Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0005010 | OGI:06009960 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:3557641-3558787 | ||||||||
| Gene Symbol | OsPAC1 | ||||||||||
| DNA seq | aacctcacccgattcacacctctcccctcacttctcccccctcaaatccccaaatctaaccggagaaaaccccaatctctcgccgccgccgccgtgatgtctcgccggtacgacagccgcacgacgatcttctcgccggaggggcgtctctaccaggtggagtacgcgatggaggcgatcgggaacgccgggtcggccctcggcgtcctggcggccgacggcgtggtcctcgtcggcgagaagaaggtcacctccaagctcctccagacctcgcgctccgccgagaagatgtacaagatcgactcccacctcgcctgcgccgtcgccgggatcatgtccgacgccaacatcctcctcaacacggcgcgcctccacgcccagcgctacgccctctcctaccaggagcccatccccgtcgagcagctcgtccaatccctctgcgacaccaagcaggggtacacccagttcggcggcctccgccccttcggcgtctccttcctcttcgccggctgggacaagcaccatggcttccagctctacatgagcgatccctccggcaactacagcggctggaaggccgcggccgtcggggccaacagccaggcggcgcagtccatgctcaagcaggactaccgcgacggcctgacccgggaggaggccgtagccctcgccctcaaggtcctgagcaagaccatggattcgaccagcttgaccgccgagaagctggagctcgccgaggtgttcctgcagcccggcaccggggaggtgcagtaccaggtgtgctcccctgaggcgatggggaagctgctcgccaaggccggcctctcgcagccggcgcctgaggcttgatgtgctggtttgctgtgccttgtgatgcctgctgctcttagatggttttatcattattatgcttcttgttatctaaaccaaactatctgataatcatgtgttttaattttatgttggacatgcttgggcggtcgatgctttatctatgacagtgaattcccttaagtttgttcaattttgcgatttctgtatgccttgcttgattgttattgtggtaagggagataggtactatgaaaaacaagggtgtagggtaaagggtaaaatcgtttgagatctatgcatgtgattatattgtc
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| CDS seq | atgtctcgccggtacgacagccgcacgacgatcttctcgccggaggggcgtctctaccaggtggagtacgcgatggaggcgatcgggaacgccgggtcggccctcggcgtcctggcggccgacggcgtggtcctcgtcggcgagaagaaggtcacctccaagctcctccagacctcgcgctccgccgagaagatgtacaagatcgactcccacctcgcctgcgccgtcgccgggatcatgtccgacgccaacatcctcctcaacacggcgcgcctccacgcccagcgctacgccctctcctaccaggagcccatccccgtcgagcagctcgtccaatccctctgcgacaccaagcaggggtacacccagttcggcggcctccgccccttcggcgtctccttcctcttcgccggctgggacaagcaccatggcttccagctctacatgagcgatccctccggcaactacagcggctggaaggccgcggccgtcggggccaacagccaggcggcgcagtccatgctcaagcaggactaccgcgacggcctgacccgggaggaggccgtagccctcgccctcaaggtcctgagcaagaccatggattcgaccagcttgaccgccgagaagctggagctcgccgaggtgttcctgcagcccggcaccggggaggtgcagtaccaggtgtgctcccctgaggcgatggggaagctgctcgccaaggccggcctctcgcagccggcgcctgaggcttga
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| Protein seq | MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGKLLAKAGLSQPAPEA |
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| Function | Proteasome subunit alpha type-4-2 [UniProtKB/Swiss-Prot:Q5VRG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0005010 | OsLima_06g0005010.01 | Chr06 | 3557641 | 3558787 | + | NAM | ||
| CDS seq | atgtctcgccggtacgacagccgcacgacgatcttctcgccggaggggcgtctctaccaggtggagtacgcgatggaggcgatcgggaacgccgggtcggccctcggcgtcctggcggccgacggcgtggtcctcgtcggcgagaagaaggtcacctccaagctcctccagacctcgcgctccgccgagaagatgtacaagatcgactcccacctcgcctgcgccgtcgccgggatcatgtccgacgccaacatcctcctcaacacggcgcgcctccacgcccagcgctacgccctctcctaccaggagcccatccccgtcgagcagctcgtccaatccctctgcgacaccaagcaggggtacacccagttcggcggcctccgccccttcggcgtctccttcctcttcgccggctgggacaagcaccatggcttccagctctacatgagcgatccctccggcaactacagcggctggaaggccgcggccgtcggggccaacagccaggcggcgcagtccatgctcaagcaggactaccgcgacggcctgacccgggaggaggccgtagccctcgccctcaaggtcctgagcaagaccatggattcgaccagcttgaccgccgagaagctggagctcgccgaggtgttcctgcagcccggcaccggggaggtgcagtaccaggtgtgctcccctgaggcgatggggaagctgctcgccaaggccggcctctcgcagccggcgcctgaggcttga
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| Protein seq | MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGKLLAKAGLSQPAPEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.713181 | 0.551080 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0176000 | SBH | 1.413051 | 0.854717 | 5.094061 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07140 | RBH | 3.769666 | 3.701220 | 3.417146 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0177100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004970 | RBH | 0.894304 | 35.766399 | 13.548486 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005360 | SBH | 0.081102 | 2.376213 | 1.774719 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004820 | RBH | 1.571752 | 47.040401 | 15.403520 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005010 | RBH | 0.436315 | 1.688500 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004900 | RBH | 11.796553 | 79.213303 | 20.807499 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0059200 | RBH | 9.283843 | 15.4677205 | 7.461844 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004760 | RBH | 1.251084 | 4.342477 | 1.666539 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0058700 | RBH | 16.7318105 | 15.613113 | 23.9417515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005580 | RBH | 0.051954 | 0.153167 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004860 | RBH | 0.935464 | 63.723698 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004870 | RBH | 4.425513 | 70.436012 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005460 | SBH | 0.407542 | 0.979745 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004770 | RBH | 0.390604 | 22.010254 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004650 | RBH | 1.182943 | 22.892122 | 4.729385 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004930 | RBH | 1.253670 | 38.277782 | 14.795855 |
