Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0001410 | OGI:06002860 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:1216586-1218868 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgatgtccttcgtgtccaacatgacgatctcctacgccgaccagagcaacgagtcctccgtagtggccacctcggtcgtcatgttcatcctcgccgccgtcttcttcaacctcaacctcttcagcagcgtctccgacgtgagcgcggtgctcaaccccaccgtccgcctcttcctctccagcgcgctcaacctcttcctcccggtcatgtcctacctcttctccgaggccaagaaagccaccgtcgacaaatccatcttcgtcaacctcaagcaggggcagcaggccgacgacctcccgctgctggcgcgtgtcatcctaacgtggatgctcctcgtcgagctcctccgcaagaaggtggaggccatcctcatcaccaccggcatgcacgtgtactccagcctcatcagtcacgctagcagcgtcgcgtggctgggcaacctcgtcttcttcaacctccaggccgccggcaagaaggcgctgttcggcgtcctctgggtgctctgcgccgccaagctggtgcagcgcgtcgccatcaccgagattgggaagcgctccttcgcccatggcaagaacgcccgcctcatctcctcatacatgacgcagctaccaaagctccggcggcatgtcgtcgaggaggtggacgtcgacgtcggaaactgcggagcggtcaggttggagctgtgcaagtacgccgtgatgggagaagagaacatggtgctcaaggctggaccacacggctacgagctcgacctcggcctcgccacctccgacgccgccgtcgtcaccgtcgggaaaatctggcagaccaaagaacacccaaggctcaagaggctctgcctctccttcgctctcttcaagcttctgcgccgccggttcgagaacctgccgccggcgaccaagcaggagaccgacgagtgccgggagctcatcttggacggcatgtgcaaggatgcccatgccaccggcgacgtcccggcggaggtggcgttgttccaggtgctcaacgacgaggtgaacttcctgaccgagtactaccactccgtcctccccgtggtgcttgcgagcccctacttcttcctcgtcaactacctctgcttccccgtcgtcgtgttgggcctctgcgtcatgaccatcgtcctctgcggcaatggcagcgtcttgtacgccttcaagagcctaaccaacgacaactatgccgtctcctccggcatactctcgctgacgaaatgcctctggaaaaacgtcgtcaggtctccgccggtgttcttctccttcgtcgacgtctccatctgctatctcctcttcatcgtcgtcatctacgaggaggtgtgggagttcatcgtcttcctcctctccaactggttcgtcgtctcgctgctctgcaacttctccgccaatccgtggcgacgcgagagccccaccttccgcggctccgtccgctgcatcctctggctccgccgaaacctcagccactaccctagcctcatcaccatcaagcagttcaccgtcctgagcacgtgctgcctgtcgccgaggttgcccaccgccacgctgcccaggcatgcgaagctcgccatcctagaacgcttccgcggcggcgatcctctcagcaacggcggcgccgtgctgacgtcgatgggcggtaggcaccggcggttctcgcggctcgcgtgggcgtgccagagcggagccgtcgcggaggtgatcctcacctggcacatcgccaccagcctcctggagacaaagcagcagcatcagagtcccagtcggaggacggcagcgaggctgtccagatattgcgcctacctcgtcgcctaccgcccggagttgctgccggacgaccgggaaggcacggagcgcatctacaaggacctgaagaagggcatcaaggcggcgctcggcggcgcacgaggatactacttctcgtctgagcggagccggcacgagacgatccgtgcgatctcggccaagcttgcgctcccggaggacgccgacatgacggtgctccagaggggtgccgtgctgggaaaggagctggtggacgaagccggcgacggtgcggtggtggaggcggtgtgggagatgctggccgacgtgtgggtggagctcatcgtgtacgtgtcgccgtcgcgcgcggaggagcacgccaaggcgcacgaggcggcgctggtgcagggcagcgagctcgtgacactgctctgggtgctcgccacgcacaccggcatcacccgccccgacgaccaccaccacgacgaccatccggcgccgacatttgtgtag
More
|
||||||||||
| CDS seq | atgatgtccttcgtgtccaacatgacgatctcctacgccgaccagagcaacgagtcctccgtagtggccacctcggtcgtcatgttcatcctcgccgccgtcttcttcaacctcaacctcttcagcagcgtctccgacgtgagcgcggtgctcaaccccaccgtccgcctcttcctctccagcgcgctcaacctcttcctcccggtcatgtcctacctcttctccgaggccaagaaagccaccgtcgacaaatccatcttcgtcaacctcaagcaggggcagcaggccgacgacctcccgctgctggcgcgtgtcatcctaacgtggatgctcctcgtcgagctcctccgcaagaaggtggaggccatcctcatcaccaccggcatgcacgtgtactccagcctcatcagtcacgctagcagcgtcgcgtggctgggcaacctcgtcttcttcaacctccaggccgccggcaagaaggcgctgttcggcgtcctctgggtgctctgcgccgccaagctggtgcagcgcgtcgccatcaccgagattgggaagcgctccttcgcccatggcaagaacgcccgcctcatctcctcatacatgacgcagctaccaaagctccggcggcatgtcgtcgaggaggtggacgtcgacgtcggaaactgcggagcggtcaggttggagctgtgcaagtacgccgtgatgggagaagagaacatggtgctcaaggctggaccacacggctacgagctcgacctcggcctcgccacctccgacgccgccgtcgtcaccgtcgggaaaatctggcagaccaaagaacacccaaggctcaagaggctctgcctctccttcgctctcttcaagcttctgcgccgccggttcgagaacctgccgccggcgaccaagcaggagaccgacgagtgccgggagctcatcttggacggcatgtgcaaggatgcccatgccaccggcgacgtcccggcggaggtggcgttgttccaggtgctcaacgacgaggtgaacttcctgaccgagtactaccactccgtcctccccgtggtgcttgcgagcccctacttcttcctcgtcaactacctctgcttccccgtcgtcgtgttgggcctctgcgtcatgaccatcgtcctctgcggcaatggcagcgtcttgtacgccttcaagagcctaaccaacgacaactatgccgtctcctccggcatactctcgctgacgaaatgcctctggaaaaacgtcgtcaggtctccgccggtgttcttctccttcgtcgacgtctccatctgctatctcctcttcatcgtcgtcatctacgaggaggtgtgggagttcatcgtcttcctcctctccaactggttcgtcgtctcgctgctctgcaacttctccgccaatccgtggcgacgcgagagccccaccttccgcggctccgtccgctgcatcctctggctccgccgaaacctcagccactaccctagcctcatcaccatcaagcagttcaccgtcctgagcacgtgctgcctgtcgccgaggttgcccaccgccacgctgcccaggcatgcgaagctcgccatcctagaacgcttccgcggcggcgatcctctcagcaacggcggcgccgtgctgacgtcgatgggcggtaggcaccggcggttctcgcggctcgcgtgggcgtgccagagcggagccgtcgcggaggtgatcctcacctggcacatcgccaccagcctcctggagacaaagcagcagcatcagagtcccagtcggaggacggcagcgaggctgtccagatattgcgcctacctcgtcgcctaccgcccggagttgctgccggacgaccgggaaggcacggagcgcatctacaaggacctgaagaagggcatcaaggcggcgctcggcggcgcacgaggatactacttctcgtctgagcggagccggcacgagacgatccgtgcgatctcggccaagcttgcgctcccggaggacgccgacatgacggtgctccagaggggtgccgtgctgggaaaggagctggtggacgaagccggcgacggtgcggtggtggaggcggtgtgggagatgctggccgacgtgtgggtggagctcatcgtgtacgtgtcgccgtcgcgcgcggaggagcacgccaaggcgcacgaggcggcgctggtgcagggcagcgagctcgtgacactgctctgggtgctcgccacgcacaccggcatcacccgccccgacgaccaccaccacgacgaccatccggcgccgacatttgtgtag
More
|
||||||||||
| Protein seq | MMSFVSNMTISYADQSNESSVVATSVVMFILAAVFFNLNLFSSVSDVSAVLNPTVRLFLSSALNLFLPVMSYLFSEAKKATVDKSIFVNLKQGQQADDLPLLARVILTWMLLVELLRKKVEAILITTGMHVYSSLISHASSVAWLGNLVFFNLQAAGKKALFGVLWVLCAAKLVQRVAITEIGKRSFAHGKNARLISSYMTQLPKLRRHVVEEVDVDVGNCGAVRLELCKYAVMGEENMVLKAGPHGYELDLGLATSDAAVVTVGKIWQTKEHPRLKRLCLSFALFKLLRRRFENLPPATKQETDECRELILDGMCKDAHATGDVPAEVALFQVLNDEVNFLTEYYHSVLPVVLASPYFFLVNYLCFPVVVLGLCVMTIVLCGNGSVLYAFKSLTNDNYAVSSGILSLTKCLWKNVVRSPPVFFSFVDVSICYLLFIVVIYEEVWEFIVFLLSNWFVVSLLCNFSANPWRRESPTFRGSVRCILWLRRNLSHYPSLITIKQFTVLSTCCLSPRLPTATLPRHAKLAILERFRGGDPLSNGGAVLTSMGGRHRRFSRLAWACQSGAVAEVILTWHIATSLLETKQQHQSPSRRTAARLSRYCAYLVAYRPELLPDDREGTERIYKDLKKGIKAALGGARGYYFSSERSRHETIRAISAKLALPEDADMTVLQRGAVLGKELVDEAGDGAVVEAVWEMLADVWVELIVYVSPSRAEEHAKAHEAALVQGSELVTLLWVLATHTGITRPDDHHHDDHPAPTFV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0001410 | OsLima_06g0001410.01 | Chr06 | 1216586 | 1218868 | + | NAM | ||
| CDS seq | atgatgtccttcgtgtccaacatgacgatctcctacgccgaccagagcaacgagtcctccgtagtggccacctcggtcgtcatgttcatcctcgccgccgtcttcttcaacctcaacctcttcagcagcgtctccgacgtgagcgcggtgctcaaccccaccgtccgcctcttcctctccagcgcgctcaacctcttcctcccggtcatgtcctacctcttctccgaggccaagaaagccaccgtcgacaaatccatcttcgtcaacctcaagcaggggcagcaggccgacgacctcccgctgctggcgcgtgtcatcctaacgtggatgctcctcgtcgagctcctccgcaagaaggtggaggccatcctcatcaccaccggcatgcacgtgtactccagcctcatcagtcacgctagcagcgtcgcgtggctgggcaacctcgtcttcttcaacctccaggccgccggcaagaaggcgctgttcggcgtcctctgggtgctctgcgccgccaagctggtgcagcgcgtcgccatcaccgagattgggaagcgctccttcgcccatggcaagaacgcccgcctcatctcctcatacatgacgcagctaccaaagctccggcggcatgtcgtcgaggaggtggacgtcgacgtcggaaactgcggagcggtcaggttggagctgtgcaagtacgccgtgatgggagaagagaacatggtgctcaaggctggaccacacggctacgagctcgacctcggcctcgccacctccgacgccgccgtcgtcaccgtcgggaaaatctggcagaccaaagaacacccaaggctcaagaggctctgcctctccttcgctctcttcaagcttctgcgccgccggttcgagaacctgccgccggcgaccaagcaggagaccgacgagtgccgggagctcatcttggacggcatgtgcaaggatgcccatgccaccggcgacgtcccggcggaggtggcgttgttccaggtgctcaacgacgaggtgaacttcctgaccgagtactaccactccgtcctccccgtggtgcttgcgagcccctacttcttcctcgtcaactacctctgcttccccgtcgtcgtgttgggcctctgcgtcatgaccatcgtcctctgcggcaatggcagcgtcttgtacgccttcaagagcctaaccaacgacaactatgccgtctcctccggcatactctcgctgacgaaatgcctctggaaaaacgtcgtcaggtctccgccggtgttcttctccttcgtcgacgtctccatctgctatctcctcttcatcgtcgtcatctacgaggaggtgtgggagttcatcgtcttcctcctctccaactggttcgtcgtctcgctgctctgcaacttctccgccaatccgtggcgacgcgagagccccaccttccgcggctccgtccgctgcatcctctggctccgccgaaacctcagccactaccctagcctcatcaccatcaagcagttcaccgtcctgagcacgtgctgcctgtcgccgaggttgcccaccgccacgctgcccaggcatgcgaagctcgccatcctagaacgcttccgcggcggcgatcctctcagcaacggcggcgccgtgctgacgtcgatgggcggtaggcaccggcggttctcgcggctcgcgtgggcgtgccagagcggagccgtcgcggaggtgatcctcacctggcacatcgccaccagcctcctggagacaaagcagcagcatcagagtcccagtcggaggacggcagcgaggctgtccagatattgcgcctacctcgtcgcctaccgcccggagttgctgccggacgaccgggaaggcacggagcgcatctacaaggacctgaagaagggcatcaaggcggcgctcggcggcgcacgaggatactacttctcgtctgagcggagccggcacgagacgatccgtgcgatctcggccaagcttgcgctcccggaggacgccgacatgacggtgctccagaggggtgccgtgctgggaaaggagctggtggacgaagccggcgacggtgcggtggtggaggcggtgtgggagatgctggccgacgtgtgggtggagctcatcgtgtacgtgtcgccgtcgcgcgcggaggagcacgccaaggcgcacgaggcggcgctggtgcagggcagcgagctcgtgacactgctctgggtgctcgccacgcacaccggcatcacccgccccgacgaccaccaccacgacgaccatccggcgccgacatttgtgtag
More
|
|||||||
| Protein seq | MMSFVSNMTISYADQSNESSVVATSVVMFILAAVFFNLNLFSSVSDVSAVLNPTVRLFLSSALNLFLPVMSYLFSEAKKATVDKSIFVNLKQGQQADDLPLLARVILTWMLLVELLRKKVEAILITTGMHVYSSLISHASSVAWLGNLVFFNLQAAGKKALFGVLWVLCAAKLVQRVAITEIGKRSFAHGKNARLISSYMTQLPKLRRHVVEEVDVDVGNCGAVRLELCKYAVMGEENMVLKAGPHGYELDLGLATSDAAVVTVGKIWQTKEHPRLKRLCLSFALFKLLRRRFENLPPATKQETDECRELILDGMCKDAHATGDVPAEVALFQVLNDEVNFLTEYYHSVLPVVLASPYFFLVNYLCFPVVVLGLCVMTIVLCGNGSVLYAFKSLTNDNYAVSSGILSLTKCLWKNVVRSPPVFFSFVDVSICYLLFIVVIYEEVWEFIVFLLSNWFVVSLLCNFSANPWRRESPTFRGSVRCILWLRRNLSHYPSLITIKQFTVLSTCCLSPRLPTATLPRHAKLAILERFRGGDPLSNGGAVLTSMGGRHRRFSRLAWACQSGAVAEVILTWHIATSLLETKQQHQSPSRRTAARLSRYCAYLVAYRPELLPDDREGTERIYKDLKKGIKAALGGARGYYFSSERSRHETIRAISAKLALPEDADMTVLQRGAVLGKELVDEAGDGAVVEAVWEMLADVWVELIVYVSPSRAEEHAKAHEAALVQGSELVTLLWVLATHTGITRPDDHHHDDHPAPTFV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.120037 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0120200 | RBH | 0.568855 | 0.194996 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02960 | RBH | 0.384689 | 0.131151 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0120200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001480 | RBH | 0.178305 | 0.0 | 2.026215 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001430 | RBH | 0.0 | 0.0 | 0.128645 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001390 | RBH | 0.828050 | 0.0 | 1.041442 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0001390 | RBH | 0.028660 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0001400 | SBH | 0.000000 | 0.0 | 5.009130 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0017500 | RBH | 1.8304925 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001400 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0019200 | SBH | 1.303677 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001410 | RBH | 0.358492 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001370 | RBH | 0.949890 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0001420 | SBH | 0.357066 | 0.0 | 0.198200 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001280 | SBH | 0.313714 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001340 | RBH | 0.184886 | 0.0 | 0.469714 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001410 | RBH | 0.104084 | 0.000000 | 0.195810 |
