Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0000560 | OGI:06001110 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:358516-364434 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggtttgggatgctttcctttgcgaggaaaatcaggtaacccaattcaaggccccccaaatcattcattctttcaatcgccgccgctttcttcttctacttccctatccgatccgtacgtctcctctcgtctgcagccagcagcgacatagatcgatctgttcccggccggcgagccggagtagatctctcgcataccctgcacgcacgtactgcttatggcggcggcgggagggcagcagaggcggcgcggcgggcggcgagagatgcggcggatcgaggacacgacgaggcggcaggtgacgttctcgaagcggcggaaggggcttctgaagaaggcgtcggagctgtcggtgctgtgcgacgcggaggtggcgctgctcgtcttctccccgcgcggccgcttcttccacttcgcctccgctccctcgtacgccaccatcccgccctcctccttcttccctactactgtactagcttattaattccctaattttttactaaattacctcatgatatttttcatctttctaatctgtttttcacccttattattcccctagctagttcgatccgtacgtgccggatttaaagatggtgtcacgagctactacatgaaatatactgtttctgcttctctactagctggagtagcagcgtactactagctttaatttgatatcagatggatttgatagatcgatccattttattttctcacctccacactgtaaattgcgtcatacttcctccgtcctaaaaaaaaaggtaaactatgggtttacgtgcccaactttgtcttatatgaaaatttttttataattcgtattttcattgttgttagatgataaaacatgattaatattttatgcgtgacttgtctttttaatttttttcataattttttcaaataagacgaacggtcaaactttggtcacgaaaaccagggtttgtctttttttaggatggagggagtatatagcttataaaatctcagaattatatatgcaatctacaactactatatatggagtagctactatttcctagtagtactatatattgaattgatatgtcattcatttctatcacacattgctttttcaattaatacaccaaaccaccaccacatttacatatgcataggcattattttatttttttctcattttctatatatccatcggccataaatatacagacacatgtacacgtaattctgttttttgtgacaagagagatcaattaactaattttatgttttataattataactgtgcaaacaaaatataatgcatgctaacaccaataataatgtaataccacacgttttatgccatataatgtttcacaaaaccatagccttaaccaaattacattactacttgttgatgtcaaattagaggtatagcgattacacaaagcattcatataaaaaaaatgagggcaaattaaatccattgcaaattgtttgagctgcggcagatcacaagctatgaaaaaaaatataatgaacaaatacgccaaaactaattttatgaatataaattctatatctgtgttattattagtggtttaaaacccattgctgaaaaacatattaagatgaaataactttaaaattaactctataattaagttttaaaattcaaaatttggctatgactaataagcacgatcgatgaagagactacataattaacatgaactatttgtcattataagatcatcaaattgttggcatgtcagccttcttgcatggcccaaagcatcatactttcatgtcaaccctttttcgtgtgaaacaaggaggtaagtcaaatataggtgctaattaaacatgcatgactcattccttgcaggggtgtatgggggaacttttggtcatatatagagtgttttagatagtatatagagagaatctactcagtaccactgagtttgtcacccttctacaatctaccactgacattgtaaagttctataatgtaccaccgtgttttgtttaacctctaaaatgtgccatcaccgtctagttaacctctgttagagctttaaaaagacctatttgcccctagcccattctacaggcatggctacctccttgttgtcatcaaggagggccagctccttgccggcggtgggcgaccggttgcagcaacgctggggacggcggttgcagcggcgccggggacgacggtgatggggacggaagcgctaggacaccggcagtggaggggcggtgggcggttggacgatgcggcggtgctgcaggcaacgaagccaggacgccggcggtggaggtgtggttggcagagcatggggagggcggcggcgctgcgggcgacggcgccagtatgccgacggtgaaggcgtggtgggcagaggacggggagggcgccggcgctgcgggcgacgggtagggcggcggcgctgcggatgacggggagggtggcagcgctgtgggcgatgacgccaggacaccgacgatggaggcattgtgagcggaggatggggagggcggcggcgcggcgggcgacggcgccaggacgccggcggtggaggcgtagtgggtggacgatggggaggatggcggcacagcaagcgacggcgccaggacatccgcggtggtggcgtggtggtgaacgacggggaggacggcggcgcggcgggcgacggggtcaggatgtccgcggtggaggcttggtgggcggacgaagggaagggcggcggcgctgcgggcgacggcgccaagatgcttgcgatggaggcatggtggggggcggcgccaggacgccggcggtggagtcgtggtggccggatgacggggagggcggcgcctggtcaccggcggtgaggattcgtgaaatttgggctaggttttagtcaattagtcaaagggcatttcaggcattaagagaaaaatcaacgctacaaacggagggcaactaacggttcgctgacggcgatggtacgcagtagagattgaacaaaaaacgatggtatattatagaactttacaaagtcaatgatagattgtagaagggtgacaaactcaatggcactgagtggattttctctagtatatatcagagcacaattaaccgtcgctacaagctagccatattcttgtggccttttaattcccacgcactgagataggcgtggtatgcatgtttatatgctgctgaggacacatcaaaccggccttaaaatggtgtaagtatgatgcccaagccgtgtagtatcatatttgcttgtaagtttaacatgatacactagctacctaacatactacactacatcagagagggccaattcagaaactatatgtactattatatgtatgtcatatatagatctagatcaacgcttgatatatcatagactctaaggacaactatttgcctatgaagaaatatcactatatattaaaccgtttgacaaagggaacaatctaagctccttgcaattggaaacactatatgtggtagtaagctgatagcctatttaccatagaaaacatttaattattagaaatggtctatggttagtgaagacattatacagacagtttacaaaacatgtcataaatatttcatgtttagggaaagtttctgtcaaacttttaaaactttaactattaatatatactcccttcgtccaaaaaaatgaatctagaactaaatgtgatacattttaatacaacgaatctggacagagatatgtccagattcatagtagtaggatgtgtcatatccagtcctacattgtttttttatgggacggagagagtattttatattagaatatgtttacaaagtagtattattatgacattactttgcaaggcaaatcctcctcttttttcttaaaacaaaacaaatataagcattacatctgagaaattatgtcaaagtttcaaatattgtttgaccaaatcttatcctaaatgtcaaatatttctgacaggaggaagtatcaatttatttcatgtcttatattaattgatgttttttagtatactagtttcaattaatttgttatcagataaattaaatgtcaatggtggatccttaattcatcatctataatgcttcctagaattaatggacatccatttacaatttaagtttgttgagaatagtcagtttcatgtacatatgtagtggtatctattcttgctgaaatttgtattgtttttattcgtttctgataccggtatcttattaggcacaaattaacgtatataagtaccgctgctatttttagtgaaaacattactttggtctgatatccagtagtagtacgctcagttacttgattatgaacacatatatattatctgtatttccatgtaataaactatttttcacaactctggaattcttttttcagcctggaggggacaatcgaccgctacattagccacacccaagaggcgcctgcaaacaagaagccccgtgaacttactgtaaaggtccttgtggatacattctgaattcctcatatctatcaaccatgatcatatactgttaggatcgatgacgataatgtgtgcaacttgcattaaTttttttttcttcacaactactgcatacagaatatgaaatctcaatccgaaaccttagcaatggagattgacacagttgaggcatacacaaggtaactataatagcaatgattattccttatcagaatatatatgaaatcatgcagactggcaattactatatgttcctaattattagggtggggaaattcacatgactagatgaaaatgatttttcacgtaggaagatgcagggcgaaaacctggaatcatgctcgttgcaagaactgcatggcctggagatgcagatggagaagagcctaagcagcatccgtttacaaaaggcaagcaaatggtcgcaatgtgctatctatgttgttgctgttgtgaatatctctatgatatatgcattttgatcagatttacataaatatctttcttgttgtccgtcaacattgcagcaaaagaagctgatggataagatttcacagctacaacaacaggtatgcacttatgtatctgaatataatatatatcaaagcatggctgacaagaattattgttctgaaagaggatttttgcataacttgttagtaatacatcagtatgattagatggaaacacttgttcgcctcaacaagccgtctcttcctggagtgtactgctttacaaaagatgttgatacaaatacaaatctcaaaagattatctatatatccatgtgtgattaactgacgaaactgaacatgcaggagaagattctgtcggaggagaacgcactgctcctcgatcaggtatcattaaaaaactcatcatcaaccacacgcctatttactgcacctactagctgccggattaatctgccaataatgtcactgacatgtggggcaaaaggcgctatctatccaatgcaacttacagtgaccggtgttaatatccatctatacatgtcagcttttgcatgatgatgaatcttttcttcttgttcgttcttgtttgtggagggcaaggtgcaacatgctccaatcggggctccagcgcgcgagatgaatcagaaccagcatgtccaggatattgatgttgacactgagctggtcattggaagacggtgaaaatattcagattttacagaagtggttgtggaaacagttcacagaagagaagtgaatgtgttgatgaggatcaacttgttgactgagcgagttatacacaatttgtttgtagcaagttgctaaatttatttgtcgatattatataatcttgctatgaggagaaggtagtggcgcctatacatgcagcattgtattcaggcttgtgtttgaccaacagacatgctgtgcagttcggatcggatatacataaaccaatc
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| CDS seq | atggcggcggcgggagggcagcagaggcggcgcggcgggcggcgagagatgcggcggatcgaggacacgacgaggcggcaggtgacgttctcgaagcggcggaaggggcttctgaagaaggcgtcggagctgtcggtgctgtgcgacgcggaggtggcgctgctcgtcttctccccgcgcggccgcttcttccacttcgcctccgctccctccaacgctggggacggcggttgcagcggcgccggggacgacggtgatggggacggaagcgctaggacaccggcagtggaggggcggtgggcggttggacgatgcggcggtgctgcaggcaacgaagccaggacgccggcggtggaggtgtggttggcagagcatggggagggcggcggcgctgcgggcgacggcgccagtatgccgacggacaccgacgatggaggcattgtgagcggaggatggggagggcggcggcgcggcgggcgacggcgccaggacgccggcggtggaggcgtagtgggtggacgatggggaggatggcggcacagcaagcgacggcgccaggacatccgcggtggtggcgtggtggtgaacgacggggaggacggcggcgcggcgggcgacggggtcaggatgtccgcggtggaggcttggtgggcggacgaagggaagggcggcggcgctgcgggcgacggcgccaagatgcttgcgatggaggcatgcctggaggggacaatcgaccgctacattagccacacccaagaggcgcctgcaaacaagaagccccgtgaacttactgtaaagaatatgaaatctcaatccgaaaccttagcaatggagattgacacagttgaggcatacacaaggaagatgcagggcgaaaacctggaatcatgctcgttgcaagaactgcatggcctggagatgcagatggagaagagcctaagcagcatccgtttacaaaaggcaagcaaatggtcgcaatgtgctatctatgttgttgctgttcaaaagaagctgatggataagatttcacagctacaacaacaggagaagattctgtcggaggagaacgcactgctcctcgatcagggcaaggtgcaacatgctccaatcggggctccagcgcgcgagatgaatcagaaccagcatgtccaggatattgatgttgacactgagctggtcattggaagacggtga
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| Protein seq | MAAAGGQQRRRGGRREMRRIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFASAPSNAGDGGCSGAGDDGDGDGSARTPAVEGRWAVGRCGGAAGNEARTPAVEVWLAEHGEGGGAAGDGASMPTDTDDGGIVSGGWGGRRRGGRRRQDAGGGGVVGGRWGGWRHSKRRRQDIRGGGVVVNDGEDGGAAGDGVRMSAVEAWWADEGKGGGAAGDGAKMLAMEACLEGTIDRYISHTQEAPANKKPRELTVKNMKSQSETLAMEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQKKLMDKISQLQQQEKILSEENALLLDQGKVQHAPIGAPAREMNQNQHVQDIDVDTELVIGRR |
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| Function | MADS-box transcription factor 56 [UniProtKB/Swiss-Prot:A2Z9Q7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0000560 | OsLima_06g0000560.01 | Chr06 | 358516 | 364434 | + | NAM | ||
| CDS seq | atggcggcggcgggagggcagcagaggcggcgcggcgggcggcgagagatgcggcggatcgaggacacgacgaggcggcaggtgacgttctcgaagcggcggaaggggcttctgaagaaggcgtcggagctgtcggtgctgtgcgacgcggaggtggcgctgctcgtcttctccccgcgcggccgcttcttccacttcgcctccgctccctccaacgctggggacggcggttgcagcggcgccggggacgacggtgatggggacggaagcgctaggacaccggcagtggaggggcggtgggcggttggacgatgcggcggtgctgcaggcaacgaagccaggacgccggcggtggaggtgtggttggcagagcatggggagggcggcggcgctgcgggcgacggcgccagtatgccgacggacaccgacgatggaggcattgtgagcggaggatggggagggcggcggcgcggcgggcgacggcgccaggacgccggcggtggaggcgtagtgggtggacgatggggaggatggcggcacagcaagcgacggcgccaggacatccgcggtggtggcgtggtggtgaacgacggggaggacggcggcgcggcgggcgacggggtcaggatgtccgcggtggaggcttggtgggcggacgaagggaagggcggcggcgctgcgggcgacggcgccaagatgcttgcgatggaggcatgcctggaggggacaatcgaccgctacattagccacacccaagaggcgcctgcaaacaagaagccccgtgaacttactgtaaagaatatgaaatctcaatccgaaaccttagcaatggagattgacacagttgaggcatacacaaggaagatgcagggcgaaaacctggaatcatgctcgttgcaagaactgcatggcctggagatgcagatggagaagagcctaagcagcatccgtttacaaaaggcaagcaaatggtcgcaatgtgctatctatgttgttgctgttcaaaagaagctgatggataagatttcacagctacaacaacaggagaagattctgtcggaggagaacgcactgctcctcgatcagggcaaggtgcaacatgctccaatcggggctccagcgcgcgagatgaatcagaaccagcatgtccaggatattgatgttgacactgagctggtcattggaagacggtga
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| Protein seq | MAAAGGQQRRRGGRREMRRIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFASAPSNAGDGGCSGAGDDGDGDGSARTPAVEGRWAVGRCGGAAGNEARTPAVEVWLAEHGEGGGAAGDGASMPTDTDDGGIVSGGWGGRRRGGRRRQDAGGGGVVGGRWGGWRHSKRRRQDIRGGGVVVNDGEDGGAAGDGVRMSAVEAWWADEGKGGGAAGDGAKMLAMEACLEGTIDRYISHTQEAPANKKPRELTVKNMKSQSETLAMEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKWSQCAIYVVAVQKKLMDKISQLQQQEKILSEENALLLDQGKVQHAPIGAPAREMNQNQHVQDIDVDTELVIGRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0108500 | RBH | 0.039082 | 0.741487 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g01890 | RBH | 0.026378 | 0.579036 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0108500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000600 | RBH | 0.0 | 10.686811 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000600 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000580 | RBH | 0.000000 | 7.282817 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000580 | RBH | 0.0 | 0.305878 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000560 | RBH | 0.000000 | 4.107549 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0006900 | RBH | 0.1234025 | 0 | 0.5144115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000530 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0007200 | RBH | 0.2202695 | 0 | 0.2273105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0000370 | SBH | 1.041391 | 0.541518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000570 | RBH | 0.0 | 2.558357 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000560 | RBH | 0.430864 | 0.239738 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000530 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000540 | RBH | 0.0 | 3.239301 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000550 | RBH | 0.303285 | 0.0 | 0.0 |
