Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0014180 | OGI:06037480 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:13436755-13438573 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tactccttagataaaaccattgatctcaaacatacatgttcacaataaacaagtacaagttccaacaaaaagaatgcagaaaaacatacaacaatccatggctagacaatgccatgtgggattttattcttgctctagacgtagagtggtagagtcatttcgataggacaaccatcaagctgaacaagaggcgaaggaaattaggggagttgcacaaatggaatagcacacacataaaggtcctccttcctcctagcagtgaggcccatagtttccgtcatgtccaaatcgccggggagaacgtcttccggaagactccagtcaaaataaaacagaagacttgcgagagcaagctccatattagcaagtgcaaaattcattccagggcaaattcttcgcccagcaccaaacggtatgaactcgaagtggttgcctttgtgttctattgcactaccctcaaacctatctggcatgaacttctctggttcatcccaaatctcagcgtccctgcaaatagcccatatattcacgactacagtagctctcttgggtacgtcatagccgagtatttgacattgctcttggcattcccttggtagaacaaatggcccaggagtgtggagccgcagggtctccttgatgatacaatgtagatagggtaggttagttaggccctcctcagttaccttcattttctccttgtaggcttctctgacctcggcctgtgccctcgacatcacatctgggttcctcatcagctctgccatggcccattgcagcgtcgttattggcgcctcgctcccgcctgccaaaagttcctgtatatattgtttctctctgctagtcaaacaatcaatccgtagaagagaaaaaaaattaatgcaattcatgacatgaagatgttccttacaaaaatgattgctttgattatgctggtggtaagctcgaactccaggtttccttctgcttgtagccggaggaggacatcgatgaggtcctcctcgcggtctcctccctgacacgacctcttctcaaggtgctcgctgatgacgcgatccatgaactccatgacggactcgacgaacacctctgccctgtgcagagttgttgcgcacatcacgcgtggcAGcctccatgaggggaacaggtcggccatggtaaggctgctcgccagccgcacggcctcgtcgacgtagcggaccaaggtgtcgcgatccctgaaacactggcccatgatgatgtgcaccgtcgcgtccgtcatgtagttgctgaggagcttgctcagattcacaggtgcaggcggcgtcggcgtaggcgtcgatgatgaggcgatggccaggacgagccgcgccacctcctcctcccggatgctgcggaacttgaggatgcgcctggggctcagcagctcaaggctgcagatcttccgcacctgccgccagtgctcgccgtagggcacgaacgtcatccccgcgccatacctggtgcagaccttcagcacggtgctcagtggccgcgtggagaagttgtcgtcgtgcgtcctcatgatctctctagccgcaatggccgtggacgcgataaccaccggagacgcctggccaaagctgaggagcatgaGggggccatggaggcgagccaggtcgcgcagcgcgtggtgcgggagcgtgcggccgaacaggtggtggaggctgccgatgagcgggagccgccatggcccaggaggtagccgaaggtcgctctcgcgtgagccatggaagagcgtgaggaggcagtatacaagaggaagaagagctagcaaacagcAcagctcagcggtctccat
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| CDS seq | atggagaccgctgagctgTgctgtttgctagctcttcttcctcttgtatactgcctcctcacgctcttccatggctcacgcgagagcgaccttcggctacctcctgggccatggcggctcccgctcatcggcagcctccaccacctgttcggccgcacgctcccgcaccacgcgctgcgcgacctggctcgcctccatggccccCtcatgctcctcagctttggccaggcgtctccggtggttatcgcgtccacggccattgcggctagagagatcatgaggacgcacgacgacaacttctccacgcggccactgagcaccgtgctgaaggtctgcaccaggtatggcgcggggatgacgttcgtgccctacggcgagcactggcggcaggtgcggaagatctgcagccttgagctgctgagccccaggcgcatcctcaagttccgcagcatccgggaggaggaggtggcgcggctcgtcctggccatcgcctcatcatcgacgcctacgccgacgccgcctgcacctgtgaatctgagcaagctcctcagcaactacatgacggacgcgacggtgcacatcatcatgggccagtgtttcagggatcgcgacaccttggtccgctacgtcgacgaggccgtgcggctggcgagcagccttaccatggccgacctgttcccctcatggaggCTgccacgcgtgatgtgcgcaacaactctgcacagggcagaggtgttcgtcgagtccgtcatggagttcatggatcgcgtcatcagcgagcaccttgagaagaggtcgtgtcagggaggagaccgcgaggaggacctcatcgatgtcctcctccggctacaagcagaaggaaacctggagttcgagcttaccaccagcataatcaaagcaatcatttttgaacttttggcaggcgggagcgaggcgccaataacgacgctgcaatgggccatggcagagctgatgaggaacccagatgtgatgtcgagggcacaggccgaggtcagagaagcctacaaggagaaaatgaaggtaactgaggagggcctaactaacctaccctatctacattgtatcatcaaggagaccctgcggctccacactcctgggccatttgttctaccaagggaatgccaagagcaatgtcaaatactcggctatgacgtacccaagagagctactgtagtcgtgaatatatgggctatttgcagggacgctgagatttgggatgaaccagagaagttcatgccagataggtttgagggtagtgcaatagaacacaaaggcaaccacttcgagttcataccgtttggtgctgggcgaagaatttgccctggaatgaattttgcacttgctaatatggagcttgctctcgcaagtcttctgttttattttgactggagtcttccggaagacgttctccccggcgatttggacatgacggaaactatgggcctcactgctaggaggaaggaggacctttatgtgtgtgctattccatttgtgcaactcccctaa
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| Protein seq | METAELCCLLALLPLVYCLLTLFHGSRESDLRLPPGPWRLPLIGSLHHLFGRTLPHHALRDLARLHGPLMLLSFGQASPVVIASTAIAAREIMRTHDDNFSTRPLSTVLKVCTRYGAGMTFVPYGEHWRQVRKICSLELLSPRRILKFRSIREEEVARLVLAIASSSTPTPTPPAPVNLSKLLSNYMTDATVHIIMGQCFRDRDTLVRYVDEAVRLASSLTMADLFPSWRLPRVMCATTLHRAEVFVESVMEFMDRVISEHLEKRSCQGGDREEDLIDVLLRLQAEGNLEFELTTSIIKAIIFELLAGGSEAPITTLQWAMAELMRNPDVMSRAQAEVREAYKEKMKVTEEGLTNLPYLHCIIKETLRLHTPGPFVLPRECQEQCQILGYDVPKRATVVVNIWAICRDAEIWDEPEKFMPDRFEGSAIEHKGNHFEFIPFGAGRRICPGMNFALANMELALASLLFYFDWSLPEDVLPGDLDMTETMGLTARRKEDLYVCAIPFVQLP |
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| Function | Premnaspirodiene oxygenase [UniProtKB/Swiss-Prot:A6YIH8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0014180 | OsLima_06g0014180.01 | Chr06 | 13436755 | 13438573 | - | NAM | ||
| CDS seq | atggagaccgctgagctgTgctgtttgctagctcttcttcctcttgtatactgcctcctcacgctcttccatggctcacgcgagagcgaccttcggctacctcctgggccatggcggctcccgctcatcggcagcctccaccacctgttcggccgcacgctcccgcaccacgcgctgcgcgacctggctcgcctccatggccccCtcatgctcctcagctttggccaggcgtctccggtggttatcgcgtccacggccattgcggctagagagatcatgaggacgcacgacgacaacttctccacgcggccactgagcaccgtgctgaaggtctgcaccaggtatggcgcggggatgacgttcgtgccctacggcgagcactggcggcaggtgcggaagatctgcagccttgagctgctgagccccaggcgcatcctcaagttccgcagcatccgggaggaggaggtggcgcggctcgtcctggccatcgcctcatcatcgacgcctacgccgacgccgcctgcacctgtgaatctgagcaagctcctcagcaactacatgacggacgcgacggtgcacatcatcatgggccagtgtttcagggatcgcgacaccttggtccgctacgtcgacgaggccgtgcggctggcgagcagccttaccatggccgacctgttcccctcatggaggCTgccacgcgtgatgtgcgcaacaactctgcacagggcagaggtgttcgtcgagtccgtcatggagttcatggatcgcgtcatcagcgagcaccttgagaagaggtcgtgtcagggaggagaccgcgaggaggacctcatcgatgtcctcctccggctacaagcagaaggaaacctggagttcgagcttaccaccagcataatcaaagcaatcatttttgaacttttggcaggcgggagcgaggcgccaataacgacgctgcaatgggccatggcagagctgatgaggaacccagatgtgatgtcgagggcacaggccgaggtcagagaagcctacaaggagaaaatgaaggtaactgaggagggcctaactaacctaccctatctacattgtatcatcaaggagaccctgcggctccacactcctgggccatttgttctaccaagggaatgccaagagcaatgtcaaatactcggctatgacgtacccaagagagctactgtagtcgtgaatatatgggctatttgcagggacgctgagatttgggatgaaccagagaagttcatgccagataggtttgagggtagtgcaatagaacacaaaggcaaccacttcgagttcataccgtttggtgctgggcgaagaatttgccctggaatgaattttgcacttgctaatatggagcttgctctcgcaagtcttctgttttattttgactggagtcttccggaagacgttctccccggcgatttggacatgacggaaactatgggcctcactgctaggaggaaggaggacctttatgtgtgtgctattccatttgtgcaactcccctaa
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| Protein seq | METAELCCLLALLPLVYCLLTLFHGSRESDLRLPPGPWRLPLIGSLHHLFGRTLPHHALRDLARLHGPLMLLSFGQASPVVIASTAIAAREIMRTHDDNFSTRPLSTVLKVCTRYGAGMTFVPYGEHWRQVRKICSLELLSPRRILKFRSIREEEVARLVLAIASSSTPTPTPPAPVNLSKLLSNYMTDATVHIIMGQCFRDRDTLVRYVDEAVRLASSLTMADLFPSWRLPRVMCATTLHRAEVFVESVMEFMDRVISEHLEKRSCQGGDREEDLIDVLLRLQAEGNLEFELTTSIIKAIIFELLAGGSEAPITTLQWAMAELMRNPDVMSRAQAEVREAYKEKMKVTEEGLTNLPYLHCIIKETLRLHTPGPFVLPRECQEQCQILGYDVPKRATVVVNIWAICRDAEIWDEPEKFMPDRFEGSAIEHKGNHFEFIPFGAGRRICPGMNFALANMELALASLLFYFDWSLPEDVLPGDLDMTETMGLTARRKEDLYVCAIPFVQLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.045158 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0497350 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g30179 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0497350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0014150 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013960 | RBH | 0.0 | 0.0 | 3.768879 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0014110 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0014040 | RBH | 0.165037 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0014130 | RBH | 0.0 | 0.0 | 4.312023 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0217200 | RBH | 0.906202 | 0.0249335 | 0.6596135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013630 | RBH | 0.000000 | 0.0 | 0.909410 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0211800 | RBH | 2.418203 | 0.335067 | 0.6338055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0004040 | SBH | 0.0 | 0.037246 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0014080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0014400 | RBH | 0.000000 | 0.0 | 0.718286 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013920 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013790 | RBH | 0.000000 | 0.0 | 1.108802 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0014110 | RBH | 0.226093 | 0.0 | 2.896642 |
