Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0020090 | OGI:06061270 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:23247532-23252495 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgccacgctgggggtggggaagggcagccaggctcggtaacgaccaaaatcgcggacagtgcacatgttgctgccgttgcgttgatgagacagtcggaagtgttgccagtagcgtccaccgagaggatgaactccttgacgatgggagacgaggcagtgaagttgtggtggaaaaggaggcccccggcgtcgacgtggaagcgggatgcggcgagggagggtgcgaaggggtagatgtggtgccgcagcggtggacggagaggtcgtaggacgcgtggcaagagaagacttcccgtccagagcagcagcggcattcgtgtactatcactttgtggaggcggaggatgtggtgccctcccccatcacaatgttactatcactttgtgaaatgaacaaatgaccaaaataaaaattgtagatataggtgagttctacaacttttatgttaatgacttcttcagctgaattcatctgatgtttcaaattgacgtttcaagttatcattttctaaattcaaatttgaaatgttcacaataaaaaaattgacaaaaataatacttaagtaagaacgcaacaacttgaatagaatgattttagaaaattttaggaaaaaaacatcacatttggagttagttctccaaatcgtcccgctaacccgcgcgagccaaaccagccccccgccactgattttgatggagaaagacagttttgcccctactagctatgtcgcggctcagcccaagtgagggcattttcgcacaaagccaaccggtgcgccacacatatatatacaaagctaaccctagaatcactccccgttcccaaatttcgcttcactctcgccagccagccaccactcccccctatccagacggtcgactccctccctccttcctgttgctgctccaacaagaaggaagatgcctccggggaggaagagggcaagaccatcaatggcggtagtcccaggtaccatcttggctattagtccttagggttacggggtacgctacgacggcgccgcgagcaccagggccggacggcggcgaagccggggtggggtccccagatgcgcggcgcgcggaggcgctgacgcgaggacgcggaggtgctgacgcgaggagacgggggctgcggcaatggagtgcgtctgttgtgttgcgttgtggttccggttccggccggtgatcgatctgctgtgtttcagtgccttcgtatacttatgtatagttatgtctccctcaatttcagaccatatactgtaattcttggaatcctggtagtttattaagtcatatcaaatgggcactgctactagtactatcacttttgattatttcattttcatttatctgccactaatttcaatgcaccaatgtatctgcagaaccactgttaactgacattgagaaggagagggctaagaatatcatgaggatcgatcagaggatgcaacagttgggtatcaaaagactatcagaaattgttaagcagtcatatgctaggaagaaaccaagtaaaaacaggaacaaaaatgaccagcttagtgaaagcactgaacttgaggtaccaactcttctactacacaacactagtaatatgcccgtgctaatgcaattctatttgtctttataactgaattaagcagtattttttttcagtcacatcaccttttttttcttacgagtggcaagaaaagactcccatattgaaacacagttgtagtgcacctcactcagttgtaaatatgagtaggttccaagaagttgagtagctattcttgagtaaagtaaattttattggagtaattcaatggacagagagcacaatcaatttcctggctgaccccttttttaagtgatatttgtatgtacctttgaagtggaaatttctcaatatcttatcgtgtcatgtctctgtttctttgtaaggctgtggcaccgtctgttgctgtaataggaacaccatctaagagggtcctggcacctaacaatttggaacaaacaaggtgcaccaggcagagtgtcatgagagaaaaagaagcagctgcgctaagactaattggagcaacagaggtgccaccaccagtactagattctacttctatccagaatgatgaagagatggacattacagtagaaggcaagtaccttcaactatttatttcaatgtcaatttatgtgatctgattcattcataatagtcacatgaatcttattattgacaacaaggtttttgaaatgtattatttaggcaccctaacggcaagtactcaagtggaccatcggggagcaagtatgggcatagaactggatagcataaccagaggtttagggactaggataccagttgttataaaggaagggaaaagaaggcccgaggcacctatgcaggctgcaaagttggcttctgagggtgggatcatagtcaggcagcatgtacccatacttacaagttggaaagaatacaagaaggacaaagtccaattcaaggaccaattggacaacttcattggcaaactatctgtaagacgttgtttgattagttcgatatatgctaatttcatcctttgcttttttaaatactaatgttatgctattcaatgtataggtaaacttaagcttgactggtgaaaaggagaatgatgtaacttcagcgtgtgctgacatgctaaagggtggaacacgccaaatgaggtataggctcaagcagaaatacttcgatggggtaccggcaaatcaagttaggactacatcaccatgttcgtctatgactgatgaacaatggagaaaattggtagacatgtggtcaaacccaaaacacaaggtatggtttatgtcaatattggttttctgtgagtccgctagttgcactcgagcactacatcctaatgtgtcttttaagctgatgaacttatgggctgtgaactcaattatgtaaactctgtaattgagatatgtgtgctggtgatgtgttttcaagctgctatgaatgtgctctgttgctttgcatagttcttggtccttcaggtttcctgctgcactgttccagtcaatttgctgtaatgtgatgctttgttccagtcaggttttcaactatcattttggttgctggaatatatttgtacagttttactatcatttttagcccgaactgcaatatcattggtttatttgtaggcctagtttcatattgacagcattgctccttaatttatttgtaggtgttaatctgcattggattgctcatatcagtaattagctcattcatccatgatttaacagtagtaagcattacattcaatgaaatgctcatatcagtaattagctcatatcatccatgatttgatagtactaaacattacatttaatgaactgtgcatgaccagattgctcatataataccatattgtttttactgtttccaatatttattgtattacttatgatatacacttgtgtcatgtctaggaaaaatgtgcaaagctcaaacagaaccgtgaaaatgttaagtttcaccagtgtactggatctcgatcttacattgcagcagcctacgtcgcggtaagaatataaaccggttgtatgacagcatgcatgtgttggaacacgttttatcttacgtgtgtatttaatctatgcattgctaatgtcattatatgtttgtgaacattccagaagcaagaaaaatacaaagatacagagcccactgcaattgatctattcaagttgacgcattgcagcaaaactaagggttttagtgatgatgccaagaaagctgcagtaagtatctctccttttttttatttagtacactacagcagacacaggatgtagagacggttttcttctcttgtagagacggttttgcccgtctctaggtgtactagagacggccagtgaaccgtctctgaggcgttgccattgctcccgtttcaagagacggttttgctagccgtgtctactaggtagagacggtccatagtgacggataaaccgtctctacatatattttccatattttgtagaaatattataataaacacactagatacggcttcagaccgtctctacagataaatttcttagatacagaaacaaacctcctcaattctggcatccacaattttatttggagaacatcaaactgcatcacactttagcattataaataaaaaaaatcagggagggacttgtcgaaaaatcacacatttcattcactcaatggtaatttacatcttacatgaaaaggtgaacttcaggaaaaaagaagtacaatttcagctacaatatcataaacaaatacataacttggacttctccatctaattgaagtatactctctattgctctagattgattgaactgttatttcgttaatcatcatcttcatgcacccgttaatcatcatcttcacacaagaacctgctatacaatgtaactttacaatgtgaaaaaaataaatagtgaaagtggactagagtagagattgtgaaggaaactactgataaaataaattgtgaaggaaacctgacaaatcattgtcttgctaggatgatatggaagccattttgagaagaccagtacatgaaggggagcaggaaatgacttgcacagatattgttgcccaagtgttgacaaagtcaagcacattccttcgtaatgtgggacttcaacagcctgttgccgctccaaaatctatttcaccgcagatgcaggagctacaagcacaattggaggctgagaaggaagaatctgcaggacttcgccaaaaggtccagaggttggaagcccaggcagaagaatctgaggcaaaagctcagaaacaagctgaggagattgagaacctaaagaaggcaataacagatactcagaagtcagcagcagatactcagaacctcattcgacagatgatagcatttggacagactcaggtcactcatcagaccactcctccttga
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| CDS seq | atggcgccacgctgggggtggggaagggcagccaggctcggtaacgaccaaaatcgcggacagtgcacatgttgctgccgttgcgttgatgagacagtcggaagtgttgccagtagcgtccaccgagaggatgaactccttgacgatgggagacgaggcagtgaagttgtggtggaaaaggaggcccccggcgtcgacgtggaagcgggatgcggcgagggagggtgcgaaggggatgatatggaagccattttgagaagaccagtacatgaaggggagcaggaaatgacttgcacagatattgttgcccaagtgttgacaaagtcaagcacattccttcgtaatgtgggacttcaacagcctgttgccgctccaaaatctatttcaccgcagatgcaggagctacaagcacaattggaggctgagaaggaagaatctgcaggacttcgccaaaaggtccagaggttggaagcccaggcagaagaatctgaggcaaaagctcagaaacaagctgaggagattgagaacctaaagaaggcaataacagatactcagaagtcagcagcagatactcagaacctcattcgacagatgatagcatttggacagactcaggtcactcatcagaccactcctccttga
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| Protein seq | MAPRWGWGRAARLGNDQNRGQCTCCCRCVDETVGSVASSVHREDELLDDGRRGSEVVVEKEAPGVDVEAGCGEGGCEGDDMEAILRRPVHEGEQEMTCTDIVAQVLTKSSTFLRNVGLQQPVAAPKSISPQMQELQAQLEAEKEESAGLRQKVQRLEAQAEESEAKAQKQAEEIENLKKAITDTQKSAADTQNLIRQMIAFGQTQVTHQTTPP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0020090 | OsLima_06g0020090.01 | Chr06 | 23247532 | 23252495 | + | NAM | ||
| CDS seq | atggcgccacgctgggggtggggaagggcagccaggctcggtaacgaccaaaatcgcggacagtgcacatgttgctgccgttgcgttgatgagacagtcggaagtgttgccagtagcgtccaccgagaggatgaactccttgacgatgggagacgaggcagtgaagttgtggtggaaaaggaggcccccggcgtcgacgtggaagcgggatgcggcgagggagggtgcgaaggggatgatatggaagccattttgagaagaccagtacatgaaggggagcaggaaatgacttgcacagatattgttgcccaagtgttgacaaagtcaagcacattccttcgtaatgtgggacttcaacagcctgttgccgctccaaaatctatttcaccgcagatgcaggagctacaagcacaattggaggctgagaaggaagaatctgcaggacttcgccaaaaggtccagaggttggaagcccaggcagaagaatctgaggcaaaagctcagaaacaagctgaggagattgagaacctaaagaaggcaataacagatactcagaagtcagcagcagatactcagaacctcattcgacagatgatagcatttggacagactcaggtcactcatcagaccactcctccttga
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| Protein seq | MAPRWGWGRAARLGNDQNRGQCTCCCRCVDETVGSVASSVHREDELLDDGRRGSEVVVEKEAPGVDVEAGCGEGGCEGDDMEAILRRPVHEGEQEMTCTDIVAQVLTKSSTFLRNVGLQQPVAAPKSISPQMQELQAQLEAEKEESAGLRQKVQRLEAQAEESEAKAQKQAEEIENLKKAITDTQKSAADTQNLIRQMIAFGQTQVTHQTTPP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10760 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006930 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019900 | RBH | 0.195884 | 3.205031 | 4.955662 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015410 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013100 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015730 | RBH | 18.832415 | 46.748371 | 48.010971 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0346500 | RBH | 23.863122 | 20.6979 | 10.955347 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006730 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0010110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010050 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010160 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0010200 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019870 | RBH | 1.214532 | 20.774544 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0002760 | SBH | 0.0 | 0.0 | 0.0 |
