Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0000600 | OGI:06001110 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:519078-521278 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggcggcgggagggcagcagaggcggcgcggcgggcggcgagagatgcggcggatcgaggacacgacgaggcggcaggtgacgttctcgaagcggcggaaggggcttctgaagaaggcgtcggagctgtcggtgctgtgcgacgcggaggtggcgctgctcgtcttctccccgcgcggccgcttcttccacttcgcctccgctccctcgtacgccaccatcccgccctcctccttcttccctactactgtactagcttattaattccctaatttattactaaattacctcatgatatttttcatctttctaatctgtttttcacccttattattcccctagctagttcgatccgtacgtgccggatttaaagaaggtgtcacgagctactacatgaaatatactgtttctgcttctctactagctggtgtagcagcgtactactagctttaatttgatatcagatggatttgatagatcgatccattttattttctcacctccacactgtaaattgcgtcatacttcctccgtcctaaaaaatggtaaactatagttttacgtgcccaacttcgtcttatatgaaattttttttataattcgtattttcattgttgttagatgataaaacatgattaatattttatgcgcgacttgtctttttaatttttttcataattttttcaaataagacgaacggtcaaacgttggtcacggaaaccagggtttgtcTtttttttaggacggagggagtatatagcttataaaatctcagaattatatatgcaatctacaactactatatatggagtagctactatttcctagtagtactatatattgaattgatatgtcattcatttctatcacacattgctttttcaattaatacaccaaaccaccaccacatttacatatgcataggcattatttttttTTCtcattttctatatatccatcggccataaatatacagacacatgtacacgtaattctgttttttgtgacaagagagatcaattaactaattttctgTTTTataattataactgtgcaaacaaaatataatgcatgctaacaccaataataatgtaataccacacgttttatgccatataatgtttcacaaaaccatagccttaaccaaattacattactacttgttgatgtcaaattagaggtatagcgattacacaaagcattcatatAaaaaaaatgagggcaaattaaatccattgcaaattgtttgagctgcggcagatcacaagctatgAaaaaaaatataatgaacaaatacgccaaaactaattttatgaatataaattctatatctgtgttattattagtggtttaaaacccattgctgAaaaacagattaagatgaaataactttaaaattaactctataattaagttttaaaattcaaaatttggctatgactaataagcacgatcgatgaagagactacataattaacatgaactatttgtcattataagatcatcaaattgttggcatgtcagccttcttgcatggcccaaagcatcatactttcatgtcaaccctttttcgtgtgaaacaaggaggtaagtcaaatataggtgctaattaaacatgcatgactcattccttgcaggggtgtatgggggaacttttggtcatatatagagtgttttagatagtatatagagagaatccactcagtaccactgagtttgtcacccttctacaaTctaccactgataTtGtAaagttctataatgtaccaccgtgttttgtttaacctctaaaatgtgccatcaccgtctagttaacctctgttagagctctaaaaagacctatttgcccctagcccattctacaggcatggctacctccttgttgtcatcaaggagggccagctccttgccggcggtgggcgaccggttgcagcaacgctggggacggcggttgcagcggcgccggggacgatggtgatggggacggaagcgctaggacaccggcagtggaggggcggtgggcggttggacgaggcggcggtgctgcaggcaacgaagccaggacgccggcggtggaggtgtggttggcagagcatgggaagggcggcggcgctgcaggcgacggcgccagtacgccgacggtgaaggcgtggtgggcagaggacggggagggcgccagcgctgcgggcgacgggtag
More
|
||||||||||
| CDS seq | atggcggcggcgggagggcagcagaggcggcgcggcgggcggcgagagatgcggcggatcgaggacacgacgaggcggcaggtgacgttctcgaagcggcggaaggggcttctgaagaaggcgtcggagctgtcggtgctgtgcgacgcggaggtggcgctgctcgtcttctccccgcgcggccgcttcttccacttcgcctccgctccctccaacgctggggacggcggttgcagcggcgccggggacgatggtgatggggacggaagcgctaggacaccggcagtggaggggcggtgggcggttggacgaggcggcggtgctgcaggcaacgaagccaggacgccggcggtggaggtgtggttggcagagcatgggaagggcggcggcgctgcaggcgacggcgccagtacgccgacggtgaaggcgtggtgggcagaggacggggagggcgccagcgctgcgggcgacgggtag
More
|
||||||||||
| Protein seq | MAAAGGQQRRRGGRREMRRIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFASAPSNAGDGGCSGAGDDGDGDGSARTPAVEGRWAVGRGGGAAGNEARTPAVEVWLAEHGKGGGAAGDGASTPTVKAWWAEDGEGASAAGDG |
||||||||||
| Function | MADS-box transcription factor 56 [UniProtKB/Swiss-Prot:P0C5B2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0000600 | OsKeNa_06g0000600.01 | Chr06 | 519078 | 521278 | + | NAM | ||
| CDS seq | atggcggcggcgggagggcagcagaggcggcgcggcgggcggcgagagatgcggcggatcgaggacacgacgaggcggcaggtgacgttctcgaagcggcggaaggggcttctgaagaaggcgtcggagctgtcggtgctgtgcgacgcggaggtggcgctgctcgtcttctccccgcgcggccgcttcttccacttcgcctccgctccctccaacgctggggacggcggttgcagcggcgccggggacgatggtgatggggacggaagcgctaggacaccggcagtggaggggcggtgggcggttggacgaggcggcggtgctgcaggcaacgaagccaggacgccggcggtggaggtgtggttggcagagcatgggaagggcggcggcgctgcaggcgacggcgccagtacgccgacggtgaaggcgtggtgggcagaggacggggagggcgccagcgctgcgggcgacgggtag
More
|
|||||||
| Protein seq | MAAAGGQQRRRGGRREMRRIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFASAPSNAGDGGCSGAGDDGDGDGSARTPAVEGRWAVGRGGGAAGNEARTPAVEVWLAEHGKGGGAAGDGASTPTVKAWWAEDGEGASAAGDG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0108500 | SBH | 0.039082 | 0.741487 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g01890 | SBH | 0.026378 | 0.579036 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0108500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0016140 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0000400 | SBH | 0.980628 | 7.674123 | 2.789175 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0016080 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0008030 | SBH | 0.0 | 0.951396 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000560 | RBH | 0.000000 | 4.107549 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0006900 | RBH | 0.1234025 | 0 | 0.5144115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0015720 | SBH | 0.0 | 0.576709 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0240100 | SBH | 0 | 0.104043 | 0.095212 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000560 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0016050 | SBH | 0.0 | 10.800062 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000570 | RBH | 0.0 | 2.558357 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000560 | RBH | 0.430864 | 0.239738 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0015860 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G015840 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000550 | RBH | 0.303285 | 0.0 | 0.0 |
