcttcactttcaatggtgttagacttgtcatacaattacttgtccggaagcatatcagatgaagtaggcaaccttgtcaatctgaataagcttatcatttcatacaacagattgtctggagatatcccatccactcttagtcaatgcgtggttctagagtatcttgagatgcaaagcaacttctttgtaggaagcattccgcaaacatttgtgaacatgttaggcatcaaggtgatggatatatctcataacaacttatcgggagaaattccacagtttctaacgttgttgcgttctttgcaagttctcaacttatcattcaataattttcatggagtggtgccaagcagtggtatttttgccaatgctagtgtggtgtcaattgaaggaaatgaccatctgtgcacagaaactccaacgacaggtatgcctctttgttcaaaattggttgacaagaaaaggaaccatagtaggtcattggttctagtcctaacgatagtaataccaattgttgctatcactttcactttattatgccttgcaaaaattatttgtatgaagagaatgcaagaagagccacatgtacaacagctgaatgagcacaggaacataacatatgaagatgttctaaaggccacaaatagattctcttcaactaacttacttggctcaggatcatttggaacagtttataagggcaatctgcattttcctttcaaagaaaagggcaatctgcatcttcaggaagaacatatcgccatcaagatttttaaccttgatatccatggatctaataagagctttgttgccgagtgtgaaaccctacaaaatgtccgccaccgaaatctcgtgaaaattattactctatgttcttctgtggattcaactggggcagacttcaaggctatagtgttcccatattttccaaatgggaatctagatatgtggttacatccaaaatcccatgaacatagtagtcaaacaaaggttctgactttaagacagagaattaatatcgccttggatgtagcatttgctttggattatcttcataaccagtgtgaattgccattagtacattgtgatttgaagccaagcaatattctgttggatagtgacatggttgcacacgtcagtgactttggcctagcaagatttgtatacacaagatcgaatgcacataaagatatatcaacaagcttggcttgtctaaaaggatctattggatatattccaccggagtatggtatgaacgaagatatctcaaccaagggtgatgtctacagctttggaatccttctcttagaaatggtaacaggtagcagtcctaccgatgaaaattttaatggtggcacaaccctgcatgattttgttgatagagcattgcccgataatactcacgaggttgttgatcccacaatgctacaagatgatatcagtgtagccgatatgatggagaggtgtttcgttccattggttaaaataggactctcatgttcaatggcattgcctagagagcggccagaaatggggcaggtttctaccatgattcttagaatcaaacatgcagcctcaaacatgggtgtcagatga
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| Protein seq | MHPCYPATGRRAPRRVIAIDLPSEGIIGSISPCIANITSLTRLQLSNNSFHGGIPSELGFLNELQNLDLSMNSLEGNIPSELSSCSQLQILDLQNNSLQGEIPPSLSQCVHLQQILLGNNKLQGSIPSAFGDLPKLRVLFLANNRLSGDIPPSLGSSLTLTYVDLGNNALTGGIPKPMLNSSSLQQLILNRNSLSGELPKALLNTLSLIGIYLNQNSFIGSIPPVTTISPQVQYLDLGENHLTGTIPSSLGNLSSLLQLRLSQNCLDGSIPESLGHIPTLQMLLLNLNNFSGTIPPPLFNMSSLTFLTVANNSLTGRLPLEIGYTLPNIEGLILLANKFKGSIPTSLLNSTHLQMLYLADNKLTGIMPSFGSLTNLEDLDVAYNMLEAGDWGFISSLSNCTRLTKLMLDGNNLQGNLPSSVGNLSSSLQRLWLRNNKISGPIPQEIGNLKSLTELYMDYNQLTGNIPLTIGNLHKLGILSFAQNRLSGQIPDNIGKLVQLNYLNLDRNNLSGSIPLSIGYCTQLEILNLAHNSLNGTIPETIFKISSLSMVLDLSYNYLSGSISDEVGNLVNLNKLIISYNRLSGDIPSTLSQCVVLEYLEMQSNFFVGSIPQTFVNMLGIKVMDISHNNLSGEIPQFLTLLRSLQVLNLSFNNFHGVVPSSGIFANASVVSIEGNDHLCTETPTTGMPLCSKLVDKKRNHSRSLVLVLTIVIPIVAITFTLLCLAKIICMKRMQEEPHVQQLNEHRNITYEDVLKATNRFSSTNLLGSGSFGTVYKGNLHFPFKEKGNLHLQEEHIAIKIFNLDIHGSNKSFVAECETLQNVRHRNLVKIITLCSSVDSTGADFKAIVFPYFPNGNLDMWLHPKSHEHSSQTKVLTLRQRINIALDVAFALDYLHNQCELPLVHCDLKPSNILLDSDMVAHVSDFGLARFVYTRSNAHKDISTSLACLKGSIGYIPPEYGMNEDISTKGDVYSFGILLLEMVTGSSPTDENFNGGTTLHDFVDRALPDNTHEVVDPTMLQDDISVADMMERCFVPLVKIGLSCSMALPRERPEMGQVSTMILRIKHAASNMGVR |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0020870 | OsLima_06g0020870.01 | Chr06 | 24512166 | 24515486 | + | NAM | ||
| CDS seq | atgcatccttgttaccctgcaactggcaggagagctcctcgccgtgttatcgccattgatctcccatccgaaggcatcataggctcaatatcaccttgtattgccaacatcacctctcttacaaggctgcaactatcaaacaatagcttccatggcggcataccgtctgagcttggcttcctgaacgaactccagaacctcgacctcagcatgaactctctggaaggtaacataccatcagaactctcttcttgttcacaacttcagatcctagatctgcagaacaattccctgcaaggtgagattccacctagtctaagtcaatgtgtgcatcttcaacaaattctccttggcaacaacaagctccaagggagcatcccctctgcttttggggaccttccaaaactgcgtgtacttttcctggctaacaacagactttcaggtgacataccaccctctttgggtagcagccttacactcacatacgttgatcttgggaacaatgctctcaccggagggatcccaaagcccatgttaaatagttcctctctccaacaactcattctcaatagaaatagtctcagtggagaactcccaaaggctctactcaacacattgtcacttatcggcatttacctcaaccagaatagctttatcggttctataccacctgttacaaccatctctccacaagttcaatatctcgatttaggagaaaatcatctcaccggaacaataccttcctctctggggaacctttcctccctacttcaacttcgactttcacagaattgtttagatgggagcataccagagagcttaggacatattccaacgctacagatgttgctgttgaatttgaacaatttctctgggacgattccaccacccctcttcaatatgtcatccctgacatttcttactgtggcaaataactcactcaccggaagattacctttagagatcggctatacactcccaaacattgaaggcttgattctattagcaaacaagtttaagggctcaattccaacctctcttctcaattcaacccatctacaaatgctttacctagctgacaacaagttaactgggatcatgccatcctttggatcactgacaaacttggaggaccttgatgtggcatacaacatgctagaagcaggcgactggggctttatctcgtcactttcaaattgcacaagattgactaagctgatgttggatgggaacaatcttcaaggaaacctgccaagttctgttggcaatctatctagtagtctccaacggttgtggctaagaaataataaaatttccggacctataccacaagagataggcaatcttaagagcctcactgagttgtacatggattacaatcaattgactggaaatatacctctaacaatcggaaatttgcacaaattaggcattctgtcctttgctcaaaacagactctctggtcaaatcccagacaacattgggaaacttgttcagctgaattatctaaatttggataggaacaacttgagtggaagcatacctctgagtatagggtattgtactcaactcgaaatactcaaccttgctcacaattcactaaatggaacaataccagagacaatctttaaaatttcttcactttcaatggtgttagacttgtcatacaattacttgtccggaagcatatcagatgaagtaggcaaccttgtcaatctgaataagcttatcatttcatacaacagattgtctggagatatcccatccactcttagtcaatgcgtggttctagagtatcttgagatgcaaagcaacttctttgtaggaagcattccgcaaacatttgtgaacatgttaggcatcaaggtgatggatatatctcataacaacttatcgggagaaattccacagtttctaacgttgttgcgttctttgcaagttctcaacttatcattcaataattttcatggagtggtgccaagcagtggtatttttgccaatgctagtgtggtgtcaattgaaggaaatgaccatctgtgcacagaaactccaacgacaggtatgcctctttgttcaaaattggttgacaagaaaaggaaccatagtaggtcattggttctagtcctaacgatagtaataccaattgttgctatcactttcactttattatgccttgcaaaaattatttgtatgaagagaatgcaagaagagccacatgtacaacagctgaatgagcacaggaacataacatatgaagatgttctaaaggccacaaatagattctcttcaactaacttacttggctcaggatcatttggaacagtttataagggcaatctgcattttcctttcaaagaaaagggcaatctgcatcttcaggaagaacatatcgccatcaagatttttaaccttgatatccatggatctaataagagctttgttgccgagtgtgaaaccctacaaaatgtccgccaccgaaatctcgtgaaaattattactctatgttcttctgtggattcaactggggcagacttcaaggctatagtgttcccatattttccaaatgggaatctagatatgtggttacatccaaaatcccatgaacatagtagtcaaacaaaggttctgactttaagacagagaattaatatcgccttggatgtagcatttgctttggattatcttcataaccagtgtgaattgccattagtacattgtgatttgaagccaagcaatattctgttggatagtgacatggttgcacacgtcagtgactttggcctagcaagatttgtatacacaagatcgaatgcacataaagatatatcaacaagcttggcttgtctaaaaggatctattggatatattccaccggagtatggtatgaacgaagatatctcaaccaagggtgatgtctacagctttggaatccttctcttagaaatggtaacaggtagcagtcctaccgatgaaaattttaatggtggcacaaccctgcatgattttgttgatagagcattgcccgataatactcacgaggttgttgatcccacaatgctacaagatgatatcagtgtagccgatatgatggagaggtgtttcgttccattggttaaaataggactctcatgttcaatggcattgcctagagagcggccagaaatggggcaggtttctaccatgattcttagaatcaaacatgcagcctcaaacatgggtgtcagatga
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| Protein seq | MHPCYPATGRRAPRRVIAIDLPSEGIIGSISPCIANITSLTRLQLSNNSFHGGIPSELGFLNELQNLDLSMNSLEGNIPSELSSCSQLQILDLQNNSLQGEIPPSLSQCVHLQQILLGNNKLQGSIPSAFGDLPKLRVLFLANNRLSGDIPPSLGSSLTLTYVDLGNNALTGGIPKPMLNSSSLQQLILNRNSLSGELPKALLNTLSLIGIYLNQNSFIGSIPPVTTISPQVQYLDLGENHLTGTIPSSLGNLSSLLQLRLSQNCLDGSIPESLGHIPTLQMLLLNLNNFSGTIPPPLFNMSSLTFLTVANNSLTGRLPLEIGYTLPNIEGLILLANKFKGSIPTSLLNSTHLQMLYLADNKLTGIMPSFGSLTNLEDLDVAYNMLEAGDWGFISSLSNCTRLTKLMLDGNNLQGNLPSSVGNLSSSLQRLWLRNNKISGPIPQEIGNLKSLTELYMDYNQLTGNIPLTIGNLHKLGILSFAQNRLSGQIPDNIGKLVQLNYLNLDRNNLSGSIPLSIGYCTQLEILNLAHNSLNGTIPETIFKISSLSMVLDLSYNYLSGSISDEVGNLVNLNKLIISYNRLSGDIPSTLSQCVVLEYLEMQSNFFVGSIPQTFVNMLGIKVMDISHNNLSGEIPQFLTLLRSLQVLNLSFNNFHGVVPSSGIFANASVVSIEGNDHLCTETPTTGMPLCSKLVDKKRNHSRSLVLVLTIVIPIVAITFTLLCLAKIICMKRMQEEPHVQQLNEHRNITYEDVLKATNRFSSTNLLGSGSFGTVYKGNLHFPFKEKGNLHLQEEHIAIKIFNLDIHGSNKSFVAECETLQNVRHRNLVKIITLCSSVDSTGADFKAIVFPYFPNGNLDMWLHPKSHEHSSQTKVLTLRQRINIALDVAFALDYLHNQCELPLVHCDLKPSNILLDSDMVAHVSDFGLARFVYTRSNAHKDISTSLACLKGSIGYIPPEYGMNEDISTKGDVYSFGILLLEMVTGSSPTDENFNGGTTLHDFVDRALPDNTHEVVDPTMLQDDISVADMMERCFVPLVKIGLSCSMALPRERPEMGQVSTMILRIKHAASNMGVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.017691 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0588800 | RBH | 0.208262 | 0.391048 | 1.527611 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38930 | RBH | 0.144921 | 0.270639 | 0.404640 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0588800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020780 | SBH | 0.134115 | 1.062366 | 0.983788 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020770 | RBH | 0.115735 | 0.948394 | 0.371496 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020730 | SBH | 0.119523 | 0.974873 | 2.135322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020590 | RBH | 0.038789 | 0.035139 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0021030 | RBH | 0.0 | 3.202118 | 2.678037 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0367200 | RBH | 0.9524215 | 2.2402625 | 1.868109 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020470 | RBH | 0.057466 | 0.049689 | 0.340183 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0344000 | RBH | 1.5736375 | 1.5182465 | 6.9441035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0005510 | SBH | 0.065846 | 0.017877 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020900 | RBH | 0.000000 | 1.769798 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020520 | RBH | 0.431263 | 2.521266 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021120 | RBH | 0.042714 | 0.133546 | 0.067458 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020740 | RBH | 0.0 | 0.843503 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020590 | RBH | 0.194280 | 0.0 | 0.547646 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020850 | RBH | 0.137123 | 3.362489 | 0.459822 |
