Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0019900 | OGI:06061270 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:22523570-22529310 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgccacgctgggggtggggaagggcagccaggctcggtaacgaccaaaatcgcggacagtgcacatgttgctgccgttgtgttgatgagacagtcggaagtgttgccagtagcgtccaccgagaggatgaactccttgacgatgggagacgaggcagtgaagttgtggtggaaaaggaggcccccggcgtcgacgtggaagcgggatgcggcgagggagggtgcgaaggggtagatgtggtgccgcagcggtggacggagaggtcgtaggacgcgtggcaagagaagacttcccgtccagagcagcagcggcattcgtgtactatcactttgtggaggcggaggatgtggtgccctcccccatcacaatgttactatcactttgtgaaatgaacaaatgaccaaaataaaaattgtagatataggtgagttctacaacttttatgttaatgacttcttcagctgaattcatctgatgtttcaaattgacgtttcaagttatcattttctaaattcaaatttgaaatgttcacaataaaaaaattgacaaaaataatacttaagtaagaacgcaacaacttgaatagaatgattttagaaaattttaggaaaaaaacatcacatttggagttagttctccaaatcgtcccgctaacccgcgcgagccaaaccagccccccgccactgattttgatggagaaagacagttttgcccctactagctatgtcgcggctcagcccaagtgagggcattttcgcacaaagccaaccggtgcgccacacatatatatacaaagctaaccctagaatcactccccgttcccaaatttcgcttcactctcgccagccagccaccactcccccctatccagacggtcgactccctccctccttcctgttgctgctccaacaagaaggaagatgcctccggggaggaagagggcaagaccatcaatggcggtagtcccaggtaccatcttggctattagtccttagggttacggggtacgctacgacggcgccgcgagcaccagggccggacggcggcgaagccggggtggggtccccagatgcgcggcgcgcggaggcgctgacgcgaggacgcggaggtgctgacgcgaggagacgggggctgcggcaatggagtgcgtctgttgtgttgcgttgtggttccggttccggccggtgatcgatctgctgtgtttcagtgccttcgtatacttatgtatagttatgtctccctcaatttcagaccatatactgtaattcttggaatcctggtagtttattaagtcatatcaaatgggcactgctactagtactatcacttttgattatttcattttcatttatctgccactaatttcaatgcaccaatgtatctgcagaaccactgttaactgacattgagaaggagagggctaagaatatcatgaggatcgatcagaggatgcaacagttgggtatcaaaagactatcagaaattgttaagcagtcatatgctaggaagaaaccaagtaaaaacaggaacaaaaatgaccagcttagtgaaagcactgaacttgaggtaccaactcttctactacacaacactagtaatatgcccgtgctaatgcaattctatttgtctttataactgaattaagcagtattttttttcagtcacatcaccttttttttcttacgagtggcaagaaaagactcccatattgaaacacagttgtagtgcacctcactcagttgtaaatatgagtaggttccaagaagttgagtagctattcttgagtaaagtaaattttattggagtaattcaatggacagagagcacaatcaatttcctggctgaccccttttttaagtgatatttgtatgtacctttgaagtggaaatttctcaatatcttatcgtgtcatgtctctgtttctttgtaaggctgtggcaccgtctgttgctgtaataggaacaccatctaagagggtcctggcacctaacaatttggaacaaacaaggtgcaccaggcagagtgtcatgagagaaaaagaagcagctgcgctaagactaattggagcaacagaggtgccaccaccagtactagattctacttctatccagaatgatgaagagatggacattacagtagaaggcaagtaccttcaactatttatttcaatgtcaatttatgtgatctgattcattcataatagtcacatgaatcttattattgacaacaaggtttttgaaatgtattatttaggcaccctaacggcaagtactcaagtggaccatcggggagcaagtatgggcatagaactggatagcataaccagaggtttagggactaggataccagttgttataaaggaagggaaaagaaggcccgaggcacctatgcaggctgcaaagttggcttctgagggtgggatcatagtcaggcagcatgtacccatacttacaagttggaaagaatacaagaaggacaaagtccaattcaaggaccaattggacaacttcattggcaaactatctgtaagacgttgtttgattagttcgatatatgctaatttcatcctttgcttttttaaatactaatgttatgctattcaatgtataggtaaacttaagcttgactggtgaaaaggagaatgatgtaacttcagcgtgtgctgacatgctaaagggtggaacacgccaaatgaggtataggctcaagcagaaatacttcgatggggtaccggcaaatcaagttaggactacatcaccatgttcgtctatgactgatgaacaatggagaaaattggtagacatgtggtcaaacccaaaacacaaggtatggtttatgtcaatattggttttctgtgagtccgctagttgcactcgagcactacatcctaatgtgtcttttaagctgatgaacttatgggctgtgaactcaattatgtaaactctgtaattgagatatgtgtgctggtgatgtgttttcaagctgctatgaatgtgctctgttgctttgcatagttcttggtccttcaggtttcctgctgcactgttccagtcaatttgctgtaatgtgatgctttgttccagtcaggttttcaactatcattttggttgctggaatatatttgtacagttttactatcatttttagcccgaactgcaatatcattggtttatttgtaggcctagtttcatattgacagcattgctccttaatttatttgtaggtgttaatctgcattggattgctcatatcagtaattagctcattcatccatgatttaacagtagtaagcattacattcaatgaaatgctcatatcagtaattagctcatatcatccatgatttgatagtactaaacattacatttaatgaactgtgcatgaccagattgctcatataataccatattgtttttactgtttccaatatttattgtattacttatgatatacacttgtgtcatgtctaggaaaaatgtgcaaagctcaaacagaaccgtgaaaatgttaagtttcaccagtgtactggatctcgatcttacattgcagcagcctacgtcgcggtaagaatataaaccggttgtatgacagcatgcatgtgttggaacacgttttatcttacgtgtgtatttaatctatgcattgctaatgtcattatatgtttgtgaacattccagaagcaagaaaaatacaaagatacagagcccactgcaattgatctattcaagttgacgcattgcagcaaaactaagggttttagtgatgatgccaagaaagctgcagtaagtatctctccttttttttatttagtacactacagcagacacaggatgtagagacggttttcttctcttgtagagacggttttgcccgtctctaggtgtactagagacggccagtgaaccgtctctgaggcgttgccattgctcccgtttcaagagacggttttgctagccgtgtctactaggtagagacggtccatagtgacggataaaccgtctctacatatattttccatattttgtagaaatattataataaacacactagatacggcttcagaccgtctctacagataaatttcttagatacagaaacaaacctcctcaattctggcatccacaattttatttggagaacatcaaactgcatcacactttagcattataaataaaaaaaatcagggagggacttgtcgaaaaatcacacatttcattcactgaatggtaatttacatcttacatgaaaaggtgaacttcaggaaaaaagaagtacaatttcagctacaatatcataaacaaatacataacttggacttctccatctaattgaagtatactctctattgctccagattgattgaactgttatttcgttaatcatcatcttcatgcacccgttaatcatcatcttcacacaagaacctgctatacaatgtaactttacaatgtgaaaaaaataaatagtgaaagtggactagagtagagattgtgaaggaaactactgataaaataaattgtgaaggaaacctgacaaatcattgtcttgctaggatgatatggaagccattttgagaagaccagtacatgaaggggagcaggaaatgacttgcacagatattgttgcccaagtgttgacaaagtcaagcacattccttcgtaatgtgggacttcaacagcctgttgccgctccaaaatctatttcaccgcagatgcaggagctacaagcacaattggaggctgagaaggaagaatctgcaggacttcgccaaaaggtccagaggttggaagcccaggcagaagaatctgaggcaaaagctcagaaacaagctgaggagattgagaacctaaagaaggcaataacagatactcagaagtcagcagcagatactcagaacctcattcgacagatgatagcatttggacagactcaggtcactcatcagaccactcctccttgacttggttgcgcttaggtacacatcttcatcttatgatatgcctcttcttacataatgcagtttctttttcttgttcttggacctctcattttttttatactattagtagtattgtatgatatagttagatactggaatcaaatgaacataggtactgtttggaatcaatatatctactacaatgacttcctatagtgccaggactcatgaggctgaataaataaaaccactggtgaatataatttccaaaaggttgctgctcctagggactactagattgttgagcttgtgttcatttcttactagtgttaattcctgacacaatgttctttgcaggctgttggattcattttggtgatctgtgaatggagtttggtgtgactgtgactagagtatgacaccatgtgttttgcttttggcatgactggaccagagtgtggttgtttctgttagtgatctcgtgatgacaaaaacttgtgaatgctattgtttccatgactgaaactgtaagtggagtggttgctgcagttggtgaacatgcgatgattggaagttgccatctgctatttccttgactagaatgattttgatggatgtatgtttggtattactgattggtgacctggtgatctgttggacttgtaagactttggtggacgtattttgttgtgattcatttgtatggatggtgaatgtttagaactattgtatgtaggctgtatgaaccattaattttggaggaaatgatctgtttggatgtctaattatttttgttat
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| CDS seq | atggcgccacgctgggggtggggaagggcagccaggctcggtaacgaccaaaatcgcggacagtgcacatgttgctgccgttgtgttgatgagacagtcggaagtgttgccagtagcgtccaccgagaggatgaactccttgacgatgggagacgaggcagtgaagttgtggtggaaaaggaggcccccggcgtcgacgtggaagcgggatgcggcgagggaggccagccaccactcccccctatccagacggtcgactccctccctccttcctgttgctgctccaacaagaaggaagatgcctccggggaggaagagggcaagaccatcaatggcgaaccactgttaactgacattgagaaggagagggctaagaatatcatgaggatcgatcagaggatgcaacagttgggtatcaaaagactatcagaaattgttaagcagtcatatgctaggaagaaaccaagtaaaaacaggaacaaaaatgaccagcttagtgaaagcactgaacttgaggctgtggcaccgtctgttgctgtaataggaacaccatctaagagggtcctggcacctaacaatttggaacaaacaaggtgcaccaggcagagtgatgatatggaagccattttgagaagaccagtacatgaaggggagcaggaaatgacttgcacagatattgttgcccaagtgttgacaaagtcaagcacattccttcgtaatgtgggacttcaacagcctgttgccgctccaaaatctatttcaccgcagatgcaggagctacaagcacaattggaggctgagaaggaagaatctgcaggacttcgccaaaaggtccagaggttggaagcccaggcagaagaatctgaggcaaaagctcagaaacaagctgaggagattgagaacctaaagaaggcaataacagatactcagaagtcagcagcagatactcagaacctcattcgacagatgatagcatttggacagactcaggtcactcatcagaccactcctccttga
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| Protein seq | MAPRWGWGRAARLGNDQNRGQCTCCCRCVDETVGSVASSVHREDELLDDGRRGSEVVVEKEAPGVDVEAGCGEGGQPPLPPIQTVDSLPPSCCCSNKKEDASGEEEGKTINGEPLLTDIEKERAKNIMRIDQRMQQLGIKRLSEIVKQSYARKKPSKNRNKNDQLSESTELEAVAPSVAVIGTPSKRVLAPNNLEQTRCTRQSDDMEAILRRPVHEGEQEMTCTDIVAQVLTKSSTFLRNVGLQQPVAAPKSISPQMQELQAQLEAEKEESAGLRQKVQRLEAQAEESEAKAQKQAEEIENLKKAITDTQKSAADTQNLIRQMIAFGQTQVTHQTTPP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0019900 | OsKeNa_06g0019900.01 | Chr06 | 22523570 | 22528533 | + | NAM | ||
| CDS seq | atggcgccacgctgggggtggggaagggcagccaggctcggtaacgaccaaaatcgcggacagtgcacatgttgctgccgttgtgttgatgagacagtcggaagtgttgccagtagcgtccaccgagaggatgaactccttgacgatgggagacgaggcagtgaagttgtggtggaaaaggaggcccccggcgtcgacgtggaagcgggatgcggcgagggaggccagccaccactcccccctatccagacggtcgactccctccctccttcctgttgctgctccaacaagaaggaagatgcctccggggaggaagagggcaagaccatcaatggcgaaccactgttaactgacattgagaaggagagggctaagaatatcatgaggatcgatcagaggatgcaacagttgggtatcaaaagactatcagaaattgttaagcagtcatatgctaggaagaaaccaagtaaaaacaggaacaaaaatgaccagcttagtgaaagcactgaacttgaggctgtggcaccgtctgttgctgtaataggaacaccatctaagagggtcctggcacctaacaatttggaacaaacaaggtgcaccaggcagagtgatgatatggaagccattttgagaagaccagtacatgaaggggagcaggaaatgacttgcacagatattgttgcccaagtgttgacaaagtcaagcacattccttcgtaatgtgggacttcaacagcctgttgccgctccaaaatctatttcaccgcagatgcaggagctacaagcacaattggaggctgagaaggaagaatctgcaggacttcgccaaaaggtccagaggttggaagcccaggcagaagaatctgaggcaaaagctcagaaacaagctgaggagattgagaacctaaagaaggcaataacagatactcagaagtcagcagcagatactcagaacctcattcgacagatgatagcatttggacagactcaggtcactcatcagaccactcctccttga
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| Protein seq | MAPRWGWGRAARLGNDQNRGQCTCCCRCVDETVGSVASSVHREDELLDDGRRGSEVVVEKEAPGVDVEAGCGEGGQPPLPPIQTVDSLPPSCCCSNKKEDASGEEEGKTINGEPLLTDIEKERAKNIMRIDQRMQQLGIKRLSEIVKQSYARKKPSKNRNKNDQLSESTELEAVAPSVAVIGTPSKRVLAPNNLEQTRCTRQSDDMEAILRRPVHEGEQEMTCTDIVAQVLTKSSTFLRNVGLQQPVAAPKSISPQMQELQAQLEAEKEESAGLRQKVQRLEAQAEESEAKAQKQAEEIENLKKAITDTQKSAADTQNLIRQMIAFGQTQVTHQTTPP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0019900 | OsKeNa_06g0019900.02 | Chr06 | 22524389 | 22529310 | + | IsoSeq | ||
| CDS seq | atgtgggacttcaacagcctgttgccgctccaaaatctatttcaccgcagatgcaggagctacaagcacaattggaggctgagaaggaagaatctgcaggacttcgccaaaaggtccagaggttggaagcccaggcagaagaatctgaggcaaaagctcagaaacaagctgaggagattgaga |
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| Protein seq | MWDFNSLLPLQNLFHRRCRSYKHNWRLRRKNLQDFAKRSRGWKPRQKNLRQKLRNKLRRLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr06 | 22524532 | 22524961 | + | OsKeNa_06g0019900.02 | OsKeNa_06g0019900.02,OsKeNa_06g0019900.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.195884 | 3.205031 | 4.955662 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10760 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006930 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006900 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015410 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013100 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015730 | SBH | 18.832415 | 46.748371 | 48.010971 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0346400 | RBH | 7.4961455 | 9.794604 | 6.1294415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006730 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010050 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0010160 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0010200 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019870 | RBH | 1.214532 | 20.774544 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G009190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0015340 | SBH | 0.0 | 0.0 | 0.0 |
