Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0006470 | OGI:06013240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:4753979-4757759 | ||||||||
| Gene Symbol | RLCK201, OsRLCK201 | ||||||||||
| DNA seq | tcaaacgtttgatcttctcggaggcatcggtgattcacccgtccttgagctgaacaccgatcttgggtattgtgaatcgcccatgaactcctgcaaatttagttgctttgttaagttgaaagatttgttcgatttgtttgagtagctgtgtgttcagtcgaatgttttttttaaaggttgtgttaaattgaagggtagttttatcatccttaagaaggtacctgtaggtatcatatttttaagtgtaaaatttgatacctctagatactaagtactctccccatcccataaaaatataatctagtattagatgtgatacatcatagtactatgaatttaaacatacctctatccagattcattgtaatagaatatgtcacatcatatccagattcgtttttttcttttggacggagggagtatctcggtataaaaaaaattagtgtaaaatttaggtacctcaaaatactttctcaagaatcttaaaattcctctgaattgaaagaatttaggggaggaagaaaggttagtccagttactgctgcttgtgagcgcgagggggtgctgaggagggacgagctgtacaagccgccgccaacgccgcctctgatggcgccgcagaactgcatgttgtcctcgccgagcgcgcgaagccggttgagctccgggagcacggcggagccgaggtcgggcctgtccttgcggcggagctcgcagcagcggagcgccatctcggcgaggcactgcgcctcctcgacgggccagtcggggacggccgggtcgagcatgtcggcgagcgcgccgcgctccatggcgcggccgacgtggtgggtgagccccatcggcggcttggccgtgatgatctggagcagcatcacgcccagcgagtacacgtccgacttgacgccgagcatccccgtctgctggtactccgggtcgatgtagcagaacgtccccgccgtcgacgtcatccggtactgcgtcacgttgtcggcgacgttcggcggcacgagccgcgccagcccgacgtcgctgatcttgctgacgtagttgcggtcgaggaggatgttgccgggcttgaggtcgcggtgcaccagcggctccggcttcgtctggtggaggaacaggaggcccgtggcgatctccgcggcgatgcggaaccggtgctgccacgggatcaccggcccgccgccgccgccgcgccggaacaggcagtcgtcgaggctgccgttcgccatgtactcgtacacgaggcagccgtactccgggcaggcgccgaggaggagcaccatgttcgggtggcggatgcagctgagcacctccacctcttgctggaactgcgacctcccctgcgccgcgtcggggcggagcaccttgatggcgaccgccgtgtggtcgaggtggcccttgtacaccgggccgtagccgccctcgccgatcttgcgcgcgtcgttgaaacgatcggtggcgtgctcgatctcctcgatgctgtagcggcggtagcggatctcgtgcgacatgccgccgccgccgccgccgcggttcttgcggtcctcggcctccttgaggagcttcttctccgcggtgatccgcttctgcacctcgagctcggcgatccgctgcgacgcctccgcggcgtccatggcggccttcgccttggccttctcccgctcgatcagcgccatcgccgactcctccgtcagcctcgcgtcgtgcgtcctctgctcctcctccgccttccaccgctgcagctccatcgccttctgcttcgcgttcagcgcctccttgcacgccgtgctgtacatgtccatggtctgcttcagctccagccgaagcctcttcatctccgtctccacgtcgtcctgcgcgcaagcaattcgtcgaacatgtcatgagcaatgatcgaggtggtggcaatggcgtgatcgagctcagctcaccatgccgatggagcagaaggaggaggtgctgctctgggagaaggaggtgtggtcgttgccgccgaaggagtctccgccccacggcgtgcgcgacgtctcgaagctgtggtcgtagctttcggccgaggcggcggacaggcgcgccgggacgggattgtgctcgacgctgcggcggccggagctgacgaacgagatgtcggcggagtccggcatggagaggtggctgaggtcggcgtacgacttgcgcgtggcaccgcccatcgggccgcgcgcgaacggcgagcggatgtagctgtccaccttgggcgtctccaggtggtcgtggcccctcgacgacgacgaccacttctgcggcgtgggcgccatcgccgtcgccggctcgggcttcgccgcggcggccgccatgttctggatctgcgaccggagcggcgacacgcgcggcgcctggcgggtggagttccgcaccgacgacaccttccccttgttgatgacgtacaccgtgcagaagtccggcgcgcccttggagatggtggtcgggatgtcggccttgaacctgaacccgcccctcgccgtggcgccgacgacgagcttctcgatggcggcgaccgcgcagaactcggtgatggacttggccacgtcgtggtcgtcgagcagcacgtccttgcactggatctgcacgcacgcacgcacacacccgcgagcgcgaagatggaaggatcagtgtggctgccgcatttgatcgaacaccttgaacgccacttacgtctttgcgcgtgcagaagcagcggaaagtgcggtagagatccctcatgtgcgggtccgtcggctgcttgaagccggaggcgtcctccactccacctgcaccatatcgacaggatcatagtacatcagtttcctgatttcctccaaagaaatgggaatttattaaggtccaaatacaaaggagaacactccaatcagggttcacaaatccagtagaatccggttcggaacttttcggatcgggtcgaaaacgcaaaccactcgattatttggtggagttataaaaaagcaaactgaattttaaatttttgataaaaattttatgtggacttcatcggttttggtaggtttatcaacagattatgtgaaatccaatgatactgctcatgagcagattttgatctaaagtcagaattttgaaccctggctttaatacggacgtccgaccaacagctaaagttcaacatttaaaacatttgatcaagtgagttatgaatattttttaaagaaaaacatatatcatgagccatgaaccaacatacactaaatagttatgatttttttttgaaaaaaagttatttcagtatgtaagttaaattcgacctatggtttggaaaaattgcaaattaggctctaaatagtcatattagtattttaaaactttgtatgcgtcaaatttaaactcatatgttcattatatatttttctgatggaattcgtgaagcgatatatcacgtatcgattcatcttgttaggtctttctgaaacaaatttgtgactatcttaatgtgataaaataagaaacgaggaatatctccaaaggagaaaaaaactttctcaattcttccttaaaactaattgtactacaaatatatatgtaagctatatatatatctaagtgacttgcctgaggtgcctttggtgttgacatggacgagcacgatgatctggcccttttggacaagtgtgtcgatggcccacttgagggcgttctggctgttcttgtccttgtcgatgcagacggcgacaagcgggtagctggaggtgtccaagtctttgccgtcatgatacctctccat
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| CDS seq | atggagaggtatcatgacggcaaagacttggacacctccagctacccgcttgtcgccgtctgcatcgacaaggacaagaacagccagaacgccctcaagtgggccatcgacacacttgtccaaaagggccagatcatcgtgctcgtccatgacgcctccggcttcaagcagccgacggacccgcacatgagggatctctaccgcactttccgctgcttctgcacgcgcaaagacatccagtgcaaggacgtgctgctcgacgaccacgacgtggccaagtccatcaccgagttctgcgcggtcgccgccatcgagaagctcgtcgtcggcgccacggcgaggggcgggttcaggttcaaggccgacatcccgaccaccatctccaagggcgcgccggacttctgcacggtgtacgtcatcaacaaggggaaggtgtcgtcggtgcggaactccacccgccaggcgccgcgcgtgtcgccgctccggtcgcagatccagaacatggcggccgccgcggcgaagcccgagccggcgacggcgatggcgcccacgccgcagaagtggtcgtcgtcgtcgaggggccacgaccacctggagacgcccaaggtggacagctacatccgctcgccgttcgcgcgcggcccgatgggcggtgccacgcgcaagtcgtacgccgacctcagccacctctccatgccggactccgccgacatctcgttcgtcagctccggccgccgcagcgtcgagcacaatcccgtcccggcgcgcctgtccgccgcctcggccgaaagctacgaccacagcttcgagacgtcgcgcacgccgtggggcggagactccttcggcggcaacgaccacacctccttctcccagagcagcacctcctccttctgctccatcggcatggacgacgtggagacggagatgaagaggcttcggctggagctgaagcagaccatggacatgtacagcacggcgtgcaaggaggcgctgaacgcgaagcagaaggcgatggagctgcagcggtggaaggcggaggaggagcagaggacgcacgacgcgaggctgacggaggagtcggcgatggcgctgatcgagcgggagaaggccaaggcgaaggccgccatggacgccgcggaggcgtcgcagcggatcgccgagctcgaggtgcagaagcggatcaccgcggagaagaagctcctcaaggaggccgaggaccgcaagaaccgcggcggcggcggcggcggcatgtcgcacgagatccgctaccgccgctacagcatcgaggagatcgagcacgccaccgatcgtttcaacgacgcgcgcaagatcggcgagggcggctacggcccggtgtacaagggccacctcgaccacacggcggtcgccatcaaggtgctccgccccgacgcggcgcaggggaggtcgcagttccagcaagaggtggaggtgctcagctgcatccgccacccgaacatggtgctcctcctcggcgcctgcccggagtacggctgcctcgtgtacgagtacatggcgaacggcagcctcgacgactgcctgttccggcgcggcggcggcggcgggccggtgatcccgtggcagcaccggttccgcatcgccgcggagatcgccacgggcctcctgttcctccaccagacgaagccggagccgctggtgcaccgcgacctcaagcccggcaacatcctcctcgaccgcaactacgtcagcaagatcagcgacgtcgggctggcgcggctcgtgccgccgaacgtcgccgacaacgtgacgcagtaccggatgacgtcgacggcggggacgttctgctacatcgacccggagtaccagcagacggggatgctcggcgtcaagtcggacgtgtactcgctgggcgtgatgctgctccagatcatcacggccaagccgccgatggggctcacccaccacgtcggccgcgccatggagcgcggcgcgctcgccgacatgctcgacccggccgtccccgactggcccgtcgaggaggcgcagtgcctcgccgagatggcgctccgctgctgcgagctccgccgcaaggacaggcccgacctcggctccgccgtgctcccggagctcaaccggcttcgcgcgctcggcgaggacaacatgcagttctgcggcgccatcagaggcggcgagttcatgggcgattcacaatacccaagatcggtgttcagctcaaggacgggtgaatcaccgatgcctccgagaagatcaaacgtttga
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| Protein seq | MERYHDGKDLDTSSYPLVAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHDASGFKQPTDPHMRDLYRTFRCFCTRKDIQCKDVLLDDHDVAKSITEFCAVAAIEKLVVGATARGGFRFKADIPTTISKGAPDFCTVYVINKGKVSSVRNSTRQAPRVSPLRSQIQNMAAAAAKPEPATAMAPTPQKWSSSSRGHDHLETPKVDSYIRSPFARGPMGGATRKSYADLSHLSMPDSADISFVSSGRRSVEHNPVPARLSAASAESYDHSFETSRTPWGGDSFGGNDHTSFSQSSTSSFCSIGMDDVETEMKRLRLELKQTMDMYSTACKEALNAKQKAMELQRWKAEEEQRTHDARLTEESAMALIEREKAKAKAAMDAAEASQRIAELEVQKRITAEKKLLKEAEDRKNRGGGGGGMSHEIRYRRYSIEEIEHATDRFNDARKIGEGGYGPVYKGHLDHTAVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGGGGGPVIPWQHRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPNVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGVMLLQIITAKPPMGLTHHVGRAMERGALADMLDPAVPDWPVEEAQCLAEMALRCCELRRKDRPDLGSAVLPELNRLRALGEDNMQFCGAIRGGEFMGDSQYPRSVFSSRTGESPMPPRRSNV |
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| Function | U-box domain-containing protein 52 [UniProtKB/Swiss-Prot:Q9FKG6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0006470 | OsLima_06g0006470.01 | Chr06 | 4753979 | 4757759 | - | NAM | ||
| CDS seq | atggagaggtatcatgacggcaaagacttggacacctccagctacccgcttgtcgccgtctgcatcgacaaggacaagaacagccagaacgccctcaagtgggccatcgacacacttgtccaaaagggccagatcatcgtgctcgtccatgacgcctccggcttcaagcagccgacggacccgcacatgagggatctctaccgcactttccgctgcttctgcacgcgcaaagacatccagtgcaaggacgtgctgctcgacgaccacgacgtggccaagtccatcaccgagttctgcgcggtcgccgccatcgagaagctcgtcgtcggcgccacggcgaggggcgggttcaggttcaaggccgacatcccgaccaccatctccaagggcgcgccggacttctgcacggtgtacgtcatcaacaaggggaaggtgtcgtcggtgcggaactccacccgccaggcgccgcgcgtgtcgccgctccggtcgcagatccagaacatggcggccgccgcggcgaagcccgagccggcgacggcgatggcgcccacgccgcagaagtggtcgtcgtcgtcgaggggccacgaccacctggagacgcccaaggtggacagctacatccgctcgccgttcgcgcgcggcccgatgggcggtgccacgcgcaagtcgtacgccgacctcagccacctctccatgccggactccgccgacatctcgttcgtcagctccggccgccgcagcgtcgagcacaatcccgtcccggcgcgcctgtccgccgcctcggccgaaagctacgaccacagcttcgagacgtcgcgcacgccgtggggcggagactccttcggcggcaacgaccacacctccttctcccagagcagcacctcctccttctgctccatcggcatggacgacgtggagacggagatgaagaggcttcggctggagctgaagcagaccatggacatgtacagcacggcgtgcaaggaggcgctgaacgcgaagcagaaggcgatggagctgcagcggtggaaggcggaggaggagcagaggacgcacgacgcgaggctgacggaggagtcggcgatggcgctgatcgagcgggagaaggccaaggcgaaggccgccatggacgccgcggaggcgtcgcagcggatcgccgagctcgaggtgcagaagcggatcaccgcggagaagaagctcctcaaggaggccgaggaccgcaagaaccgcggcggcggcggcggcggcatgtcgcacgagatccgctaccgccgctacagcatcgaggagatcgagcacgccaccgatcgtttcaacgacgcgcgcaagatcggcgagggcggctacggcccggtgtacaagggccacctcgaccacacggcggtcgccatcaaggtgctccgccccgacgcggcgcaggggaggtcgcagttccagcaagaggtggaggtgctcagctgcatccgccacccgaacatggtgctcctcctcggcgcctgcccggagtacggctgcctcgtgtacgagtacatggcgaacggcagcctcgacgactgcctgttccggcgcggcggcggcggcgggccggtgatcccgtggcagcaccggttccgcatcgccgcggagatcgccacgggcctcctgttcctccaccagacgaagccggagccgctggtgcaccgcgacctcaagcccggcaacatcctcctcgaccgcaactacgtcagcaagatcagcgacgtcgggctggcgcggctcgtgccgccgaacgtcgccgacaacgtgacgcagtaccggatgacgtcgacggcggggacgttctgctacatcgacccggagtaccagcagacggggatgctcggcgtcaagtcggacgtgtactcgctgggcgtgatgctgctccagatcatcacggccaagccgccgatggggctcacccaccacgtcggccgcgccatggagcgcggcgcgctcgccgacatgctcgacccggccgtccccgactggcccgtcgaggaggcgcagtgcctcgccgagatggcgctccgctgctgcgagctccgccgcaaggacaggcccgacctcggctccgccgtgctcccggagctcaaccggcttcgcgcgctcggcgaggacaacatgcagttctgcggcgccatcagaggcggcgagttcatgggcgattcacaatacccaagatcggtgttcagctcaaggacgggtgaatcaccgatgcctccgagaagatcaaacgtttga
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| Protein seq | MERYHDGKDLDTSSYPLVAVCIDKDKNSQNALKWAIDTLVQKGQIIVLVHDASGFKQPTDPHMRDLYRTFRCFCTRKDIQCKDVLLDDHDVAKSITEFCAVAAIEKLVVGATARGGFRFKADIPTTISKGAPDFCTVYVINKGKVSSVRNSTRQAPRVSPLRSQIQNMAAAAAKPEPATAMAPTPQKWSSSSRGHDHLETPKVDSYIRSPFARGPMGGATRKSYADLSHLSMPDSADISFVSSGRRSVEHNPVPARLSAASAESYDHSFETSRTPWGGDSFGGNDHTSFSQSSTSSFCSIGMDDVETEMKRLRLELKQTMDMYSTACKEALNAKQKAMELQRWKAEEEQRTHDARLTEESAMALIEREKAKAKAAMDAAEASQRIAELEVQKRITAEKKLLKEAEDRKNRGGGGGGMSHEIRYRRYSIEEIEHATDRFNDARKIGEGGYGPVYKGHLDHTAVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGGGGGPVIPWQHRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPNVADNVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGVMLLQIITAKPPMGLTHHVGRAMERGALADMLDPAVPDWPVEEAQCLAEMALRCCELRRKDRPDLGSAVLPELNRLRALGEDNMQFCGAIRGGEFMGDSQYPRSVFSSRTGESPMPPRRSNV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0140800 | SBH | 2.254488 | 2.710560 | 4.083457 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g09230 | RBH | 0.0 | 0.0 | 1.133445 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0140800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0006420 | RBH | 0.0 | 0.0 | 0.669559 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006250 | RBH | 0.024417 | 0.0 | 3.853649 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0006240 | RBH | 0.000000 | 0.0 | 4.960807 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0006360 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0006250 | RBH | 0.0 | 0.0 | 5.125711 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0078100 | RBH | 0.582972 | 0.457988 | 0.088987 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0006110 | RBH | 0.0 | 0.0 | 3.881742 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0078000 | RBH | 0.3058825 | 0.1695965 | 1.1377575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0006340 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0006350 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0006400 | RBH | 0.0 | 0.0 | 0.241825 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0006250 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G006080 | RBH | 0.086153 | 0.0 | 1.570406 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0006350 | RBH | 0.0 | 1.398136 | 10.449760 |
