Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0019200 | OGI:06058410 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:22138345-22139262 | ||||||||
| Gene Symbol | MAK7 | ||||||||||
| DNA seq | atggagaaaacgactgctaagtaattgtactccaatggatcgtttggttaagaagaaagataactctttaatatggcccacacacattttattttcatttccttattgtatgtcatttttcatcggtcgtgctattataatggcagattttcatcttaagttttctacagtagccatgtatctttctgttccaagggaaggcaggatgagggtccaagcaccatgaaatggaaaacatccttgctactattttcatctttgttttcttccttaccatagcagcaatttgtctaaacctacctgtcctttcctccttggattctcattaccagtggttttagttctgatttaaaaatgaatcatcattcccagctcttcatccttgtctttactctccttataaatttctcttgttccaggcttgccaatcctaccataagaccatttgcactgaatgttgagccaggcactgtatggcataacaacccatccctcctccacaacaaatatccagatgataatttcttgatgcgcatcatcatccctcgtgtcaccactgaaattccaagtattaattcgcctcttgatagccttccttcatttgcttgtgggttcttctgtgcaggacctgcaaccaactgcaatgcctacaccttttccatattctttgtcaatgccttcagcactggtggtgatgtgcatctggaatcccctgaggtagtctggtttgccaaccgtgatcgtccagttggagagaatgccactgttgaatttacagaacttggggatttagtgctctatgatgcagatgggacacttgtttggtccaccaataccacagacaagtctgttgtcagcatgaagcttacatggtcaggaaatctggtattgttagaccatgcagatgtggaggtctag
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| CDS seq | atggagaaaacgactgctaagcttgccaatcctaccataagaccatttgcactgaatgttgagccaggcactgtatggcataacaacccatccctcctccacaacaaatatccagatgataatttcttgatgcgcatcatcatccctcgtgtcaccactgaaattccaagtattaattcgcctcttgatagccttccttcatttgcttgtgggttcttctgtgcaggacctgcaaccaactgcaatgcctacaccttttccatattctttgtcaatgccttcagcactggtggtgatgtgcatctggaatcccctgaggtagtctggtttgccaaccgtgatcgtccagttggagagaatgccactgttgaatttacagaacttggggatttagtgctctatgatgcagatgggacacttgtttggtccaccaataccacagacaagtctgttgtcagcatgaagcttacatggtcaggaaatctggtattgttagaccatgcagatgtggaggtctag
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| Protein seq | MEKTTAKLANPTIRPFALNVEPGTVWHNNPSLLHNKYPDDNFLMRIIIPRVTTEIPSINSPLDSLPSFACGFFCAGPATNCNAYTFSIFFVNAFSTGGDVHLESPEVVWFANRDRPVGENATVEFTELGDLVLYDADGTLVWSTNTTDKSVVSMKLTWSGNLVLLDHADVEV |
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| Function | EP1-like glycoprotein 3 [UniProtKB/Swiss-Prot:Q9ZVA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0019200 | OsLima_06g0019200.01 | Chr06 | 22138345 | 22139262 | + | NAM | ||
| CDS seq | atggagaaaacgactgctaagcttgccaatcctaccataagaccatttgcactgaatgttgagccaggcactgtatggcataacaacccatccctcctccacaacaaatatccagatgataatttcttgatgcgcatcatcatccctcgtgtcaccactgaaattccaagtattaattcgcctcttgatagccttccttcatttgcttgtgggttcttctgtgcaggacctgcaaccaactgcaatgcctacaccttttccatattctttgtcaatgccttcagcactggtggtgatgtgcatctggaatcccctgaggtagtctggtttgccaaccgtgatcgtccagttggagagaatgccactgttgaatttacagaacttggggatttagtgctctatgatgcagatgggacacttgtttggtccaccaataccacagacaagtctgttgtcagcatgaagcttacatggtcaggaaatctggtattgttagaccatgcagatgtggaggtctag
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| Protein seq | MEKTTAKLANPTIRPFALNVEPGTVWHNNPSLLHNKYPDDNFLMRIIIPRVTTEIPSINSPLDSLPSFACGFFCAGPATNCNAYTFSIFFVNAFSTGGDVHLESPEVVWFANRDRPVGENATVEFTELGDLVLYDADGTLVWSTNTTDKSVVSMKLTWSGNLVLLDHADVEV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0551800 | RBH | 0.0 | 0.0 | 0.207122 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g35870 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0551800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019170 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019040 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019100 | RBH | 0.0 | 4.068362 | 1.208208 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018930 | SBH | 0.017122 | 0.014162 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019270 | RBH | 0.251341 | 1.065920 | 1.383085 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0331300 | SBH | 2.7055105 | 1.5466485 | 0.42264 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018760 | SBH | 0.181469 | 0.164169 | 0.162086 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0305700 | SBH | 1.3460305 | 1.257383 | 3.4774315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010210 | SBH | 0.177773 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018790 | RBH | 3.381542 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019530 | SBH | 0.101658 | 0.135645 | 0.137083 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018980 | RBH | 0.113295 | 1.239130 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018890 | RBH | 0.101742 | 0.0 | 0.087223 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019070 | SBH | 0.370876 | 3.379924 | 0.000000 |
