Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0002870 | OGI:06005820 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:2173122-2177034 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatgcaaccatgttgggtatcatgatgacgaagacaatgcagaatccaaatgcaaaccctaacagagcacttaagtatgtctccaaatcgaagttcagtttatgcttccttttgtggtacaaacagcttcttgacagtggaggcccacatagaccagcattaccaaaatatgtgctttctgcaaaagtttcaagtccatttccaaatggtatagctcctgaaaggtcattgtaggataaattcagacggctcaaaccagacaatgacaggaagcactgtggaattgggcctgacagatcgttcctggagagatcaagcacttctaaacttcttaagtttcccaactcctctggaatgctccctcttatgtgatttcctgacaaatttaaacctgttagtccagatagaaatccaatttcaataggaatctcccctgctaattggttaccagagagatcgatatagaaggcagttccattatattgaagcttgccagcaagcagactattcaagtataagtatgcatacagccgatacaagactgcaccacttgcaccataaaccatgaaatggatgtccgaaatggtgctaaattgctgttgtatcatgtgcctgcctaactgcatggctgctaaatttcccaaggatttgggtacagggcctgatagattgttatcagcaatatctaaaatttgaagagcgtgaagctgagatagtagctcgggaattttaccagaaaagttgttggaccttaaactgaggagaatcagagactgcaggctgtcacctatccaggttggtatggtcccagacaaattattttcagaaagatcaagaaagattaatctgttgcatagcttcagtgaggtggggagtggaccagataacttgttcctgtggagtaacaatgatccaagggaagttagatgacccatggttgaagatatttctccgtgaatgttattgtttgagaagtctataattctcagcgctgaatctttcctccagcaatttgggagtacacctgtgaagttgtttagtgatagaagaacctgttccatccaaaccatctcacataggtatgtagggatgcttccactgaggaagttgtctttgagtgatagatagtacatttctttggcacccaggctttgtggcaatggtccatataagtggttacttgacagatccaatactttcacactagatggcagatcaggaatgcatccctccagttggttcgaactcatgtcgagtaactccagcgctttcatgtgctttaaacttttgggcaactctctattaatcatatttcctgagacatccaaggcactaattgttgatgagaagttccagagtcaatcaggtaacttgctcttgatctgtgctctgcttaactcgatcatttcaattttggcttgtgacttcagccatgcagggaagtgtggtcctacctgacatccataaagtactaggactcggagttggaatggtggcacccagtctgcttcagtgacaatcttcacagaaattgactctaaaattagcatatccagcttggacagattagcaaagtggagttcggacagtgtaccttgaaatgaattggctgaaagatctaagtaggttaagtttgataacttgccaatatcatctgatactcgtccggataatgagttctcactaagatcaagagtagttacacttgctatgtgcctgacccaaccagacagactcccggttagattattgagtgcaaggtcaagaatcttcaactggttcatgcaggggaacaaggtattagcaagtcttgtaatatctcctgagaaatggtttccagataaatcaatgtggcgtaggttgcacaacctactcatggatccaggtatttcaccttcaaggttgttcgctcgtaatcgaaaaaaactgagggatgtcaagttcccaaggttcctgggaagtgagcctgaaagctcacagctagacaagtccaaatatgcaagagaacttagctttgaaatccaatctggcattcgtgaactgaagttgttactcttcagatcaagtaccctaatggctgtgaagttggtatgagaaagagcattcaagtctgtggcaggaagaaacgcatgattcaagcagaggactttaagcaaaggaagcgtatttgtagcctgcaaccaatcagaggaagcagcaagatacaaccaactaaggtctagatagaccagtgaagtgaggcgagacacccagtcgaagcttttgacagtaactgtatgacttggtgagctcaaatcaaggtggctgagcattgataaattaccaagccgaggaggaactgtccctccaaaaccagcatgcgaaagatcaagatacctcagtttctcgaaggagcctatgaaatctgggatggccaccccaccgaaatcatttccactcaggttaaggtacactagatgtgtcagaacagccagagatgagttgatttcacctctgaaagtgagatcataatggccgatatccaggctgacaacactgccgatctttttgctgcaggacaccccactccatgcgcagcagtcttggccttgccagaaacgcagcgcccctccagcaggatcagcgaaaccggctttgaaagcaagcagagcgtccctctcactggagatgcacgcagcatcagtgatcttgcctgcatttgtgatcaactggcaaagaacaagcaacgctgcaagcattatcccttgcatcattcctctgatggctaattggctaattcagctcaagttagtttccaactagagcaagctttagtttccctgaagcaaaggtaagttaaagtcgccctaccttttatgcataaaaagatgtaagttaaagcctttttgctaaacagaaatagcgccgcagtttcgattcgatttcagtcaatttttttccctatgtgattgctacattttttcttatatgtaaattgctacatttttttcttatatgtaaatatgttttctatctcttacatctcctttatcaggtaggtaatcaatcgatcttccctatttctcttatatggtgtgtactagaaaatttacaattacagtgtcagtattgaaatttacagtgtaagttttaaaagttacaacaaaattactacacaatgtaaatatatgttcatttacagtctcttttttggtgaaagaaattgtgacgccataaatatagttagtctcaatctaaacggcggcttcaacttaaaagaggcttcaagttaaagacgatagcttcaaacttcaaagtcagcacagggagctttcctctattcccagttttactaagttaaaccctgacgttttgcgggaagaaaatttcacaggaaaccagacgcaatctgcagtaacaataaccaggtcatttctcactttctcaccttctctcattcgatatacctttccgcgttgatccaaatcacgcacgcgcgcagccaggcgtccgcttcgatgcgactgtgcgagcacagtgaagcgaaacaggaaccgcatcgagcgcacgactgcacgagatgcgcgggtaacgggggaagaggggtagggggggaaggcgggttggttggtcactcaccgattgctggccgcgcggcggcgctaccaccacctcctcctcccgccgccgccgccgccgccatttcggccgggtcgatcgctcggtgcctcggtgacgacgtgaaaggggagaagaagattagagctgcgggaagaggagatggtggaggatttcgcggcggggctgctccgcgcggcggcgttaccacctcctcccgccgcagctgccgccgccgccgcctccattccggcggccgggagatcgctcggccatggcgtgaaaaggggagaggagacgagaagccgtaacgga
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| CDS seq | atggcggcggcggcggcggcgggaggaggaggtggtggtagcgccgccgcgcggccagcaatcggcaagatcactgatgctgcgtgcatctccagtgagagggacgctctgcttgctttcaaagccggtttcgctgatcctgctggaggggcgctgcgtttctggcaaggccaagactgctgcgcatggagtggggtgtcctgcagcaaaaagatcggcagtgttgtcagcctggatatcggccattatgatctcactttcagaggtgaaatcaactcatctctggctgttctgacacatctagtgtaccttaacctgagtggaaatgatttcggtggggtggccatcccagatttcataggctccttcgagaaactgaggtatcttgatctttcgcatgctggttttggagggacagttcctcctcggcttggtaatttatcaatgctcagccaccttgatttgagctcaccaagtcatacagttactgtcaaaagcttcgactgggtgtctcgcctcacttcactggtctatctagaccttagttggttgtatcttgctgcttcctctgattggttgcaggctacaaatacgcttcctttgcttaaagtcctctgcttgaatcatgcgtttcttcctgccacagacttgaatgctctttctcataccaacttcacagccattagggtacttgatctgaagagtaacaacttcagttcacgaatgccagattggatttcaaagctaagttctcttgcatatttggacttgtctagctgtgagctttcaggctcacttcccaggaaccttgggaacttgacatccctcagtttttttcgattacgagcgaacaaccttgaaggtgaaatacctggatccatgagtaggttgtgcaacctacgccacattgatttatctggaaaccatttctcaggagatattacaagacttgctaataccttgttcccctgcatgaaccagttgaagattcttgaccttgcactcaataatctaaccgggagtctgtctggttgggtcaggcacatagcaagtgtaactactcttgatcttagtgagaactcattatccggacgagtatcagatgatattggcaagttatcaaacttaacctacttagatctttcagccaattcatttcaaggaaatatgattaatagagagttgcccaaaagtttaaagcacatgaaagcgctggagttactcgacatgagttcgaaccaactggagggatgcattcctgatctgccatctagtgtgaaagtattggatctgtcaagtaaccacttatatggaccattgccacaaagcctgggtgccaaagaaatgtactatctatcactcaaagacaacttcctcagtggaagcatccctacatacctatgtgagatggtttggatggaacaggttcttctatcactaaacaacttcacaggtgtactcccaaattgctggaggaaagattcagcgctgagaattatagacttctcaaacaataacattcacggagaaatatcttcaaccatgggtcatctaacttcccttggatcattgttactccacaggaacaagttatctggtccactccccacctcactgaagctatgcaacagattaatctttcttgatctttctgaaaataatttgtctgggaccataccaacctggataggtgacagcctgcagtctctgattctcctcagtttaaggtccaacaacttttctggtaaaattcccgagctactatctcagcttcacgctcttcaaattttagatattgctgataacaatctatcaggccctgtacccaaatccttgggaaatttagcagccatgcagttaggcaggcacatgatacaacagcaatttagcaccatttcggacatccatttcatggtttatggtgcaagtggtgcagtcttgtatcggctgtatgcatacttatacttgaatagtctgcttgctggcaagcttcaatataatggaactgccttctatatcgatctctctggtaaccaattagcaggggagattcctattgaaattggatttctatctggactaacaggtttaaatttgtcaggaaatcacataagagggagcattccagaggagttgggaaacttaagaagtttagaagtgcttgatctctccaggaacgatctgtcaggcccaattccacagtgcttcctgtcattgtctggtttgagccgtctgaatttatcctacaatgacctttcaggagctataccatttggaaatggacttgaaacttttgcagaaagcacatattttggtaatgctggtctatgtgggcctccactgtcaagaagctgtttgtaccacaaaaggaagcataaactgaacttcgatttggagacatacttaagtgctctgttagggtttgcatttggattctgcattgtcttcgtcatcatgatacccaacatggttgcatga
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| Protein seq | MAAAAAAGGGGGGSAAARPAIGKITDAACISSERDALLAFKAGFADPAGGALRFWQGQDCCAWSGVSCSKKIGSVVSLDIGHYDLTFRGEINSSLAVLTHLVYLNLSGNDFGGVAIPDFIGSFEKLRYLDLSHAGFGGTVPPRLGNLSMLSHLDLSSPSHTVTVKSFDWVSRLTSLVYLDLSWLYLAASSDWLQATNTLPLLKVLCLNHAFLPATDLNALSHTNFTAIRVLDLKSNNFSSRMPDWISKLSSLAYLDLSSCELSGSLPRNLGNLTSLSFFRLRANNLEGEIPGSMSRLCNLRHIDLSGNHFSGDITRLANTLFPCMNQLKILDLALNNLTGSLSGWVRHIASVTTLDLSENSLSGRVSDDIGKLSNLTYLDLSANSFQGNMINRELPKSLKHMKALELLDMSSNQLEGCIPDLPSSVKVLDLSSNHLYGPLPQSLGAKEMYYLSLKDNFLSGSIPTYLCEMVWMEQVLLSLNNFTGVLPNCWRKDSALRIIDFSNNNIHGEISSTMGHLTSLGSLLLHRNKLSGPLPTSLKLCNRLIFLDLSENNLSGTIPTWIGDSLQSLILLSLRSNNFSGKIPELLSQLHALQILDIADNNLSGPVPKSLGNLAAMQLGRHMIQQQFSTISDIHFMVYGASGAVLYRLYAYLYLNSLLAGKLQYNGTAFYIDLSGNQLAGEIPIEIGFLSGLTGLNLSGNHIRGSIPEELGNLRSLEVLDLSRNDLSGPIPQCFLSLSGLSRLNLSYNDLSGAIPFGNGLETFAESTYFGNAGLCGPPLSRSCLYHKRKHKLNFDLETYLSALLGFAFGFCIVFVIMIPNMVA |
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| Function | Receptor-like protein 50 [UniProtKB/Swiss-Prot:Q93YT3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0002870 | OsLima_06g0002870.01 | Chr06 | 2173122 | 2177034 | - | NAM | ||
| CDS seq | atggcggcggcggcggcggcgggaggaggaggtggtggtagcgccgccgcgcggccagcaatcggcaagatcactgatgctgcgtgcatctccagtgagagggacgctctgcttgctttcaaagccggtttcgctgatcctgctggaggggcgctgcgtttctggcaaggccaagactgctgcgcatggagtggggtgtcctgcagcaaaaagatcggcagtgttgtcagcctggatatcggccattatgatctcactttcagaggtgaaatcaactcatctctggctgttctgacacatctagtgtaccttaacctgagtggaaatgatttcggtggggtggccatcccagatttcataggctccttcgagaaactgaggtatcttgatctttcgcatgctggttttggagggacagttcctcctcggcttggtaatttatcaatgctcagccaccttgatttgagctcaccaagtcatacagttactgtcaaaagcttcgactgggtgtctcgcctcacttcactggtctatctagaccttagttggttgtatcttgctgcttcctctgattggttgcaggctacaaatacgcttcctttgcttaaagtcctctgcttgaatcatgcgtttcttcctgccacagacttgaatgctctttctcataccaacttcacagccattagggtacttgatctgaagagtaacaacttcagttcacgaatgccagattggatttcaaagctaagttctcttgcatatttggacttgtctagctgtgagctttcaggctcacttcccaggaaccttgggaacttgacatccctcagtttttttcgattacgagcgaacaaccttgaaggtgaaatacctggatccatgagtaggttgtgcaacctacgccacattgatttatctggaaaccatttctcaggagatattacaagacttgctaataccttgttcccctgcatgaaccagttgaagattcttgaccttgcactcaataatctaaccgggagtctgtctggttgggtcaggcacatagcaagtgtaactactcttgatcttagtgagaactcattatccggacgagtatcagatgatattggcaagttatcaaacttaacctacttagatctttcagccaattcatttcaaggaaatatgattaatagagagttgcccaaaagtttaaagcacatgaaagcgctggagttactcgacatgagttcgaaccaactggagggatgcattcctgatctgccatctagtgtgaaagtattggatctgtcaagtaaccacttatatggaccattgccacaaagcctgggtgccaaagaaatgtactatctatcactcaaagacaacttcctcagtggaagcatccctacatacctatgtgagatggtttggatggaacaggttcttctatcactaaacaacttcacaggtgtactcccaaattgctggaggaaagattcagcgctgagaattatagacttctcaaacaataacattcacggagaaatatcttcaaccatgggtcatctaacttcccttggatcattgttactccacaggaacaagttatctggtccactccccacctcactgaagctatgcaacagattaatctttcttgatctttctgaaaataatttgtctgggaccataccaacctggataggtgacagcctgcagtctctgattctcctcagtttaaggtccaacaacttttctggtaaaattcccgagctactatctcagcttcacgctcttcaaattttagatattgctgataacaatctatcaggccctgtacccaaatccttgggaaatttagcagccatgcagttaggcaggcacatgatacaacagcaatttagcaccatttcggacatccatttcatggtttatggtgcaagtggtgcagtcttgtatcggctgtatgcatacttatacttgaatagtctgcttgctggcaagcttcaatataatggaactgccttctatatcgatctctctggtaaccaattagcaggggagattcctattgaaattggatttctatctggactaacaggtttaaatttgtcaggaaatcacataagagggagcattccagaggagttgggaaacttaagaagtttagaagtgcttgatctctccaggaacgatctgtcaggcccaattccacagtgcttcctgtcattgtctggtttgagccgtctgaatttatcctacaatgacctttcaggagctataccatttggaaatggacttgaaacttttgcagaaagcacatattttggtaatgctggtctatgtgggcctccactgtcaagaagctgtttgtaccacaaaaggaagcataaactgaacttcgatttggagacatacttaagtgctctgttagggtttgcatttggattctgcattgtcttcgtcatcatgatacccaacatggttgcatga
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| Protein seq | MAAAAAAGGGGGGSAAARPAIGKITDAACISSERDALLAFKAGFADPAGGALRFWQGQDCCAWSGVSCSKKIGSVVSLDIGHYDLTFRGEINSSLAVLTHLVYLNLSGNDFGGVAIPDFIGSFEKLRYLDLSHAGFGGTVPPRLGNLSMLSHLDLSSPSHTVTVKSFDWVSRLTSLVYLDLSWLYLAASSDWLQATNTLPLLKVLCLNHAFLPATDLNALSHTNFTAIRVLDLKSNNFSSRMPDWISKLSSLAYLDLSSCELSGSLPRNLGNLTSLSFFRLRANNLEGEIPGSMSRLCNLRHIDLSGNHFSGDITRLANTLFPCMNQLKILDLALNNLTGSLSGWVRHIASVTTLDLSENSLSGRVSDDIGKLSNLTYLDLSANSFQGNMINRELPKSLKHMKALELLDMSSNQLEGCIPDLPSSVKVLDLSSNHLYGPLPQSLGAKEMYYLSLKDNFLSGSIPTYLCEMVWMEQVLLSLNNFTGVLPNCWRKDSALRIIDFSNNNIHGEISSTMGHLTSLGSLLLHRNKLSGPLPTSLKLCNRLIFLDLSENNLSGTIPTWIGDSLQSLILLSLRSNNFSGKIPELLSQLHALQILDIADNNLSGPVPKSLGNLAAMQLGRHMIQQQFSTISDIHFMVYGASGAVLYRLYAYLYLNSLLAGKLQYNGTAFYIDLSGNQLAGEIPIEIGFLSGLTGLNLSGNHIRGSIPEELGNLRSLEVLDLSRNDLSGPIPQCFLSLSGLSRLNLSYNDLSGAIPFGNGLETFAESTYFGNAGLCGPPLSRSCLYHKRKHKLNFDLETYLSALLGFAFGFCIVFVIMIPNMVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0140300 | RBH | 0.0 | 0.0 | 0.552516 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g04840 | RBH | 0.0 | 0.0 | 0.131063 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0140300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0002940 | RBH | 0.0 | 0.0 | 0.989637 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0002870 | RBH | 0.0 | 0.0 | 0.397812 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0002810 | RBH | 0.0 | 0.0 | 0.620030 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0002790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0002790 | RBH | 0.0 | 0.000000 | 1.939979 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0033800 | RBH | 0.1726675 | 0.5068755 | 1.381308 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0002730 | RBH | 0.0 | 0.059231 | 0.186316 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0151000 | SBH | 3.943083 | 6.1207495 | 0.224874 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0002840 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0002730 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0002760 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0002740 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0002630 | RBH | 0.065399 | 0.327975 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G002680 | RBH | 0.000000 | 0.0 | 0.437185 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0002850 | RBH | 0.0 | 1.753021 | 0.696154 |
