Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0028230 | OGI:05078930 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:30220160-30224268 | ||||||||
| Gene Symbol | CDPK15, OsCDPK15, OsCPK15 | ||||||||||
| DNA seq | caaagagttcattgccaaattcttcttctggcaaagaaaagtaatcaaatttcgaagcatacatcatcagttaaattcagcttcaccagaaaagcgttatcttgccttgcctgatatgatcagtagaaactgttttacagagctctttttatcaagagacagaaaacatatggccagaaagcacaagcatacatacacaaacgcaccacacccacttcagagagctatccaccatgatacataacgagtccaatatgccttgcgtatacttcattgaattccgccgatacgaactgctcttgtaacatttacaaagataatgctcacttccctaagatggaaccatatagaatttgtgaaaggaaaaaaacttcacaataactgtaggaaaggcttaaaacatccgccgtcgatttggaacaatctcagggctgttgttcttcatcatggcaacaaactcctggtagttaattcttccatcctaagcagtaagtcaggacacagtatttagtaggaaatccatgcagttcccgttttaatgttcacTtttgaagaatagcatcagcaattttcagttattcacccacatcatgtattcatgttggtggaagtatattgcttagagaaggaatgatttctcgatagctaacctttttatttatctaacaggaactcgattactagagagcaggatggatcaaagttcactagcttacatagtttagtaatatagttagatttaccctatgaaaattataattagccagcatccatgatcttagagatggctgagcaacattcagcatacttgAaaaccaaatctcctccaatgttttcaagatagtcaatgtaatcaattcgattatcctgatttaaaggccgcaggaatgattattttcatattctaaacgttgatgacatatcaaaaagtaatcactggagttttctaggtatttagtggagtgactcacatggtctgtatccacttcagcaattatttctttaattgtcgcttcatcacccatgtcgtactttgtcagagcttcttccaattcatcgactgttatgaacctgtacagaaacaagcaaacaacaaactagttaatccaaaagatcgaacctatcaaaatgattttcAaaaaaatgacagaagtaaacttacccgctgtggtccttgtcaaaatattcaaatgctttatatatgtgatcttccttctctaatctattcatgtgcatcgttgctgatataaattcaacataatcaatggacccatttccatcaacatcagcctatgcaagaagaaaatattatcagataggaaaggagaaaagatttatgaacaacaagctgaaacagaaaatgttgaatctaacagacaagttctagctgtggaaaagtcaattccatcttaactcagtatactgtttaaagtcacaaagtatggttccatttctcccttttcggatatatgaacaggacatttactaggatgacactacaatattggcactgtttggatccggagggctattaaatagccctccggaatcttgctatttaggagtattaaacgtagattactgacaaaacctattccataacccctaggctattttgcgagacgaatctaacgaggaatgttaatccaggatttgctacagtgatgctacagtaattagccgctaatcatggattaatatacatcattagattcgtctcacaaaatagcctaGgggttatggaatcggttttatcggtaatctacgtttaatactcctaaatagcaagattccggagggctatttaatagctcggaggatccaaacaaggccattatagtgaactactggcattggtacagaatcaagatatgagcgtgcagagacagaaagagaatatgagcataccgcttccatcaactgcattaattctgattccgaaattttagtgccaagctttggtagaccagctcttagttcttcaagagttatcgtcccactgttatcagtatctaaagatttgaacatttcctttaaacccacaatctcttcctctgacaagttctctgcaacgacctagccataacataataaaagacaagatttatcatgtattgcagaataaagtgcaaagccatagagaagaaatgcttgatgttcaaaacatcttattaccttcaaggcaaccttcttaagtttgttcattgctctgaactgcttcattctactgatcactgtaatatcaagtggtttatctggggcctctccatcctctctaatccatgggtggtctgtgtatttaaaatatcagattaagatactatacacagatgaagatttagtttgtaaaatcaccacaaatgcttttactaataatagcaagcagtgcgctttaaaagttccaaccacacatatgggcaaatcaattcgtagaaccaagattggcaacaaatagcagagtttgaaaatatcaacttactcaaaatttcagcagcagttaaccgctcctttgggtcctgccgaagcatccgcttgaccaagtcttttgcaccactagatatagaaggccatggttcagatgagaagtcgatatgaccttgcagaacagcatcaaatataccgtcctcgttttctggtaaaaccaacaaagggtccatgttaggataatggtatcaaaatctattggatgctttcttgtattgaacctggttctgggctttcttactaaaagcctgatgacatagtgatctgctctataaaaaaaactttttgatgcaaagagcagcgatatgtaatgtacctgcccagaatggaggaacccctgatagaaggatgtaaaggataactccagcactccatatgtctgcctcagctccatatagtcgttttaggacctcaggagccacataatatgcacttccaacaagatctctgaactgctcacctgcattcccacaccaccccatcagtttgaacacaccttgagcaccccatcagtgctacgattcatgacatttcctctcttgtggtcctgaaacaaaagcccatgccttgcctaacatgatgcacaggcctttgccgctatatttgtccctgatcccgctttgagttgaccatgagagcgtaaatgaagtgtaatccgacaggataccatagtcatcgcagttggaaggtgtccacacagagagcagatgatggctaatagattggtggTggatttggtttgtgtaaattatttatattaatttggaggaagcagcaaggaatgggcagtagaaaagaaagatgggaggataccgggcttgaagaagacggagaggccaaaatcggtggctttgagcggggagtcctcgcgcttgttgaggaagaggaagttctcgggcttgaggtccctgtgcatgactcccatggagtggcagctgtggacgacggagacgatctccctgcagagggcggcggcggcgcgctcggagtagtggcccctggcgatgatgcggtcgaagagctcgccgccctcgcagagctccatgacgaggttgacggagtggcggtcctcgtaggcgccgcgcagctcgacgatgttgcggtggccggtgaggtggtgcatgatgtggacctcgcggcggacgtcgtcgaggtcgtcggggcgggcgagcttgcgggcggcgatggacttgcaggcgtagcgtcggccggtgggcttgtgggtggcgaggtaggtcaccccgaactgcccccgccccagctcccgcccgaaggtgtaggtcgcacggacgtcctccatgggccgccccagcacccgccccaccccatcctccgccgccgcctgctggggcgcctgctggggctggtgccgcggcggcggcggaggctgagatcgcggctgctgcggcggcggcggcggcggtggctggggcttgggcttgggcttgggggcccgggtggtttggtggtggtggtggtgcttgtggtgtggggatggggattgggattgggattggtcgggggattggcggtggcgagaggcgcgggcgcccatcggtggcgagaggggttttggctttggttttgggggtttggattggggggaggaagaggggaggaggagg
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| CDS seq | atgggcgcccgcgcctctcgccaccgccaatcccccgaccaatcccaatcccaatccccatccccacaccacaagcaccaccaccaccaccaaaccacccgggcccccaagcccaagcccaagccccagccaccgccgccgccgccgccgcagcagccgcgatctcagcctccgccgccgccgcggcaccagccccagcaggcgccccagcaggcggcggcggaggatggggtggggcgggtgctggggcggcccatggaggacgtccgtgcgacctacaccttcgggcgggagctggggcgggggcagttcggggtgacctacctcgccacccacaagcccaccggccgacgctacgcctgcaagtccatcgccgcccgcaagctcgcccgccccgacgacctcgacgacgtccgccgcgaggtccacatcatgcaccacctcaccggccaccgcaacatcgtcgagctgcgcggcgcctacgaggaccgccactccgtcaacctcgtcatggagctctgcgagggcggcgagctcttcgaccgcatcatcgccaggggccactactccgagcgcgccgccgccgccctctgcagggagatcgtctccgtcgtccacagctgccactccatgggagtcatgcacagggacctcaagcccgagaacttcctcttcctcaacaagcgcgaggactccccgctcaaagccaccgattttggcctctccgtcttcttcaagcccggtgagcagttcagagatcttgttggaagtgcatattatgtggctcctgaggtcctaaaacgactatatggagctgaggcagacatatggagtgctggagttatcctttacatccttctatcaggggttcctccattctgggcagaaaacgaggacggtatatttgatgctgttctgcaaggtcatatcgacttctcatctgaaccatggccttctatatctagtggtgcaaaagacttggtcaagcggatgcttcggcaggacccaaaggagcggttaactgctgctgaaattttgaaccacccatggattagagaggatggagaggccccagataaaccacttgatattacagtgatcagtagaatgaagcagttcagagcaatgaacaaacttaagaaggttgccttgaaggtcgttgcagagaacttgtcagaggaagagattgtgggtttaaaggaaatgttcaaatctttagatactgataacagtgggacgataactcttgaagaactaagagctggtctaccaaagcttggcactaaaatttcggaatcagaattaatgcagttgatggaagcggctgatgttgatggaaatgggtccattgattatgttgaatttatatcagcaacgatgcacatgaatagattagagaaggaagatcacatatataaagcatttgaatattttgacaaggaccacagcgggttcataacagtcgatgaattggaagaagctctgacaaagtacgacatgggtgatgaagcgacaattaaagaaataattgctgaagtggatacagaccatgatggaagaattaactaccaggagtttgttgccatgatgaagaacaacagccctgagattgttccaaatcgacggcggatgttttaa
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| Protein seq | MGARASRHRQSPDQSQSQSPSPHHKHHHHHQTTRAPKPKPKPQPPPPPPPQQPRSQPPPPPRHQPQQAPQQAAAEDGVGRVLGRPMEDVRATYTFGRELGRGQFGVTYLATHKPTGRRYACKSIAARKLARPDDLDDVRREVHIMHHLTGHRNIVELRGAYEDRHSVNLVMELCEGGELFDRIIARGHYSERAAAALCREIVSVVHSCHSMGVMHRDLKPENFLFLNKREDSPLKATDFGLSVFFKPGEQFRDLVGSAYYVAPEVLKRLYGAEADIWSAGVILYILLSGVPPFWAENEDGIFDAVLQGHIDFSSEPWPSISSGAKDLVKRMLRQDPKERLTAAEILNHPWIREDGEAPDKPLDITVISRMKQFRAMNKLKKVALKVVAENLSEEEIVGLKEMFKSLDTDNSGTITLEELRAGLPKLGTKISESELMQLMEAADVDGNGSIDYVEFISATMHMNRLEKEDHIYKAFEYFDKDHSGFITVDELEEALTKYDMGDEATIKEIIAEVDTDHDGRINYQEFVAMMKNNSPEIVPNRRRMF |
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| Function | Calcium-dependent protein kinase 15 [UniProtKB/Swiss-Prot:Q6I587] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0028230 | OsLima_05g0028230.01 | Chr05 | 30220160 | 30224268 | - | NAM | ||
| CDS seq | atgggcgcccgcgcctctcgccaccgccaatcccccgaccaatcccaatcccaatccccatccccacaccacaagcaccaccaccaccaccaaaccacccgggcccccaagcccaagcccaagccccagccaccgccgccgccgccgccgcagcagccgcgatctcagcctccgccgccgccgcggcaccagccccagcaggcgccccagcaggcggcggcggaggatggggtggggcgggtgctggggcggcccatggaggacgtccgtgcgacctacaccttcgggcgggagctggggcgggggcagttcggggtgacctacctcgccacccacaagcccaccggccgacgctacgcctgcaagtccatcgccgcccgcaagctcgcccgccccgacgacctcgacgacgtccgccgcgaggtccacatcatgcaccacctcaccggccaccgcaacatcgtcgagctgcgcggcgcctacgaggaccgccactccgtcaacctcgtcatggagctctgcgagggcggcgagctcttcgaccgcatcatcgccaggggccactactccgagcgcgccgccgccgccctctgcagggagatcgtctccgtcgtccacagctgccactccatgggagtcatgcacagggacctcaagcccgagaacttcctcttcctcaacaagcgcgaggactccccgctcaaagccaccgattttggcctctccgtcttcttcaagcccggtgagcagttcagagatcttgttggaagtgcatattatgtggctcctgaggtcctaaaacgactatatggagctgaggcagacatatggagtgctggagttatcctttacatccttctatcaggggttcctccattctgggcagaaaacgaggacggtatatttgatgctgttctgcaaggtcatatcgacttctcatctgaaccatggccttctatatctagtggtgcaaaagacttggtcaagcggatgcttcggcaggacccaaaggagcggttaactgctgctgaaattttgaaccacccatggattagagaggatggagaggccccagataaaccacttgatattacagtgatcagtagaatgaagcagttcagagcaatgaacaaacttaagaaggttgccttgaaggtcgttgcagagaacttgtcagaggaagagattgtgggtttaaaggaaatgttcaaatctttagatactgataacagtgggacgataactcttgaagaactaagagctggtctaccaaagcttggcactaaaatttcggaatcagaattaatgcagttgatggaagcggctgatgttgatggaaatgggtccattgattatgttgaatttatatcagcaacgatgcacatgaatagattagagaaggaagatcacatatataaagcatttgaatattttgacaaggaccacagcgggttcataacagtcgatgaattggaagaagctctgacaaagtacgacatgggtgatgaagcgacaattaaagaaataattgctgaagtggatacagaccatgatggaagaattaactaccaggagtttgttgccatgatgaagaacaacagccctgagattgttccaaatcgacggcggatgttttaa
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| Protein seq | MGARASRHRQSPDQSQSQSPSPHHKHHHHHQTTRAPKPKPKPQPPPPPPPQQPRSQPPPPPRHQPQQAPQQAAAEDGVGRVLGRPMEDVRATYTFGRELGRGQFGVTYLATHKPTGRRYACKSIAARKLARPDDLDDVRREVHIMHHLTGHRNIVELRGAYEDRHSVNLVMELCEGGELFDRIIARGHYSERAAAALCREIVSVVHSCHSMGVMHRDLKPENFLFLNKREDSPLKATDFGLSVFFKPGEQFRDLVGSAYYVAPEVLKRLYGAEADIWSAGVILYILLSGVPPFWAENEDGIFDAVLQGHIDFSSEPWPSISSGAKDLVKRMLRQDPKERLTAAEILNHPWIREDGEAPDKPLDITVISRMKQFRAMNKLKKVALKVVAENLSEEEIVGLKEMFKSLDTDNSGTITLEELRAGLPKLGTKISESELMQLMEAADVDGNGSIDYVEFISATMHMNRLEKEDHIYKAFEYFDKDHSGFITVDELEEALTKYDMGDEATIKEIIAEVDTDHDGRINYQEFVAMMKNNSPEIVPNRRRMF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.261399 | 0.057807 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0585500 | RBH | 3.419095 | 3.191258 | 9.642636 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50810 | RBH | 2.148313 | 1.980216 | 2.301212 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0585500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028640 | RBH | 0.745757 | 25.629038 | 8.386360 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028430 | RBH | 0.814347 | 5.493886 | 5.068793 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028430 | RBH | 2.773290 | 26.133566 | 13.495915 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028490 | RBH | 0.326130 | 0.820630 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028380 | RBH | 6.615035 | 10.535065 | 27.484226 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0455900 | RBH | 5.4072935 | 65.8793375 | 16.744816 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028120 | RBH | 0.266830 | 0.867667 | 1.586398 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0468900 | RBH | 4.4572105 | 53.7145195 | 10.4008135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024660 | RBH | 0.747721 | 0.189265 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0000480 | RBH | 0.485451 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028370 | RBH | 3.523620 | 20.212009 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028360 | RBH | 1.236380 | 1.829010 | 1.745510 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028410 | RBH | 0.471337 | 12.273121 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027920 | RBH | 0.624053 | 4.980934 | 2.638279 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028440 | RBH | 1.594085 | 44.571224 | 16.155733 |
