Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0004040 | OGI:99012470 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg44:119994-121795 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacaaactaatcgcagctcagattgctcaatcatggacgcagctgtgttctgctgcttgctagctcttcttcctcttgtacactacctcatcacactcttcctccatggctcacgcgacagcgacctgcggctacctcctgggccatggcgcctcccgctcatcggcagcctccaccacctgttcttcggcgcgctcccgcaccgcgcgctgcgcgacctggcccgccgccacggccccctcatgctcctcgccttcggcgacgccccggtggtcgtcgtggcgtccacggccgccgcggcgagggagatcctgcggacgcacgacgacaacttctcgtcgcggccgctgagcgccgtggtgaaggcgtgcaccaggcgcggcgcaggcatcacgttcgcgccctacggcgagcactggcgtcaggtgcgcaagatctgccgcctcgagctgctgagccccaggcgcatcctggcgttccgcgccatccgcgaggaggaggcggcgcggctcgtccgggccatcggcgtcgcctcgccgccgctcgtgacgaacctgagccagctcctcggcaactacgtgacggacacgacggtgcacatcgtgatgggcgagcggttccgggagcgcgacgccctgctccggtacgtcgacgaggcggtgcggctggcgggcagcctcaccatggccgacctgttcccgtcgtcgaggctggcgcacgcgatgagcagcacgacgctgcgcagggcggaggcgttcgtcgagtccctcatggagttcatggaccgcgtcatcagggagcacctcgagaagaagaggtcgtgtcagggaggagaacgcgaggaggacctcatcgacgtcctcctccggctccaagcagaaggaagcctgcacttcgagctcaccatgggcataatcagagcagtcatttttgtaagctccttcatgctgctatcttcatgtcacgaattgtgttaattttttgtgatatatattttgtaccgaactaccgattgatcgtttgacaagttgagaaaaactatatatatatatatatatatatatatatatatatatatataggaccttttctcgggtgggagcgagacggcgacgacgacgctgcaatgggccatggcggagctgatgaggaaccctggggtgatgtccagagcgcaagctgaggtcagggaagcctacaaggacaaaatggaggtaaccgaggaaggcctaactaacctaacctatctacaatgtatcatcaaagagaccctacggctgcacactcccgggccattggctctaccaagggagtgccaggagcaatgccgaatactcggctatgacatacccaaaggagctacggtactcgtgaatgtgtgggctatttgcacagacaccgagttttgggatgagtcggagaagtttatgccagagaggtttgagggtagtacaatagaacacaaaggtaacaacttcgagttcataccattcggtgctgggcgaagaatatgccctgggatgcaatttgggattgctaatattgagctggctctcgcaaatcttttgtttcattttgactggactctcccggagggcacaatccatagtgatttggatatgacagaaacgatggggatcactgctaggaggaaggaagatctttatgtgcacgctactccatttgtacaactcccctaatcctagcattttgcatgtctttagcttgttggttctcctcgcactactgtacttcgactcttcaagaagaagaataaaaacacacatgtcatttttagtcct
More
|
||||||||||
| CDS seq | atggacgcagctgtgttctgctgcttgctagctcttcttcctcttgtacactacctcatcacactcttcctccatggctcacgcgacagcgacctgcggctacctcctgggccatggcgcctcccgctcatcggcagcctccaccacctgttcttcggcgcgctcccgcaccgcgcgctgcgcgacctggcccgccgccacggccccctcatgctcctcgccttcggcgacgccccggtggtcgtcgtggcgtccacggccgccgcggcgagggagatcctgcggacgcacgacgacaacttctcgtcgcggccgctgagcgccgtggtgaaggcgtgcaccaggcgcggcgcaggcatcacgttcgcgccctacggcgagcactggcgtcaggtgcgcaagatctgccgcctcgagctgctgagccccaggcgcatcctggcgttccgcgccatccgcgaggaggaggcggcgcggctcgtccgggccatcggcgtcgcctcgccgccgctcgtgacgaacctgagccagctcctcggcaactacgtgacggacacgacggtgcacatcgtgatgggcgagcggttccgggagcgcgacgccctgctccggtacgtcgacgaggcggtgcggctggcgggcagcctcaccatggccgacctgttcccgtcgtcgaggctggcgcacgcgatgagcagcacgacgctgcgcagggcggaggcgttcgtcgagtccctcatggagttcatggaccgcgtcatcagggagcacctcgagaagaagaggtcgtgtcagggaggagaacgcgaggaggacctcatcgacgtcctcctccggctccaagcagaaggaagcctgcacttcgagctcaccatgggcataatcagagcagtcatttttgaccttttctcgggtgggagcgagacggcgacgacgacgctgcaatgggccatggcggagctgatgaggaaccctggggtgatgtccagagcgcaagctgaggtcagggaagcctacaaggacaaaatggaggtaaccgaggaaggcctaactaacctaacctatctacaatgtatcatcaaagagaccctacggctgcacactcccgggccattggctctaccaagggagtgccaggagcaatgccgaatactcggctatgacatacccaaaggagctacggtactcgtgaatgtgtgggctatttgcacagacaccgagttttgggatgagtcggagaagtttatgccagagaggtttgagggtagtacaatagaacacaaaggtaacaacttcgagttcataccattcggtgctgggcgaagaatatgccctgggatgcaatttgggattgctaatattgagctggctctcgcaaatcttttgtttcattttgactggactctcccggagggcacaatccatagtgatttggatatgacagaaacgatggggatcactgctaggaggaaggaagatctttatgtgcacgctactccatttgtacaactcccctaa
More
|
||||||||||
| Protein seq | MDAAVFCCLLALLPLVHYLITLFLHGSRDSDLRLPPGPWRLPLIGSLHHLFFGALPHRALRDLARRHGPLMLLAFGDAPVVVVASTAAAAREILRTHDDNFSSRPLSAVVKACTRRGAGITFAPYGEHWRQVRKICRLELLSPRRILAFRAIREEEAARLVRAIGVASPPLVTNLSQLLGNYVTDTTVHIVMGERFRERDALLRYVDEAVRLAGSLTMADLFPSSRLAHAMSSTTLRRAEAFVESLMEFMDRVIREHLEKKRSCQGGEREEDLIDVLLRLQAEGSLHFELTMGIIRAVIFDLFSGGSETATTTLQWAMAELMRNPGVMSRAQAEVREAYKDKMEVTEEGLTNLTYLQCIIKETLRLHTPGPLALPRECQEQCRILGYDIPKGATVLVNVWAICTDTEFWDESEKFMPERFEGSTIEHKGNNFEFIPFGAGRRICPGMQFGIANIELALANLLFHFDWTLPEGTIHSDLDMTETMGITARRKEDLYVHATPFVQLP |
||||||||||
| Function | Dolabradiene monooxygenase [UniProtKB/Swiss-Prot:A0A1D6GQ67] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0004040 | OsLima_Ung0004040.01 | ChrUN-Ctg44 | 119994 | 121786 | + | NAM | ||
| CDS seq | atggacgcagctgtgttctgctgcttgctagctcttcttcctcttgtacactacctcatcacactcttcctccatggctcacgcgacagcgacctgcggctacctcctgggccatggcgcctcccgctcatcggcagcctccaccacctgttcttcggcgcgctcccgcaccgcgcgctgcgcgacctggcccgccgccacggccccctcatgctcctcgccttcggcgacgccccggtggtcgtcgtggcgtccacggccgccgcggcgagggagatcctgcggacgcacgacgacaacttctcgtcgcggccgctgagcgccgtggtgaaggcgtgcaccaggcgcggcgcaggcatcacgttcgcgccctacggcgagcactggcgtcaggtgcgcaagatctgccgcctcgagctgctgagccccaggcgcatcctggcgttccgcgccatccgcgaggaggaggcggcgcggctcgtccgggccatcggcgtcgcctcgccgccgctcgtgacgaacctgagccagctcctcggcaactacgtgacggacacgacggtgcacatcgtgatgggcgagcggttccgggagcgcgacgccctgctccggtacgtcgacgaggcggtgcggctggcgggcagcctcaccatggccgacctgttcccgtcgtcgaggctggcgcacgcgatgagcagcacgacgctgcgcagggcggaggcgttcgtcgagtccctcatggagttcatggaccgcgtcatcagggagcacctcgagaagaagaggtcgtgtcagggaggagaacgcgaggaggacctcatcgacgtcctcctccggctccaagcagaaggaagcctgcacttcgagctcaccatgggcataatcagagcagtcatttttgaccttttctcgggtgggagcgagacggcgacgacgacgctgcaatgggccatggcggagctgatgaggaaccctggggtgatgtccagagcgcaagctgaggtcagggaagcctacaaggacaaaatggaggtaaccgaggaaggcctaactaacctaacctatctacaatgtatcatcaaagagaccctacggctgcacactcccgggccattggctctaccaagggagtgccaggagcaatgccgaatactcggctatgacatacccaaaggagctacggtactcgtgaatgtgtgggctatttgcacagacaccgagttttgggatgagtcggagaagtttatgccagagaggtttgagggtagtacaatagaacacaaaggtaacaacttcgagttcataccattcggtgctgggcgaagaatatgccctgggatgcaatttgggattgctaatattgagctggctctcgcaaatcttttgtttcattttgactggactctcccggagggcacaatccatagtgatttggatatgacagaaacgatggggatcactgctaggaggaaggaagatctttatgtgcacgctactccatttgtacaactcccctaa
More
|
|||||||
| Protein seq | MDAAVFCCLLALLPLVHYLITLFLHGSRDSDLRLPPGPWRLPLIGSLHHLFFGALPHRALRDLARRHGPLMLLAFGDAPVVVVASTAAAAREILRTHDDNFSSRPLSAVVKACTRRGAGITFAPYGEHWRQVRKICRLELLSPRRILAFRAIREEEAARLVRAIGVASPPLVTNLSQLLGNYVTDTTVHIVMGERFRERDALLRYVDEAVRLAGSLTMADLFPSSRLAHAMSSTTLRRAEAFVESLMEFMDRVIREHLEKKRSCQGGEREEDLIDVLLRLQAEGSLHFELTMGIIRAVIFDLFSGGSETATTTLQWAMAELMRNPGVMSRAQAEVREAYKDKMEVTEEGLTNLTYLQCIIKETLRLHTPGPLALPRECQEQCRILGYDIPKGATVLVNVWAICTDTEFWDESEKFMPERFEGSTIEHKGNNFEFIPFGAGRRICPGMQFGIANIELALANLLFHFDWTLPEGTIHSDLDMTETMGITARRKEDLYVHATPFVQLP
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0004040 | OsLima_Ung0004040.02 | ChrUN-Ctg44 | 121598 | 121795 | + | IsoSeq | ||
| CDS seq | atgacagaaacgatggggatcactgctaggaggaaggaagatctttatgtgcacgctactccatttgtacaactc |
|||||||
| Protein seq | MTETMGITARRKEDLYVHATPFVQL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.037246 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0500700 | SBH | 0.0 | 0.0 | 0.362085 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g30500 | SBH | 0.0 | 0.0 | 0.093038 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0500700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013930 | SBH | 0.0 | 6.373126 | 0.766312 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0013740 | SBH | 0.078047 | 0.653345 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013880 | SBH | 0.000000 | 1.353652 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013840 | SBH | 0.0 | 0.035545 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013940 | SBH | 0.0 | 3.152551 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0214800 | SBH | 0.1009805 | 5.8419305 | 0.008046 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013440 | SBH | 0.0 | 0.389061 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0210100 | SBH | 0.1993325 | 3.4704305 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013880 | SBH | 0.0 | 4.596829 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013610 | SBH | 0.0 | 9.058791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0014220 | SBH | 0.0 | 1.234085 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0013740 | SBH | 0.0 | 0.843985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G013600 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013910 | SBH | 0.0 | 5.576813 | 0.0 |
