Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0008161 | OGI:08032140 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:6203550-6210295 | ||||||||
| Gene Symbol | DJA9, OsDjA9, DjA9 | ||||||||||
| DNA seq | tgaataagagcatgctcttctcatctgccatgcaaaattcaagatcaaacttgtacaacgtaacattcaatatgtgggccatttttggctgagtttttaggcctccatgaagacctactcctacatgacagcatgaatttacaagacaacactccacgcagcacgggcgtaggaaaaagtcactttctgctggttgtagctatcctccctattaagcacccaaattatatgctggtaaaaacaaaaaacacagcaaaaactaggaattgaaacctagcatccccattgttctcccattattggagcattacaaaataaaactccgtacagcttgtgattcgactgtaatgggaatcaaaattcaaactagtatgagtatctcttccaatggaacgagcaatcttctgccctgcgcctccaaaatcacggatccctgcagctgaataatcatgatgaccgatgtccaggttttaaatctccagagaatttatacgatgtgatgtcgccagatgttccttgtgaagcctagttcacagtcttggtcagtagcaggtgaaccagtacgaggaagccaagcccaagcaagaaagtttgccccttcatattttcaactagctcccacctgtaagtatcaaccagtagacagctgctggtaaagcctgtttgaaatttcatctttattactaccagacgatgcaagcagtaaataaaaacaacaaatattagcaatgaaagttcggtaggtcaggtgaatcgcttgcttgccaggtccaacaaactaaaaagaccagaataaagcaaacacattgatcgttacattttcttcaagtgaataaattgatcaatagatggacattaataaatcatgcatctttcaatgattgatcctgcgattaccattctattccaatataggttcacataatgatgtgagggttgcttaccagtttccagctgaaaaggaactctgttccttcgtggcttcctctactgcaaattcttctaacagggcacgttgacgttcattaaccattctgcagattaaattgtgttgatcagaaatcaaattgaagtgtgatgcactgtgtaaatctctttagatgaaattgcgaaagaccagtgtaaatccctttagatgaaccaaattgaatagaaaggtattgatgacttgagatttatccacaatggagcaaaagtaaggtcaaaaggtcatagaatattaaacgtcagctcagcgtaaatcaaaatgaagtatgagatgctgacgctgttatctgtaaaatttcatgcactgactagttgcccccatgtttgggattatcaacaacagcaggaacccagtacacctcttgggactatcttttctagagttcaggacctctaggcataccatatgagttccacgtgccaagtgccaaccagttagcctaaatgcttaaaaaagagatctgtgcgatccaatcataattcaacactatgtcctataaaaggtcaaacttaactcagagaccaagttcccctgaccagtttaacccatcctattagactggtccagctttaggttaccaaaaccagttctgcagaacatctacgggttattgcacccatagcatttttggtcctcttccttgtcatccttgtagccaacatttctttctatagttggtgcaaatttttgcatgctgtatgaagtgcagtccgaaagggactactgcacggtttacttcaaaaacaaatatgtgataagaggaaatggaatgccagcatatcaagtaacttgatcatagggtgcatccatatgttgcaaaacagaaacaggtaacacgaaaaggacaaacaacttacgagggaaaatgtattcgaaatcggacatgttggtccccaagatacccagcctggttgggcaatcctgacaatagtaatatatttagcactttgctaggaacacactctggtcttagatttaattaataattgcataatttacctttaccccttaaaactataacctgccctggttgaactcctttgggtatctgaaaaaaattcaccagatatcaactacgcaaaatacgaaaattcacacttcaaacacaccatctcatgaaatttatggtaacatggagacatgcttgatgcttccataaagtcaggccaagttaccgggcattataaatataaagggatacattctatgaaacattgcatggctaggtttgtaaatacaatatgtaatgaagaaagtccaactttggtcgctcaagacttcatgtcttaactttttccaaataggatgatgtggatgatatgtgctaactaatgatctgtttcgcaaaagaaaaacgaaaagtaatggcgcgaagccacataaacgcaatttgcaccagtttagcatttgaagggtgaaacttaaagatatagaagtttagggtgaaaatttaactctgatgagagttaagggacaaaagatggaccttttcctgtcgtatttgttatacaatatcaaggtctttatggaaaactacaatagttgtatttgttatacaactgtaaagttctagtatctaatccatcaattatgtcaaccggtataaccagcccccaaccaaaaataagccgtttatatccttctctctcatcatctctctctttatatatttatatctcaataaggagagattgtaacatctatgttccattttaggatttacagttggaacttcgagcccttaaattgaaggatggtgttttttatcctactagttctttatacgtgtgtacatgtatatagacaagattagcaaatagtcaaaattatataaaatgttactatgacagaagtgcctaatctttagtagtagtatatgaggattgctaatttgttaccttaacttctgctgtgccatctaaagtcggcacttcaacttttccaccaagcattgcctgtcatttttttcaaggaagaaaacaataagcaacaatatcatcacaattcacaatcaccattaattaatagcacaaattcgaagggcctccacagaggcacagatattcatcaagtgcagtttgatacaagagttttcaacagagaataatcacaataatagtgttccccaaatctaacaaactatcacatctgatttcaccacctctataggttcaccaagacagcatcgtcaacctctgaaggcttctacatctctcaagatagtatttatagtgaaaaatggagagtttttattgcctgaatggactagatttttcttgaattgtaattagaatgatgattcgcataacttgcagtctatattaggagggaagcaagctacgaagtacatatgttagcagtaggaaaatattcctgaaaagtagtgtatttcttacaaatgcttactctatattaaatattaataacagaaggaatatttgttactacctgtgtgaagctaatctttttgtctacatggatatcagcaccatcacgaacaaacactggatcacttgctacctatgatatacatagttgatggaagaatcagcagctgggttgcttgagaattgagataagctgaggctaatagcgtactgctcacacatggcacaagccagtacattgcatgtatttatactacatagatctaactaaccaggataaacggcaaaacaaactacttggagggtcatccggaataacagagaacatgaccatgactgaaagacaatgaaacaacatagagagacttatgaagtcccatggtgtcaaacttgcataaagatgaggaatcctatagtgcaacaagtggccattatattttggtcagagtcatagattctttaacgcacatatttggatgaaccaaaggatggaaactagtctgtcctaatacatatacatgcaaactaatccataacaagctacatagtgagagccaggaccccgtaatttgcagcaaaaatcatgaaaaccctgttaaggacttaaggtgcttacatagaaatgcaagactctctatacctatgaatcatctcagctaatgcatgatttcatgactttgctacaatatttatagaaaatattgttcttttccttcaacatagtaccgaacaaaaatggaatgagtaaaatctacaagcacaattgtttaaactgattaatatattattttcattctaaacttcaaatacgccaagacaaatcgaaatattgtaatcctcatgttttcctatcttccttatcctcattagcacctcagtactaagcaacaaacttttaacattgacaagtcaaataaggcttatgtcagcaataataaataactatgtgcaccaatatattcacagaacttgtaagttcataaaaaaaaaggtcaagcattcatgtaggtgttttctcacttgaagcttaatgtacaaacttccaggtagggttccacgtccaccactatgtccagcctctggtacatgaattgtatcgccagaatcaacccctatgttgagtgaaacaaggagtaattaacatgaaaacacaattcacagtctcaacttaagtttaattgtaagcaacatgtcatacctataaagagtttcaaaacaaccttagcaaactaggaagcaacatcctttttacaattgagaaaagaaaaaactagaaactagaatgacaacatagcagcccagatgccagatgttccttgaatgaacctgtcaacgcaaagagatggagcaatatatatgcaagctaacttagattttacatttttcacgagaatgcatgtgcaatatatgtggataaggcgcagtaatagagctaggttttggcatgtgttagcctgacgtgtgtctgtaatatagctacaatgactggtaaaagtcgtgttatgcatacccgcaaacctggggttttgtgaaatttatttgaagtttttttaagtggaatagaaaaaatgtaaatcattttgacaattgtagccgtttcagggaaaggagctggctaacaacgataatttaaggttagctgcacagcacctgctggaatggtcacatttacatatttcatgccatctaccacccctgaacctttgcatgtcaggcagtaatcctgtgaaaatagtcacaaatgagatagggtaaaaaaagaaaaatctgacatgttactcacagaacccttaccttaattactttcccaaagcctctgcaagaagtacaaatggatgtgaatgggttaatggaaacctgcacaaaccaccagtggatatgtttagaaagcatatccagcattcatgttagaaagggaaaattgaatataaaagcaaatacttactcttcctgcacctctacatgaagggcaaacatacatctttgcattggccaagtaccctctcccatctgacatcaaacaataccatgagagctttactcaaaaagaaaggacaatgcatggcaaatgagaactagtggactactgtatatattacagtatatgctagatcgggtcaaaaagaaagggcaatgcatgccaaatgagaactagtggacgaccgtacatatggcagtatatgctagatcagggcaatcaaccttaaagctttgtgtagtgtatttattcagcaagtcatcataaaaaacaagcatatattctcctgcatactctaaaaaaatcaagcatttaaagttatatatatatatatatatatatatattaaaaaaaaggtattgtctgctcaccttatttacgacactaggacatgatctagattcagttattgatttttagaaaagctttaattaaattttgcaaaagtacatggtagtagtttcataagcgatcatataaaatgctgacatatcctatactaccagtcatacccaataattattaactcagatacaactgacaccccagaacatgcttggcagtagttggagggagaaattacatgagcatcattgatggtaccatatttgtgatatcatgtggcatgataactgaaggaaaatctaatggaataggatttctcatttgcttaagctacagaaaacagctaatctaactaatggtaccgcttaaactagtgccttttccacaggactgaatgctcagacaaactatctagatagatgagatacatggacactaccagtcagtaagtttcttcgaggtttacagcaaaataacttatgcatcaagcatttattagaaacatgacttgcgacgatttgaaacttgcttgatagtacgtgcaatataaataagaaaaactgttacaggataaatgcacaccacatgagtcgcaaagattttttgcactgaaggagacttgcttcatgcatcctttaacagcatctctaaaggaaagattcacctctacctatgaaagtaaagccatgaaattagtttcaatgactaaaaaaaatgttacatagtaaaagaagcataagccttaggatgaacctcaatatcgttggcatgtgcatctacatcatgctcaaaaacctgaatacaaagagaagcgttgcactccattgtgagctatttaagtaaaaactggaaaaatatggaaggaaaaagagtcacctcggagaatattttgtaaaatttactggaaaaaggaccattgttttgtctgtagaattctgcaaagggattatgaccctgcttgtggaatcctgaaaatggatcttgataggccccatcaaaatccatcccactctttgaggaatttgtctcagaccctctataaaatagc
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| CDS seq | ctattttatagagggtctgagacaaattcctcaaagagtgggatggattttgatggggcctatcaagatccattttcaggattccacaagcagggtcataatccctttgcagaattctacagacaaaacaatggtcctttttccagtaaattttacaaaatattctccgaggtttttgagcatgatgtagatgcacatgccaacgatattgaggtagaggtgaatctttcctttagagatgctgttaaaggatgcatgaagcaagtctccttcagtgcaaaaaatctttgcgactcatgtgatgggagagggtacttggccaatgcaaagatgtatgtttgcccttcatgtagaggtgcaggaagagtttccattaacccattcacatccatttgtacttcttgcagaggctttgggaaagtaattaaggattactgcctgacatgcaaaggttcaggggtggtagatggcatgaaatatgtaaatgtgaccattccagcaggggttgattctggcgatacaattcatgtaccagaggctggacatagtggtggacgtggaaccctacctggaagtttgtacattaagcttcaagtagcaagtgatccagtgtttgttcgtgatggtgctgatatccatgtagacaaaaagattagcttcacacaggcaatgcttggtggaaaagttgaagtgccgactttagatggcacagcagaagttaagatacccaaaggagttcaaccagggcaggttatagttttaaggggtaaaggattgcccaaccaggctgggtatcttggggaccaacatgtccgatttcgaatacattttccctcaatggttaatgaacgtcaacgtgccctgttagaagaatttgcagtagaggaagccacgaaggaacagagttccttttcagctggaaactggtgggagctagttgaaaatatgaaggggcaaactttcttgcttgggcttggcttcctcgtactggttcacctgctactgaccaagactgtg
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| Protein seq | LFYRGSETNSSKSGMDFDGAYQDPFSGFHKQGHNPFAEFYRQNNGPFSSKFYKIFSEVFEHDVDAHANDIEVEVNLSFRDAVKGCMKQVSFSAKNLCDSCDGRGYLANAKMYVCPSCRGAGRVSINPFTSICTSCRGFGKVIKDYCLTCKGSGVVDGMKYVNVTIPAGVDSGDTIHVPEAGHSGGRGTLPGSLYIKLQVASDPVFVRDGADIHVDKKISFTQAMLGGKVEVPTLDGTAEVKIPKGVQPGQVIVLRGKGLPNQAGYLGDQHVRFRIHFPSMVNERQRALLEEFAVEEATKEQSSFSAGNWWELVENMKGQTFLLGLGFLVLVHLLLTKTV |
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| Function | Chaperone protein dnaJ 1, mitochondrial [UniProtKB/Swiss-Prot:Q38813] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0008161 | OsLima_06g0008161.01 | Chr06 | 6203550 | 6204074 | - | IsoSeq | ||
| CDS seq | atgctgtcatgtaggagtaggtcttcatggaggcctaaaaactcagccaaaaatggcccacatattgaatgttacgttgtacaa |
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| Protein seq | MLSCRSRSSWRPKNSAKNGPHIECYVVQ |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0008161 | OsLima_06g0008161.02 | Chr06 | 6203591 | 6210295 | - | IsoSeq | ||
| CDS seq | ctattttatagagggtctgagacaaattcctcaaagagtgggatggattttgatggggcctatcaagatccattttcaggattccacaagcagggtcataatccctttgcagaattctacagacaaaacaatggtcctttttccagtaaattttacaaaatattctccgaggtttttgagcatgatgtagatgcacatgccaacgatattgaggtagaggtgaatctttcctttagagatgctgttaaaggatgcatgaagcaagtctccttcagtgcaaaaaatctttgcgactcatgtgatgggagagggtacttggccaatgcaaagatgtatgtttgcccttcatgtagaggtgcaggaagagtttccattaacccattcacatccatttgtacttcttgcagaggctttgggaaagtaattaaggattactgcctgacatgcaaaggttcaggggtggtagatggcatgaaatatgtaaatgtgaccattccagcaggggttgattctggcgatacaattcatgtaccagaggctggacatagtggtggacgtggaaccctacctggaagtttgtacattaagcttcaagtagcaagtgatccagtgtttgttcgtgatggtgctgatatccatgtagacaaaaagattagcttcacacaggcaatgcttggtggaaaagttgaagtgccgactttagatggcacagcagaagttaagatacccaaaggagttcaaccagggcaggttatagttttaaggggtaaaggattgcccaaccaggctgggtatcttggggaccaacatgtccgatttcgaatacattttccctcaatggttaatgaacgtcaacgtgccctgttagaagaatttgcagtagaggaagccacgaaggaacagagttccttttcagctggaaactggtgggagctagttgaaaatatgaaggggcaaactttcttgcttgggcttggcttcctcgtactggttcacctgctactgaccaagactgtg
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| Protein seq | LFYRGSETNSSKSGMDFDGAYQDPFSGFHKQGHNPFAEFYRQNNGPFSSKFYKIFSEVFEHDVDAHANDIEVEVNLSFRDAVKGCMKQVSFSAKNLCDSCDGRGYLANAKMYVCPSCRGAGRVSINPFTSICTSCRGFGKVIKDYCLTCKGSGVVDGMKYVNVTIPAGVDSGDTIHVPEAGHSGGRGTLPGSLYIKLQVASDPVFVRDGADIHVDKKISFTQAMLGGKVEVPTLDGTAEVKIPKGVQPGQVIVLRGKGLPNQAGYLGDQHVRFRIHFPSMVNERQRALLEEFAVEEATKEQSSFSAGNWWELVENMKGQTFLLGLGFLVLVHLLLTKTV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.037098 | 0.693571 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0116800 | SBH | 4.066719 | 4.410540 | 10.257903 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11440 | SBH | 0.971606 | 0.353106 | 0.959780 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0116800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0008120 | RBH | 0.000000 | 2.604879 | 1.504563 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0007970 | RBH | 0.166292 | 0.000000 | 3.206186 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0007980 | SBH | 1.015708 | 2.337288 | 6.313999 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008100 | RBH | 0.031416 | 0.150295 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0007980 | RBH | 3.262800 | 3.625225 | 21.325451 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0100900 | RBH | 2.612574 | 5.7018735 | 16.3731495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0007710 | SBH | 0.000000 | 0.0 | 0.975003 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0101000 | RBH | 3.9056155 | 6.4601835 | 10.9357415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008170 | RBH | 0.103742 | 0.045261 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0007990 | RBH | 0.0 | 2.146698 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0008050 | SBH | 1.030531 | 9.165945 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0008120 | SBH | 0.197756 | 0.513714 | 0.198353 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0007900 | RBH | 0.105390 | 2.064028 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G007820 | RBH | 0.162527 | 1.718681 | 1.425442 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0008090 | RBH | 0.385336 | 0.000000 | 2.314565 |
