Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0176000 | OGI:06009960 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:3832018-3833094 | ||||||||
| Gene Symbol | OsPAC1 | ||||||||||
| DNA seq | ACATCTCAACTGAATTAGTAATAGTAGATCTCTCGCCGTCGCCGCCTCCGCCTCCGCCGCCGGAATCCCCAGCAACAACCCGCCGCCGCGATGTCTCGCCGGTACGACAGCCGCACGACGATCTTCTCGCCGGAGGGGCGGCTCTACCAGGTGGAGTACGCGATGGAGGCGATCGGGAACGCAGGGTCGGCCCTGGGCGTCCTGGCGGCCGACGGCGTGGTCCTCGTCGGCGAGAAGAAGGTCACCTCCAAGCTCCTCCAGACCTCGCGCTCCGCCGAGAAGATGTACAAGATCGACTCCCACCTCGCCTGCGCCGTCGCCGGGATCATGTCGGACGCCAACATCCTCCTCAACACGGCGCGCCTCCACGCCCAGCGCTACGCCCTCTCCTACCAGGAGCCCATCCCCGTCGAGCAGCTCGTCCAATCCCTCTGCGACACCAAGCAGGGGTACACCCAGTTCGGCGGCCTCCGCCCCTTCGGCGTCTCCTTCCTCTTCGCCGGCTGGGACAAGCACCATGGCTTCCAGCTCTACATGAGCGACCCCTCCGGCAACTACAGCGGCTGGAAGGCCGCCGCCGTCGGGGCCAACAGCCAGGCGGCGCAGTCCATGCTCAAGCAGGACTACCGCGACGGGATGACACGGGAGGAGGCCGTCGCCCTCGCCCTCAAGGTGCTTAGCAAGACCATGGATTCGACCAGCTTGACCGCCGAGAAGCTGGAGCTCGCCGAGGTGTTCTTGCAGCCCGGCACCGGGGAGGTGCAGTACCAGGTGTGCTCGCCTGAGGCGATGGGGAAGCTGCTCGCCAAGGCCGGCCTCTCGCAGCCGGCGCCTGAGGCTTGATCTACTGAGATGGTTTGCTTCTTGTTCTCGCAATTCGGTTGGTGTTTAATCCATGTGATGGTAAACAGTTGATGAATTTAGTATAAATTTTCTTTTAAGAGTTGCCATCAGCTATGGTTTGAAATCAATCCAGATTGTTGTGTGTTATCGTCCTATTTCTTATCAGCAAGAACCCTTCTTAGTGATTATATGGTTATATTGAGTATATTTATAGAGCCCAAATACCTTGGACAT
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| CDS seq | ATGTCTCGCCGGTACGACAGCCGCACGACGATCTTCTCGCCGGAGGGGCGGCTCTACCAGGTGGAGTACGCGATGGAGGCGATCGGGAACGCAGGGTCGGCCCTGGGCGTCCTGGCGGCCGACGGCGTGGTCCTCGTCGGCGAGAAGAAGGTCACCTCCAAGCTCCTCCAGACCTCGCGCTCCGCCGAGAAGATGTACAAGATCGACTCCCACCTCGCCTGCGCCGTCGCCGGGATCATGTCGGACGCCAACATCCTCCTCAACACGGCGCGCCTCCACGCCCAGCGCTACGCCCTCTCCTACCAGGAGCCCATCCCCGTCGAGCAGCTCGTCCAATCCCTCTGCGACACCAAGCAGGGGTACACCCAGTTCGGCGGCCTCCGCCCCTTCGGCGTCTCCTTCCTCTTCGCCGGCTGGGACAAGCACCATGGCTTCCAGCTCTACATGAGCGACCCCTCCGGCAACTACAGCGGCTGGAAGGCCGCCGCCGTCGGGGCCAACAGCCAGGCGGCGCAGTCCATGCTCAAGCAGGACTACCGCGACGGGATGACACGGGAGGAGGCCGTCGCCCTCGCCCTCAAGGTGCTTAGCAAGACCATGGATTCGACCAGCTTGACCGCCGAGAAGCTGGAGCTCGCCGAGGTGTTCTTGCAGCCCGGCACCGGGGAGGTGCAGTACCAGGTGTGCTCGCCTGAGGCGATGGGGAAGCTGCTCGCCAAGGCCGGCCTCTCGCAGCCGGCGCCTGAGGCTTGA
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| Protein seq | MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGKLLAKAGLSQPAPEA |
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| Function | Proteasome subunit alpha type-4-3 [UniProtKB/Swiss-Prot:P0DKK4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0176000 | OsNip_06t0176000-01 | Chr06 | 3832018 | 3833094 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCTCGCCGGTACGACAGCCGCACGACGATCTTCTCGCCGGAGGGGCGGCTCTACCAGGTGGAGTACGCGATGGAGGCGATCGGGAACGCAGGGTCGGCCCTGGGCGTCCTGGCGGCCGACGGCGTGGTCCTCGTCGGCGAGAAGAAGGTCACCTCCAAGCTCCTCCAGACCTCGCGCTCCGCCGAGAAGATGTACAAGATCGACTCCCACCTCGCCTGCGCCGTCGCCGGGATCATGTCGGACGCCAACATCCTCCTCAACACGGCGCGCCTCCACGCCCAGCGCTACGCCCTCTCCTACCAGGAGCCCATCCCCGTCGAGCAGCTCGTCCAATCCCTCTGCGACACCAAGCAGGGGTACACCCAGTTCGGCGGCCTCCGCCCCTTCGGCGTCTCCTTCCTCTTCGCCGGCTGGGACAAGCACCATGGCTTCCAGCTCTACATGAGCGACCCCTCCGGCAACTACAGCGGCTGGAAGGCCGCCGCCGTCGGGGCCAACAGCCAGGCGGCGCAGTCCATGCTCAAGCAGGACTACCGCGACGGGATGACACGGGAGGAGGCCGTCGCCCTCGCCCTCAAGGTGCTTAGCAAGACCATGGATTCGACCAGCTTGACCGCCGAGAAGCTGGAGCTCGCCGAGGTGTTCTTGCAGCCCGGCACCGGGGAGGTGCAGTACCAGGTGTGCTCGCCTGAGGCGATGGGGAAGCTGCTCGCCAAGGCCGGCCTCTCGCAGCCGGCGCCTGAGGCTTGA
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| Protein seq | MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGKLLAKAGLSQPAPEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.413051 | 0.854717 | 5.094061 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0177100 | RBH | 1.301959 | 0.842658 | 5.099564 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g07978 | SBH | 1.101261 | 0.605004 | 1.401696 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0176000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005500 | RBH | 0.462813 | 2.665607 | 3.689684 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005360 | SBH | 0.081102 | 2.376213 | 1.774719 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005310 | RBH | 0.598219 | 4.222467 | 2.356390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005010 | RBH | 0.436315 | 1.688500 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005390 | SBH | 0.897221 | 14.141024 | 1.427723 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0066800 | RBH | 1.6442925 | 3.2157855 | 3.5371895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004760 | SBH | 1.251084 | 4.342477 | 1.666539 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0065900 | RBH | 1.6327195 | 2.566668 | 8.0310675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005580 | RBH | 0.051954 | 0.153167 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005420 | RBH | 0.286546 | 5.203808 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005430 | SBH | 5.212600 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0005460 | RBH | 0.407542 | 0.979745 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005280 | SBH | 0.390701 | 1.967214 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004650 | SBH | 1.182943 | 22.892122 | 4.729385 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004930 | SBH | 1.253670 | 38.277782 | 14.795855 |
