Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0018340 | OGI:06055110 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:21097867-21101045 | ||||||||
| Gene Symbol | GELP84, OsGELP84 | ||||||||||
| DNA seq | agttaggaaccatactggtttttaattagataagcagatgctacacacaaagaaactctgtatcatatgttaaccactttgtgcaatacacctttttttactcataccacctcacctgatgaatgaacaaaatcatgctttaatttcagacctctctatctcaacttttcttttttacctgatcgcaacgaatcgaaggagatatacatacaactatatggaaacaacctttctgatccaatttgctgtgctattctgataccctagaggtacgatggacaaaacaactaggagctcaagaattctgtacgattggttgatccccgaatgggccatgcaaccaacctcgcgcgatatgtccatatgcggcctctgtcaagtgaataccatcccagctccagtgtgtcttggggtcagcacatgcagtggcaccaggctcaccgcatttggcggtcagattgaaattgtaaggtcccgtcccaggagcaccacagcatgctctaggcaattgtttgtaaaatcctggatttagagcaaaaaagtcaggtaccaactccctgtatccgcttggacaagaaaaaaccataggtctatttcttggaataaatgcatatcctgcttatatgagcaaggatgtattccctccttatcaacatgaagtcaggacaaaatactatcactatcatgaatgtcatgaaaataaataataatttgatgaaatcagctcaagaaaataaaggacaaccatgctgctgttgccaataacacagagataataggaccatggacaaatatgtgcccatctattgatgtcccaaaacggtcagtataagattctccttccgacacagatatgtcaccaatatgtgcctcacttctctaatcattcagaatgcagtccaaaaaaatctttaagaatatcaggcccaccaagatgcaagcctttcttgagtagctagcagtatatgtaactttttctacaagaggggtaaaccactaaatccaagagatgagaagagccatgatatgaaaatactgctgggtcacaaactggtcagtcagctcagttagtgatggcctggtacttatagttcaagagattaagagcttcaggaagttttattcagaaatataaaaaaaggagtcagtaccagggtagaaatatattcgagagaagcatttgccatttctcaattcaagatggtgacttctaaatagtttaagttgaactatgaaaacactttacaggtccttacggttcttttgacaccaggttaaaattttctgttgcaaataatattgaggttaggattttgatgtagctcctagaaaagaccaactctggccataattttatatgtgttcaataacttaatcgctaaggtcaagatctgagctgcccaggttgtatgggcaaaataaacttttgatctcaaaagcaagactcatctgtggatgttgcccaagcttttgggagaacatggacaattaagaactgaaactgctagcaatatataatttcaaagtgccaaaacaataattaaaaaaaaaagcactacaagcaattgtgacatgtaaatttgagcagtgaataataccacttttggaagcagatcaggcccttcagagcatgatcaatcacagacaagacaccaaataatcaatacctagatctaagttttcaagctatagtttagcgcattgcacatctcaacagaacataagccggtaagtgtggctgttgataaactgatgttgaataaggtacttcagaagtgttaggccactaacaaagctaattctcagtcgtatcagtcattagactaaaaattccctcccacagtagaagccaatcaaatcaacaaattggtattacaacattcattgccttactacaacaaaacataagggaccgaggaactcaccaaacttttcgggctgaagcaagaattggacaaccggcgtgaaataatccccgtaaatgatcctcaccccaggatgcttggcacggagcttcgctagcgctcgcttgagcatcgaattgtgcacccatgagaacgtattgaaccgcttcaggcaaccgctacgcgaaccatacccctccttgggctctttgtacatggtcaagtacaccggaaagcaaccggatggcatcactccgggcacaatcaaatccctcgcgccctcggcaatcagttgctgcaatgtacatcagcaatcagagcaaagctccacacatcaagcactgtgaacaacagcaaagatgcaattgctacctcaacgccatcggatatgccctgaacgacatgaggcatcaaattgtaggcctccctgaggtccttccccgcgaagagcggcgcattgtagtcgttcccgccgaactcgccgacgacgaacagggacttggcgaagaaatccttgcaatctttggaaccaagagaagaggggggacaacatcaaagatcagaaatcaattactaacatccatagaacggaatgtggctagtcaaaagagaatcgtattcaccttgggtggagctgcagaaggagggcttgatgtcgcgcagccactggatttgggtgaagagggagccggagttccagaccgtcttgccgaggccgcgcctctcgaagaagtcggtgtcgagcgcggtggcgccggtgatggcgaagttggcgccccgcgcgaagctggcgttcttggccttggaagggggcagcagcggcaggccgaactcttgcgctggacgcgcgcggtggcaagaagaagaccgaatccgtcaaaatgctccgaggccaaggaggaggaatgcgggcggaaggaaaaagagaaggaagcgaatggttgataccgatgaagtcgacgacgaggcggccgtcggagcagcggccggtggggtagccgaagtaggtctggccgtagggcgggcgcgcggtggcgaggtagtccgggatgccgtccgtgaccaggttgccggcgtccaccagcgagtccccgaaattgaacaccgccctgtacttccccgcggcggacaccgcaagaacctgcagcgccgcagcaagaaccgccgccacccacgtgccggcgcctcctcgcctcctcggcctcgccatcgccgccgccgccgccgccgaagaagaagaagaagaagggtggtttgtgtgggcttcgttgccgt
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| CDS seq | atggcgaggccgaggaggcgaggaggcgccggcacgtgggtggcggcggttcttgctgcggcgctgcaggttcttgcggtgtccgccgcggggaagtacagggcggtgttcaatttcggggactcgctggtggacgccggcaacctggtcacggacggcatcccggactacctcgccaccgcgcgcccgccctacggccagacctacttcggctaccccaccggccgctgctccgacggccgcctcgtcgtcgacttcatcgcgcaagagttcggcctgccgctgctgcccccttccaaggccaagaacgccagcttcgcgcggggcgccaacttcgccatcaccggcgccaccgcgctcgacaccgacttcttcgagaggcgcggcctcggcaagacggtctggaactccggctccctcttcacccaaatccagtggctgcgcgacatcaagccctccttctgcagctccacccaagattgcaaggatttcttcgccaagtccctgttcgtcgtcggcgagttcggcgggaacgactacaatgcgccgctcttcgcggggaaggacctcagggaggcctacaatttgatgcctcatgtcgttcagggcatatccgatggcgttgagcaactgattgccgagggcgcgagggatttgattgtgcccggagtgatgccatccggttgctttccggtgtacttgaccatgtacaaagagcccaaggaggggtatggttcgcgtagcggttgcctgaagcggttcaatacgttctcatgggtgcacaattcgatgctcaagcgagcgctagcgaagctccgtgccaagcatcctggggtgaggatcatttacggggattatttcacgccggttgtccaattcttgcttcagcccgaaaagtttggattttacaaacaattgcctagagcatgctgtggtgctcctgggacgggaccttacaatttcaatctgaccgccaaatgcggtgagcctggtgccactgcatgtgctgaccccaagacacactggagctgggatggtattcacttgacagaggccgcatatggacatatcgcgcgaggtgaggtggtatga
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| Protein seq | MARPRRRGGAGTWVAAVLAAALQVLAVSAAGKYRAVFNFGDSLVDAGNLVTDGIPDYLATARPPYGQTYFGYPTGRCSDGRLVVDFIAQEFGLPLLPPSKAKNASFARGANFAITGATALDTDFFERRGLGKTVWNSGSLFTQIQWLRDIKPSFCSSTQDCKDFFAKSLFVVGEFGGNDYNAPLFAGKDLREAYNLMPHVVQGISDGVEQLIAEGARDLIVPGVMPSGCFPVYLTMYKEPKEGYGSRSGCLKRFNTFSWVHNSMLKRALAKLRAKHPGVRIIYGDYFTPVVQFLLQPEKFGFYKQLPRACCGAPGTGPYNFNLTAKCGEPGATACADPKTHWSWDGIHLTEAAYGHIARGEVV |
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| Function | GDSL esterase/lipase At5g45910 [UniProtKB/Swiss-Prot:Q9FJ45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0018340 | OsLima_06g0018340.01 | Chr06 | 21097968 | 21100990 | - | NAM | ||
| CDS seq | atggcgaggccgaggaggcgaggaggcgccggcacgtgggtggcggcggttcttgctgcggcgctgcaggttcttgcggtgtccgccgcggggaagtacagggcggtgttcaatttcggggactcgctggtggacgccggcaacctggtcacggacggcatcccggactacctcgccaccgcgcgcccgccctacggccagacctacttcggctaccccaccggccgctgctccgacggccgcctcgtcgtcgacttcatcgcgcaagagttcggcctgccgctgctgcccccttccaaggccaagaacgccagcttcgcgcggggcgccaacttcgccatcaccggcgccaccgcgctcgacaccgacttcttcgagaggcgcggcctcggcaagacggtctggaactccggctccctcttcacccaaatccagtggctgcgcgacatcaagccctccttctgcagctccacccaagattgcaaggatttcttcgccaagtccctgttcgtcgtcggcgagttcggcgggaacgactacaatgcgccgctcttcgcggggaaggacctcagggaggcctacaatttgatgcctcatgtcgttcagggcatatccgatggcgttgagcaactgattgccgagggcgcgagggatttgattgtgcccggagtgatgccatccggttgctttccggtgtacttgaccatgtacaaagagcccaaggaggggtatggttcgcgtagcggttgcctgaagcggttcaatacgttctcatgggtgcacaattcgatgctcaagcgagcgctagcgaagctccgtgccaagcatcctggggtgaggatcatttacggggattatttcacgccggttgtccaattcttgcttcagcccgaaaagtttggattttacaaacaattgcctagagcatgctgtggtgctcctgggacgggaccttacaatttcaatctgaccgccaaatgcggtgagcctggtgccactgcatgtgctgaccccaagacacactggagctgggatggtattcacttgacagaggccgcatatggacatatcgcgcgaggtgaggtggtatga
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| Protein seq | MARPRRRGGAGTWVAAVLAAALQVLAVSAAGKYRAVFNFGDSLVDAGNLVTDGIPDYLATARPPYGQTYFGYPTGRCSDGRLVVDFIAQEFGLPLLPPSKAKNASFARGANFAITGATALDTDFFERRGLGKTVWNSGSLFTQIQWLRDIKPSFCSSTQDCKDFFAKSLFVVGEFGGNDYNAPLFAGKDLREAYNLMPHVVQGISDGVEQLIAEGARDLIVPGVMPSGCFPVYLTMYKEPKEGYGSRSGCLKRFNTFSWVHNSMLKRALAKLRAKHPGVRIIYGDYFTPVVQFLLQPEKFGFYKQLPRACCGAPGTGPYNFNLTAKCGEPGATACADPKTHWSWDGIHLTEAAYGHIARGEVV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0018340 | OsLima_06g0018340.02 | Chr06 | 21097867 | 21101045 | - | IsoSeq | ||
| CDS seq | acggcaacgaagcccacacaaaccacccttcttcttcttcttcttcggcggcggcggcggcggcgatggcgaggccgaggaggcgaggaggcgccggcacgtgggtggcggcggttcttgctgcggcgctgcaggttcttgcggtgtccgccgcggggaagtacagggcggtgttcaatttcggggactcgctggtggacgccggcaacctggtcacggacggcatcccggactacctcgccaccgcgcgcccgccctacggccagacctacttcggctaccccaccggccgctgctccgacggccgcctcgtcgtcgacttcatcgcgcaagagttcggcctgccgctgctgcccccttccaaggccaagaacgccagcttcgcgcggggcgccaacttcgccatcaccggcgccaccgcgctcgacaccgacttcttcgagaggcgcggcctcggcaagacggtctggaactccggctccctcttcacccaaatccagtggctgcgcgacatcaagccctccttctgcagctccacccaagattgcaaggatttcttcgccaagtccctgttcgtcgtcggcgagttcggcgggaacgactacaatgcgccgctcttcgcggggaaggacctcagggaggcctaca
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| Protein seq | TATKPTQTTLLLLLLRRRRRRRWRGRGGEEAPARGWRRFLLRRCRFLRCPPRGSTGRCSISGTRWWTPATWSRTASRTTSPPRARPTARPTSATPPAAAPTAASSSTSSRKSSACRCCPLPRPRTPASRGAPTSPSPAPPRSTPTSSRGAASARRSGTPAPSSPKSSGCATSSPPSAAPPKIARISSPSPCSSSASSAGTTTMRRSSRGRTSGRPT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.055675 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0531600 | RBH | 0.750406 | 0.557784 | 1.830300 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34070 | RBH | 0.090319 | 0.293886 | 0.335841 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0531600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018290 | RBH | 0.266743 | 0.0 | 2.917266 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018120 | RBH | 0.343481 | 0.0 | 0.873884 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018220 | RBH | 1.512234 | 0.000000 | 2.248872 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018460 | RBH | 0.000000 | 3.771753 | 1.237153 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0311500 | RBH | 12.5256425 | 1.9341305 | 4.286389 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017940 | RBH | 0.264886 | 0.000000 | 0.469973 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0287300 | RBH | 12.503276 | 2.7707285 | 4.5106925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0011020 | RBH | 0.437600 | 0.623303 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017960 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018680 | RBH | 0.880099 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018120 | RBH | 1.135098 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018050 | RBH | 0.000000 | 0.0 | 0.629433 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018200 | RBH | 0.000000 | 0.000000 | 2.722752 |
