Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0019830 | OGI:06007290 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:22956196-22960877 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaacaatttcctggatcttacatcatacgaccgtacatcagttctattacaaaaatgggtttcgcttttgcttacccaaaaataaaatatgacaggagattcgagtcaggtcctagaacaaattagggtcagctctagttgccataccatcctgccttggtgtaagcaaacaaagatatgataatgttctctccccaaccttcatatgtacatatgccctatggtcactcaagtgcaccagtgcgcctataatctctggaatgagcagatgttcaagggcttcaagcaagctgtaacaaatactccctccgtttcgaaatgtttgacaccgttgactttttagcacatgtttgaccattcgtcttattcaaaaacttttgtgagatatgtaaaattatatgcctacatagaaatatatttaacaatgaatcaaatgataggaaaagaattaataattacttaaattttttgaataagacgaacggtcaaacatgtgataaaaagtcaacggcgtcaaacatttcgaaacggagggagtacatgatttgcctgtctgtcagaatgttatcgtgcatttcaacctatgacctgcaaattgagaaaaaggtaagttaaggcttataatctgtggaatgttatggtgcaatttaacctatgacctgcaaatttccttttaaaaatgttggtaaggcatattccggtgactgtccatatttatagccattaaggttcaagatctgacctgattcaccaaggggagtgcataacgttcccattctgtcgaccattttgaagatgacccagtattcaaggcaccaaccttgagggatttcaactcatcgcattcttctggaaaccccttaaagagcatctgcatggatttgcgattgcaacaattaaccatataatttagtcacagcacttttaacaagtatttaaaaaaagaatataaaatatggaaataaataattaaaagtgatcatcaccataagttcatcggtgagctcagaagatgttgagaaaagaagtccattattatttacttttacaagctcgtcaatgctgcacattgcaccaaaaaaaaaagtgagcagagacttttaattcaaacaacataaaggtcaaaaccaaaacataacaaatcaaacatatgggaaacatggcttaccaggagaatgaagcagcacaaactggtaatccacatccaaacatatcaaccacctaaagcaaaatcatcttagttacaagcagcagattaaaaatatgcccatttttccaacagaacagatgcttacgagttataccttcataggtaggtctagccctgaagaggatgtatgtaatgatacacctagatcagccgatcctgtaattattcaaagaatcagcatttgtgctacaacatggaaatcttttggcagtcagctagtttaccaagcaaaagagggtagtcctctgatgcaagccacatggtccggaaggcaacacgcctcagtttcaacctctttatttgctcctcatacttcttcctatcaggtcctttaccttcagaattgatatttatggatatcaaaacaatattcaaaaactagttactggagctaataatggcatatctcaaactttgcaaaattataatggcatggttccaatttactcattagggtaatggagaaagccacaaaccagtgataatgaatagcagtcttgggtagacaaattgcttcccgttcttgatatcaatccaaagtttcccctcatccattgaatcatcttctcctaaagttgcagaaacgcgtctatcgtacataagtgctgcttccaaaagtatgctgaaatcttcatctggtgtcctggaatatatgtggcaaaggaaaagatttttaattttactttcattttaaccacatgtgcggagtatagaaaatgatacaactaggatcactcagatcaagagaacagaccagcttgtgctgctgacaacaagagctggtctattaggcttcaagaaaatttcaccatcgatccagcctgtaaatacagtagtgttcctgtcttccacttctttctctgtgttgtaagagaatacagtggaaactagaagctatatcaaaatgaaattcgcttgcagcaatgaaatatttagagtggttgagaacataccaacggagatgcaatcatcattgcccatagcactacaaatggaattccccaacctgctaaacaactatttcatgtcgaacggtcaaatagacagtatagtaaagatcaggaaagaaatgaaaacagatgctcacttcatgtttctctgtcaatgaagcaggatggaaaaattcaggagattgatcataaagaaccgttgcgctgaaatccgaccgattaagttagtacaaactgtagctagcaacctccaaaaaaaaagtactccctctgttccatattacaagacattttgggtttgtcccaagtcaaacttcttcaaatttgaccaactttatagtttataggaaaaatatagcagcatttctaacacaatacaaatatactataaaaatatattcaatagtggatttaatgaaactaatttggtgttgtagatgttgctacattttttctacaaacttggtcaaaactgaagtgagacttatgacaaacccaaaatgtcttgtgataaggaacggagagagtagtgtgctaacacaatagcctttaacatgaaaggtagctgaaaatttgatcttacttgattccccatttttgatcaagctcatgttattgcttttgtaacacagaaggcaccatcagccatccgtccaaaatgcttctcgaacctagaatggaaagaacacaccactgtattaacacaagcgatcagtatgctatatctagcagataaacaaacaggacaaggaattaccagaagtagattttaactatgatatggcttctgccatgagacaacccgagcagtgtatatccaaagttatgccaatccacaatagacttagcacctcttagcccgctagccagttttacagcagccaatgttggaacagagggtggattctgtcagacagaagatgagatgatcaaataaaagaaatcagttccattgcaattgtacgacgcgatcagtcacgtatgaggttttctaattaacaaataaattataagtatcatacagaaggatctataggttatataaatctatcagttaatacggcctacaaaacgatgagactttgactaagtacaggctgcacttatcgtagctgaaatgttgaattgaaaatggtgtcatgcagcatgacttgctaactaagctgggaaatactttgctaacaccatggttttactacaatgattgatgaatgatgaatcataaaagaattccacactactgaaagtgatagtgattgtagaaaaatacatattgtccatgtaattctgaaccatgcatgcaaaactgcaaataaagaagctcaatgcaattttgtgataactgacctgaacaatgaagacatcagggcgaggaatcttgaaacaaaggtaccaaatcaatatgataaactggatggcggctttaagtagcattgacagggcaccagatatctttgatattcctgttaactgcactgatttctagaaggtacaatttgtaagtactgatagtaggcaaaattagagaacagccaacagcataatgctttcgcacaatcagtaccatttcgtggatgtgaatcaatggattttctctcaataatagatgtgggtcacttcctgctcatttacccaaagcagaacataggtcaaatttcaacaacagaaggtcgaaagctgttggaaattcagcctgtctgtgtgccctatgtggtatagttaggtataaataacttcgagttacaaatggtggagtaaaatccaaaagtacaatggaactttgaaaagagcaatacctccatttgcaacaatgtccacttccataccaccctgtcaagaaaaataaagaacgactaataaactaaaacatagacatatgctggcacatagcataaagcatgttccaatttcccaaattttttgccactttaaggaaaaatgcttagtaaatgcaaggcaattttcttctattcacttcaaagtctgtcttatctaacaggattaatatttgcacgtgcaatcacactttcagggataaaaaagcacatttttaagggagcaaaaaactgacggcattaatcaaagcgaagctatgtcagctcacactttcaggggggcaaatgaccaccactacgttagttcatcggtgcactggcacaactgagacgtaccacatcttcttcctttccttgttattaccatgctatataacctaggaccaaaggcttctctagagcagtgatgaattaagtggaaaaatcatgaagtgatattagccatcaaagcacaattgaaatgcacccacagctagctggagggactaagctttcccaatcaaatccaaacaaaactaatatgagatgagatgacggatttggcgtggggaacaatacctggttggcgagggagagagagtggtactgcatgcgcgggctgcgcccaatgtctcctagaactaccaccgctgcgcgcctcctcctccctgcctccactgccgtggccattgccactggccttcgga
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| CDS seq | atggccacggcagtggaggcagggaggaggaggcgcgcagcggtggtagttctaggagacattgggcgcagcccgcgcatgcagtaccactctctctccctcgccaaccagggtggtatggaagtggacattgttgcaaatggaggaagtgacccacatctattattgagagaaaatccattgattcacatccacgaaatgaaatcagtgcagttaacaggaatatcaaagatatctggtgccctgtcaatgctacttaaagccgccatccagtttatcatattgatttggtacctttgtttcaagattcctcgccctgatgtcttcattgttcagaatccaccctctgttccaacattggctgctgtaaaactggctagcgggctaagaggtgctaagtctattgtggattggcataactttggatatacactgctcgggttgtctcatggcagaagccatatcatagttaaaatctacttctggttcgagaagcattttggacggatggctgatggtgccttctgtttgtttagcaggttggggaattccatttgtagtgctatgggcaatgatgattgcatctccgttgagaaagaagtggaagacaggaacactactgtatttacaggctggatcgatggtgaaattttcttgaagcctaatagaccagctcttgttgtcagcagcacaagctggacaccagatgaagatttcagcatacttttggaagcagcacttatgtacgatagacgcgtttctgcaactttaggagaagatgattcaatggatgaggggaaactttggattgatatcaagaacgggaagcaatttgtctacccaagactgctattcattatcactggtttgtggctttctccattaccc
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| Protein seq | MATAVEAGRRRRAAVVVLGDIGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHIHEMKSVQLTGISKISGALSMLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASGLRGAKSIVDWHNFGYTLLGLSHGRSHIIVKIYFWFEKHFGRMADGAFCLFSRLGNSICSAMGNDDCISVEKEVEDRNTTVFTGWIDGEIFLKPNRPALVVSSTSWTPDEDFSILLEAALMYDRRVSATLGEDDSMDEGKLWIDIKNGKQFVYPRLLFIITGLWLSPLP |
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| Function | UDP-glycosyltransferase TURAN [UniProtKB/Swiss-Prot:Q8L7M0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0019830 | OsLima_06g0019830.01 | Chr06 | 22956196 | 22960877 | - | NAM | ||
| CDS seq | atggccacggcagtggaggcagggaggaggaggcgcgcagcggtggtagttctaggagacattgggcgcagcccgcgcatgcagtaccactctctctccctcgccaaccagggtggtatggaagtggacattgttgcaaatggaggaagtgacccacatctattattgagagaaaatccattgattcacatccacgaaatgaaatcagtgcagttaacaggaatatcaaagatatctggtgccctgtcaatgctacttaaagccgccatccagtttatcatattgatttggtacctttgtttcaagattcctcgccctgatgtcttcattgttcagaatccaccctctgttccaacattggctgctgtaaaactggctagcgggctaagaggtgctaagtctattgtggattggcataactttggatatacactgctcgggttgtctcatggcagaagccatatcatagttaaaatctacttctggttcgagaagcattttggacggatggctgatggtgccttctgtttgtttagcaggttggggaattccatttgtagtgctatgggcaatgatgattgcatctccgttgagaaagaagtggaagacaggaacactactgtatttacaggctggatcgatggtgaaattttcttgaagcctaatagaccagctcttgttgtcagcagcacaagctggacaccagatgaagatttcagcatacttttggaagcagcacttatgtacgatagacgcgtttctgcaactttaggagaagatgattcaatggatgaggggaaactttggattgatatcaagaacgggaagcaatttgtctacccaagactgctattcattatcactggtttgtggctttctccattaccc
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| Protein seq | MATAVEAGRRRRAAVVVLGDIGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHIHEMKSVQLTGISKISGALSMLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASGLRGAKSIVDWHNFGYTLLGLSHGRSHIIVKIYFWFEKHFGRMADGAFCLFSRLGNSICSAMGNDDCISVEKEVEDRNTTVFTGWIDGEIFLKPNRPALVVSSTSWTPDEDFSILLEAALMYDRRVSATLGEDDSMDEGKLWIDIKNGKQFVYPRLLFIITGLWLSPLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0180700 | SBH | 0.901968 | 1.061391 | 3.119580 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g36890 | RBH | 0.423287 | 0.000000 | 0.380050 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0180700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019760 | RBH | 0.000000 | 0.0 | 1.125592 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019650 | RBH | 0.073033 | 0.0 | 0.180776 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019700 | RBH | 0.0 | 1.358599 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019470 | RBH | 0.038857 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019910 | RBH | 0.000000 | 2.104262 | 0.689065 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0342500 | RBH | 0 | 0.148915 | 0.1338 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019370 | RBH | 0.0 | 0.000000 | 0.050266 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0317000 | SBH | 4.2233925 | 2.004298 | 3.8527105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0001340 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019840 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019450 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020150 | RBH | 0.161473 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019620 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019520 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005770 | SBH | 1.061218 | 8.872674 | 3.872197 |
