Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0140800 | OGI:06005860 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:2140055-2146616 | ||||||||
| Gene Symbol | RLCK194, OsPUB51, PUB51, OsRLCK194, RLCK201, OsRLCK201 | ||||||||||
| DNA seq | AAAGCTTCATACTGAATTTTCATTAAGATTTCCTACAATCAGATCAAATGTTGAGAGCACTAATTACAAGCTTACAACACATCATTATGAATGGCAAAGGAGAAAAAAATAATTGTTCACCATTCACTAAGACAGTGAGGTGGAAGGTGTTTGCCTATGAGCTAGTAGGAAACAATTTCTACTACTACTATTTGATAAAGCTGCACAACTTGAACCTCTTTATGAACACCACTTATTTTATTTTATTTTTTATTTTTGGAACCAACATGAAGACTACTTCTACATGAGATCTGCAAAAAATTTACACCTTGAGAAGAAAATCAATCATCAACTGCTACATTCTGGAGAATGCAGGCCAGAATGTGTACCAGCTACTAACTCTTTGTTCTCCAGTCGATGATTGCAGAACGAAGCGAGTGATTTGGTATAAGGCTCTTGTGAGGCAATCTCAGATTTGTCATAGGGGACTTGTCATTCATACTTAGCCACAGCTCGATCGCCTTCCGGTCATATGTGTACCCATCCGATGCGACATATGGATCAGCCATCACTTCCTGAAACATTATTAAGAACATCATCAGCAAAGTTACTGTGATTCTCTTTTTCAAAGGGAAAAGGAGTAATTTTTGCTGTGAGACTGTCACAATCATGACAAGTGTTGATACAAACCTGAAGTATGGGGCAAATGAAGTGACTTGGAGGTGCTGTTTGGTGGCCATTAAAAGCCATTTCTCTGGCCTTGGTTGCAACATCCTTCAGCCGCTCCAATGCTGGAAGAACATGATCGCTCAAGTCGGGCCGGTCTCTGCGCCTCATTTCGGCACACTTTAGGGCTAGGAAAGCCAATTCTTGTGCCTCATTCAAAGGCCACTGCCCAGCAGCTGCATCCAGAATGTCCACGAAGTGTCCATCTTCTAGTGCAGTCTCCACAACATGGGCAATCCCCATTGGTGACTTCGCTGTCAGCAATTGCAAGATCACGATCCCTAGAGCATAAACATCGGACTTCATGGAGACCACGCCACTTCTCTGATACTCTGGGTCTATGTAACAGAAAGTGCCCACTGGAGCAGTGTTCTTGATCATTGTGGACAGGTACTGATCCATACTTGGAAGCAAAGTTGATAGACCTACATCACCTATCTTGCTAACCAAGTTCCTGTCAAGCAATATGTTTGCGGGCTTCAGATCCCGGTGTATGATAGGCTCTGGTTTGGAACTGTGAAGGAACATAAGAGCAGTTGCAACCTCCCAAGCAATTCTGAAACGGTCAAACCAGGTCAATGGCGGTGTATTATTTCTCCGTTGCAGCATGTCATCCAAGCTGCCATTTTCCATGAATTCGTAGACCAAGCAACCATGCTCAGGGCATGCACCTAGCATCAGGAGCAAGTGAGGGTGCCGGATTTTACCTAGGACCTCAAGCTGACAAAAGAAAAAAAGATGAGTTGCATCGTTTAGACTGAAGATGTTATTGTACTTTGAATAAGGATGATCAGAGGATGATTTTGCACTATATCTGCATAAATAGTTTGTGAACTCCTATTAAGACAGTTCAGAGGGTTCAAGAATTTTGTCTTAGCAAAAGAGAAGATTCTGCTGTTTGCTTTTGCACATCACAAAATAAAGGTGTACCACTGGAGAATGCTTTTTATTTTGTCAAATTTGATTGATGAAACCATTGCACTTCGTCCGGGGTTGTTTAATGGTGGTTAGATCTTGCCTTAGAGTACAGTGTACTGAACAGCTAAAAAGGTGAGTGTTGGGGAGAAAATGACAGTACCTCCTGTTGTAATTGCTGAGTTCCACAGCCTTCAGGGGAGTTCAGAACTTTTACTGCTGCAACTGTATGATGAAACTTAGCCTTGTACACTGTACCATATGATCCCCTGCCAATCATAAGATCCTCAGACAGTGACAAAGTCGATGCTTTTATCTCCTCCCAGGTATACCTGTTATACTCGTCAAAACAGCGCACGAAAATCCTCTCTCCTGTCTTATTCTCATCACCTTCCTGATTGCCATTACTCTGTTTTGTTGCTTCACTTTCAGCATTTTCATTTCTTAATTGATCTTCTCTTCTGGCAACTTCCTGTTCTTCTCTCTCTTTTTTCCTTATCAATCTCCTTACCTTTTCTTCTGTCAGTTCTGTCTCTTTAAGCTTAATTTCATCCTCAATGTCCTGGATGCCCAACTTATGTAACTAATAACAAACATTCAACTGGAAAAAGTTAGACATTGTAGGCTATGCCCAAATTTATTGTATAGCTCCTACCATTAAAATGTAAAACTTACTTTCTGATTGGCGTCCAATGATTCTTTCTGAGCTAACTCATTAAGCTTCTGAAGATGCCGTAGTTTAACCCTCAGCCTCTCAATCTCAAGCTTTAGATACTCCTGCTTAACAGAAGTTACATATAAGGGTATGAGAAACATGAAATTTTCAGTCATGTGCATATTACTTTGAAAAAGAATATGTTTCATCTTGTTTTCTTGAATGGATTTAATACCTGGTCATGAGAATGTTTCAGATTTGTTGCCATATCTGACACGGATGCCTGATCAGAGTTATCAAATGAACGATCTCTATTGAAGCTCTTATAGATAGAATTCCCACTGCTGCTGCTACTGAACCGTGTTTCTGAATTGATCGAGTGTGAACTTGTCAGGACTGTATCATCATGGTTGGAGATCTCACTCCCACCACTGCCTGAAGGGCTAGCTCTCCTGTTGGATAACTTATTCATGTTTGCAATTGCTTGGTCACGCTGAGATGACAGAGATGGCTGGTGGAATGACACATTTGCTGACCCATATGTGTCTCCCCATTCTGCAGTATTCAACATATTTAGTACACTGACAAAGAGAAAAAAAGGCATAAATGATCAAATACACAGTTCCTAAAAGGTTGCTACATCTAATCAAATGCATTAAATAGTCTAGGGTGGTAAATATGTTTATAAACCAGATGTTATCTTACATGTTACGCCAACATTCGGTCATTGATTATAAAAAATATATATATTCGGCCATTGAATTTAAAGAGAAATAACATGGCAAGTGCATGAATTGATGAACCTCAAAACATTCACGTGAAAATGATTGACAGTACTCTTCATTGACTTTTTTGCTGGTTCGGCTGAAAGGTTCGGTCGACCAATTTTATTAAGATTGGGAGAAATACAAAGTGAAAAAACATTGACTCTTCATTGACTTAGCTCTCAAGAAGTCGAATTCATTGTATTCAGTTGAAAGGTGTACCAACAAATACACAAGGCAAAAACATACAGACTTGTGTATTACCTGAGGGTACACTGGATGAAAAGCTTCTAGAGCTTGGGGATGAAACAGTTGAAGAAGAAATGGATTCAGGTGTTCCGATGGCATCAGATGTAGCTGAGTGCACAGATGATAGTTTTCCTTTTGAGACAACGTATGCTGTGCAGAAGCTTGGAATGCACTCACAGATTTTGGTCGCAGTCTTACTTCCTTTGTTTTTCCTGATATAGTAGTTAAAATTGTTAGCGATGTGACCAACATTGTACACATATAAAACACATTTTCTAACTCTAGAATGCACATGCTGTGAATTCTCAATAGAGCAGTTTTAAAAGGTCTATCGATTTAGAACGTACATAATGGTGAGTTGATGACCATTGTAAGTTGTATTAAAAAATGATCTACTGAAGAATTGCCCTGAACAAATGAATGTGAAACGTTGGATATGAGAGGAAGGGCTCTCATATCAAAATTTATTAAGAGAGTGGTGAGGCTCAAACCCGGGTCGGCTAGCCCACACCTCGTGGTGCTAGCCGGAAGACCCCCCGGGCCTTTCTCAAATGAATGTGAAACGACTACTCACTACATCCCAAAATATAACAACTTATAGCATTCAAAATTAGTCCCAAAATATAACAACTTATACCATTCAAAATTTATCCCAAAGTAAGTTCACTTTTATACATGAATTTGGATATAGGATAAGTCCATATTCATGTATAAAAGTAAACTTATTTTGAGACGGATGTATCTGCCCCTGCAGTACGCAATGCCTTTTTTGCTGTATAATTGTTCAGTTTGGATTGTTTGTCCACTTCTATTACTAACAAAACTTGCAATCAAGTAGTTGCATTGCAAACCTCAGTGGTAGGCTGGAACGTGGGGCATTAAATGATCAAGGATGATCATTGTACTGAAATCTTAGGTTTCCTTATGATCAATTATAATAGACCAGCTATCTGCCCAAAAGTTTATCGCCATTTGCACTAACTTGCCCAACTAATGCATGCCACTAGAATGGCATTTGTCCACAACTACACAGTGCAGCAACACTGTAGTGTTGAAACTTCCAATGATAGGTATTTTCTGGAAGTAGTAAGTAAGAATTCGAAAGGTTCCTGATAGATTACTGAATATAAATATATATAATTGTTAATTCTGATTTGTGGATCAGAAGACAAATTTTAGTACCCCTACAATTTGCAGTTAGTAATAGAAACATTGAGTAGCATGAGTATATGAATGTTTTTCAAACATTCAGTGGTCATGTATATAGATTTATATTTGGTAATATAAATAAATGCTCAAATAAATTAGGTAACGAATAACGGGGAGAATTAACCTTCGGAATATGCTGCTAGAAGAACCTAAAACTAACTTGCAGACACTGAATTTGCTGATTTCTTCGCTTATAGCAGTAGGCACATCGTCAGATTCGAGTAAAACAGCTTCAGCTTCTACCTGTACATCAGATAGAGTAAAGATGCTATTTTAGTCATCAGTTACACCAACCACCGCAATCAGCGCACTTAGACAAATTGTAGGATAACCTTTCTCTGAGCACACATCTTCTTGTAAGGAAGCAACATATTGTTTGCTTGCCATTCCACTTCTTTCTTGTATGCAGTTGCTACGTCTTCACGCACTTGTGTGATTGGAATGAAATTGCCCACTTAAAGGAGTAGGGAGAAAAGAAAAGCTCCGTATTAAATGGTCGAAATGGTAACTAGCAGAAAAACGCACTCCTAAATAGAAATTATCCACAATTAGTACACAAAAGTTATGGGATTCGTACTCTCCCTAATTATCCACAATTAGTACAATCAAACAACCTCATATTGCAGCACCCCAAACTATTTTAGTTGGTACTCGGTAGTTGTGACATTACAATCACAACTTTGTTCATAGATGATTAGATGGTACTATTGAACAGATCTAGATCAATTATTGAAAGTTTGGAACTGATAAAAAGCACTTCAATTTCCTGCCTCCCCGTTTAATTGAAGCTAGGAGTATATTCCTATATGACATCAAAAGATACCACATAGATACCTTGGGTACAGAGCATAATACGTATATATCTTTCCACTAGTTGCAGTGAGCAAAATATTTGTTTATCATCCATTAGTCCCTTCTCGCAAATCAGATTTTTTTTAAAAAAATAATAATCAAGAGCTCAAGTTTCACACTCATCAATTGGGTTGGGTAGTAGTAGGCAACAACGACAATGTGCATTGTATTTGGCTAGTCTATGCAGCTTTGTGAAACGAATTCCACATTTGGTGGCAATGACCAAGTAAAACCTCTCATTTTAATTCCCCTCTCTGATGTATCAAATGACACCTCCTCCGATCAAAACTTCCTAAACAACAAACCATAGTATTTGATATTCCCCTCTTTAAGAAAAAGGAAATTAAAAAAAAAACTCATCCAAGAGACTAGTCACTTCACAACAAGGTTCATTGCCTCCAAAGACTGCATATTTTTCCCCCCATCCCTGTAAACTGCAAGAACTGAAAATTCAGAGAATCAAGAGGAAGAAATGTCTCACTTGGAGTTGGCACCATCTTGATGGTGGGGCGGACATGCAAGATCTGGAAGAGGACCTTTCCTTCGGGGACGAACTTGTCGAGAGCCCACTTGAGTGCGTGCTTGCTGTTCCTGCTCCCGTTCACCGCAATCGCCACCGTGCTCACGCTCGGAGCCTCCATTTCCAGCTCATCCTCCCCGGCGCCGCCCGCCTCCTCGATCTCCATCTCCCTCACCCTCTCCCTCGATTCTTGATTCCTCCTCTCAACTAATCACTGTCCCAAGAAAAAAAGAGCCAAATGATTAGAACAAAAAACAAATCGCCCTGTCCGTGATTCTTCCCCCAAAATTCCTCGCAACACAATGCATAAACAGTCATGGGAAATAATCTCAGAAACGCAAAGGAAAATCCCTGTCCGTGATTCTTCCCCCAAATTTCTCGCAACACAATGCACAAACAGTCATGTGAAATCTCAGGAACGCAAAGGAAAATCCCAGGTAAAAAAACCCACAATCCATATGGCGAAAAAGGAAGAAAAAACCGGTACGACAAGATCCCCCCTCCAAAAAAAAAAAAACAAAAGGCGACAGCTTTCAGCCGGGGTTGATGTTTCGGATGAAACAAGAACTCGCGAGGGGCAGAGAGATTGCCTTGTCCGTACCTCTGAGGCATGGAGGAGACGAGGAGAGTGGCGATGAGAGGGGAGGAGGAGACTGAAGACGACGGGTATAGAGTCAAGCTAGAGGTGCCGAC
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| CDS seq | ATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGAAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAATGGGCAATTTCATTCCAATCACACAAGTGCGTGAAGACGTAGCAACTGCATACAAGAAAGAAGTGGAATGGCAAGCAAACAATATGTTGCTTCCTTACAAGAAGATGTGTGCTCAGAGAAAGGTAGAAGCTGAAGCTGTTTTACTCGAATCTGACGATGTGCCTACTGCTATAAGCGAAGAAATCAGCAAATTCAGTGTCTGCAAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAGGAAAAACAAAGGAAGTAAGACTGCGACCAAAATCTGTGAGTGCATTCCAAGCTTCTGCACAGCATACGTTGTCTCAAAAGGAAAACTATCATCTGTGCACTCAGCTACATCTGATGCCATCGGAACACCTGAATCCATTTCTTCTTCAACTGTTTCATCCCCAAGCTCTAGAAGCTTTTCATCCAGTGTACCCTCAGAATGGGGAGACACATATGGGTCAGCAAATGTGTCATTCCACCAGCCATCTCTGTCATCTCAGCGTGACCAAGCAATTGCAAACATGAATAAGTTATCCAACAGGAGAGCTAGCCCTTCAGGCAGTGGTGGGAGTGAGATCTCCAACCATGATGATACAGTCCTGACAAGTTCACACTCGATCAATTCAGAAACACGGTTCAGTAGCAGCAGCAGTGGGAATTCTATCTATAAGAGCTTCAATAGAGATCGTTCATTTGATAACTCTGATCAGGCATCCGTGTCAGATATGGCAACAAATCTGAAACATTCTCATGACCAGGAGTATCTAAAGCTTGAGATTGAGAGGCTGAGGGTTAAACTACGGCATCTTCAGAAGCTTAATGAGTTAGCTCAGAAAGAATCATTGGACGCCAATCAGAAATTACATAAGTTGGGCATCCAGGACATTGAGGATGAAATTAAGCTTAAAGAGACAGAACTGACAGAAGAAAAGGTAAGGAGATTGATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGAAGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGCAATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAGTATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTTATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCAGCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATTACAACAGGAGCTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAGCATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGGAGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCAACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAGCCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCTCCAGTGGGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCCGATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGGATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAG
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| Protein seq | MEIEEAGGAGEDELEMEAPSVSTVAIAVNGSRNSKHALKWALDKFVPEGKVLFQILHVRPTIKMVPTPMGNFIPITQVREDVATAYKKEVEWQANNMLLPYKKMCAQRKVEAEAVLLESDDVPTAISEEISKFSVCKLVLGSSSSIFRRKNKGSKTATKICECIPSFCTAYVVSKGKLSSVHSATSDAIGTPESISSSTVSSPSSRSFSSSVPSEWGDTYGSANVSFHQPSLSSQRDQAIANMNKLSNRRASPSGSGGSEISNHDDTVLTSSHSINSETRFSSSSSGNSIYKSFNRDRSFDNSDQASVSDMATNLKHSHDQEYLKLEIERLRVKLRHLQKLNELAQKESLDANQKLHKLGIQDIEDEIKLKETELTEEKVRRLIRKKEREEQEVARREDQLRNENAESEATKQSNGNQEGDENKTGERIFVRCFDEYNRYTWEEIKASTLSLSEDLMIGRGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLLMLGACPEHGCLVYEFMENGSLDDMLQRRNNTPPLTWFDRFRIAWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPEYQRSGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEDGHFVDILDAAAGQWPLNEAQELAFLALKCAEMRRRDRPDLSDHVLPALERLKDVATKAREMAFNGHQTAPPSHFICPILQEVMADPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKSLIPNHSLRSAIIDWRTKS |
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| Function | U-box domain-containing protein 35 [UniProtKB/Swiss-Prot:Q9SW11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0140800 | OsNip_06t0140800-01 | Chr06 | 2140055 | 2146616 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGATCGAGGAGGCGGGCGGCGCCGGGGAGGATGAGCTGGAAATGGAGGCTCCGAGCGTGAGCACGGTGGCGATTGCGGTGAACGGGAGCAGGAACAGCAAGCACGCACTCAAGTGGGCTCTCGACAAGTTCGTCCCCGAAGGAAAGGTCCTCTTCCAGATCTTGCATGTCCGCCCCACCATCAAGATGGTGCCAACTCCAATGGGCAATTTCATTCCAATCACACAAGTGCGTGAAGACGTAGCAACTGCATACAAGAAAGAAGTGGAATGGCAAGCAAACAATATGTTGCTTCCTTACAAGAAGATGTGTGCTCAGAGAAAGGTAGAAGCTGAAGCTGTTTTACTCGAATCTGACGATGTGCCTACTGCTATAAGCGAAGAAATCAGCAAATTCAGTGTCTGCAAGTTAGTTTTAGGTTCTTCTAGCAGCATATTCCGAAGGAAAAACAAAGGAAGTAAGACTGCGACCAAAATCTGTGAGTGCATTCCAAGCTTCTGCACAGCATACGTTGTCTCAAAAGGAAAACTATCATCTGTGCACTCAGCTACATCTGATGCCATCGGAACACCTGAATCCATTTCTTCTTCAACTGTTTCATCCCCAAGCTCTAGAAGCTTTTCATCCAGTGTACCCTCAGAATGGGGAGACACATATGGGTCAGCAAATGTGTCATTCCACCAGCCATCTCTGTCATCTCAGCGTGACCAAGCAATTGCAAACATGAATAAGTTATCCAACAGGAGAGCTAGCCCTTCAGGCAGTGGTGGGAGTGAGATCTCCAACCATGATGATACAGTCCTGACAAGTTCACACTCGATCAATTCAGAAACACGGTTCAGTAGCAGCAGCAGTGGGAATTCTATCTATAAGAGCTTCAATAGAGATCGTTCATTTGATAACTCTGATCAGGCATCCGTGTCAGATATGGCAACAAATCTGAAACATTCTCATGACCAGGAGTATCTAAAGCTTGAGATTGAGAGGCTGAGGGTTAAACTACGGCATCTTCAGAAGCTTAATGAGTTAGCTCAGAAAGAATCATTGGACGCCAATCAGAAATTACATAAGTTGGGCATCCAGGACATTGAGGATGAAATTAAGCTTAAAGAGACAGAACTGACAGAAGAAAAGGTAAGGAGATTGATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGAAGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGCAATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAGTATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTTATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCAGCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATTACAACAGGAGCTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAGCATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGGAGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCAACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAGCCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCTCCAGTGGGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCCGATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGGATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAG
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| Protein seq | MEIEEAGGAGEDELEMEAPSVSTVAIAVNGSRNSKHALKWALDKFVPEGKVLFQILHVRPTIKMVPTPMGNFIPITQVREDVATAYKKEVEWQANNMLLPYKKMCAQRKVEAEAVLLESDDVPTAISEEISKFSVCKLVLGSSSSIFRRKNKGSKTATKICECIPSFCTAYVVSKGKLSSVHSATSDAIGTPESISSSTVSSPSSRSFSSSVPSEWGDTYGSANVSFHQPSLSSQRDQAIANMNKLSNRRASPSGSGGSEISNHDDTVLTSSHSINSETRFSSSSSGNSIYKSFNRDRSFDNSDQASVSDMATNLKHSHDQEYLKLEIERLRVKLRHLQKLNELAQKESLDANQKLHKLGIQDIEDEIKLKETELTEEKVRRLIRKKEREEQEVARREDQLRNENAESEATKQSNGNQEGDENKTGERIFVRCFDEYNRYTWEEIKASTLSLSEDLMIGRGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLLMLGACPEHGCLVYEFMENGSLDDMLQRRNNTPPLTWFDRFRIAWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPEYQRSGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEDGHFVDILDAAAGQWPLNEAQELAFLALKCAEMRRRDRPDLSDHVLPALERLKDVATKAREMAFNGHQTAPPSHFICPILQEVMADPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKSLIPNHSLRSAIIDWRTKS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0140800 | OsNip_06t0140800-02 | Chr06 | 2140306 | 2142183 | - | RAP2018-11-26 | ||
| CDS seq | AGGAGATTGATAAGGAAAAAAGAGAGAGAAGAACAGGAAGTTGCCAGAAGAGAAGATCAATTAAGAAATGAAAATGCTGAAAGTGAAGCAACAAAACAGAGTAATGGCAATCAGGAAGGTGATGAGAATAAGACAGGAGAGAGGATTTTCGTGCGCTGTTTTGACGAGTATAACAGGTATACCTGGGAGGAGATAAAAGCATCGACTTTGTCACTGTCTGAGGATCTTATGATTGGCAGGGGATCATATGGTACAGTGTACAAGGCTAAGTTTCATCATACAGTTGCAGCAGTAAAAGTTCTGAACTCCCCTGAAGGCTGTGGAACTCAGCAATTACAACAGGAGCTTGAGGTCCTAGGTAAAATCCGGCACCCTCACTTGCTCCTGATGCTAGGTGCATGCCCTGAGCATGGTTGCTTGGTCTACGAATTCATGGAAAATGGCAGCTTGGATGACATGCTGCAACGGAGAAATAATACACCGCCATTGACCTGGTTTGACCGTTTCAGAATTGCTTGGGAGGTTGCAACTGCTCTTATGTTCCTTCACAGTTCCAAACCAGAGCCTATCATACACCGGGATCTGAAGCCCGCAAACATATTGCTTGACAGGAACTTGGTTAGCAAGATAGGTGATGTAGGTCTATCAACTTTGCTTCCAAGTATGGATCAGTACCTGTCCACAATGATCAAGAACACTGCTCCAGTGGGCACTTTCTGTTACATAGACCCAGAGTATCAGAGAAGTGGCGTGGTCTCCATGAAGTCCGATGTTTATGCTCTAGGGATCGTGATCTTGCAATTGCTGACAGCGAAGTCACCAATGGGGATTGCCCATGTTGTGGAGACTGCACTAGAAGATGGACACTTCGTGGACATTCTGGATGCAGCTGCTGGGCAGTGGCCTTTGAATGAGGCACAAGAATTGGCTTTCCTAGCCCTAAAGTGTGCCGAAATGAGGCGCAGAGACCGGCCCGACTTGAGCGATCATGTTCTTCCAGCATTGGAGCGGCTGAAGGATGTTGCAACCAAGGCCAGAGAAATGGCTTTTAATGGCCACCAAACAGCACCTCCAAGTCACTTCATTTGCCCCATACTTCAGGAAGTGATGGCTGATCCATATGTCGCATCGGATGGGTACACATATGACCGGAAGGCGATCGAGCTGTGGCTAAGTATGAATGACAAGTCCCCTATGACAAATCTGAGATTGCCTCACAAGAGCCTTATACCAAATCACTCGCTTCGTTCTGCAATCATCGACTGGAGAACAAAGAGTTAG
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| Protein seq | RRLIRKKEREEQEVARREDQLRNENAESEATKQSNGNQEGDENKTGERIFVRCFDEYNRYTWEEIKASTLSLSEDLMIGRGSYGTVYKAKFHHTVAAVKVLNSPEGCGTQQLQQELEVLGKIRHPHLLLMLGACPEHGCLVYEFMENGSLDDMLQRRNNTPPLTWFDRFRIAWEVATALMFLHSSKPEPIIHRDLKPANILLDRNLVSKIGDVGLSTLLPSMDQYLSTMIKNTAPVGTFCYIDPEYQRSGVVSMKSDVYALGIVILQLLTAKSPMGIAHVVETALEDGHFVDILDAAAGQWPLNEAQELAFLALKCAEMRRRDRPDLSDHVLPALERLKDVATKAREMAFNGHQTAPPSHFICPILQEVMADPYVASDGYTYDRKAIELWLSMNDKSPMTNLRLPHKSLIPNHSLRSAIIDWRTKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.254488 | 2.710560 | 4.083457 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g04880 | RBH | 0.956490 | 1.108994 | 1.044047 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0140800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0002980 | RBH | 1.065723 | 20.027258 | 9.086792 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0002910 | RBH | 0.586968 | 4.890270 | 1.617566 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0002850 | RBH | 1.174858 | 21.466757 | 11.382237 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0002830 | RBH | 0.454899 | 0.329212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0002830 | RBH | 11.494032 | 11.361133 | 18.408499 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0034200 | RBH | 12.9448525 | 22.6181165 | 10.885598 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0002770 | RBH | 0.598221 | 0.495438 | 1.640639 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0034600 | RBH | 12.8314875 | 17.7278735 | 13.7217465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0002910 | RBH | 0.642607 | 0.718079 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0002770 | RBH | 1.199777 | 20.027462 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0002800 | RBH | 12.760261 | 20.169754 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0002780 | RBH | 0.134318 | 0.297587 | 0.356165 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0002670 | RBH | 0.914559 | 6.538834 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G002720 | RBH | 0.996782 | 6.650476 | 3.654688 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0002890 | RBH | 3.099340 | 23.963854 | 7.712540 |
