Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0024660 | OGI:01076810 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:26288667-26293159 | ||||||||
| Gene Symbol | CDPK1, OsCDPK1, OsCPK1, CPK1 | ||||||||||
| DNA seq | ggtcgtctccgcggagcgcgtctactactcgtgcgcttctgcttcctgttcaaacccaacgctccaccacatcgccttcgttccccaccccgactgacccagcctccagtagccatgggcaaccgcacgtcgcgccaccaccgcgccgctcccgagcagccgccgccccagcccaagccgaagcctcagccgcagcagcagcagcagcagcagtggccgaggccgcagcagccgaccccgccgccggcggcggcgccggacgcggcgatggggagggtgctggggcggccgatggaggacgtccgcgcgacctacaccttcgggcgcgagctcgggcggggccagttcggggtcacctacctcgtcacccacaaggccacggggaagcgcttcgcctgcaagtccatcgccacgcggaagctcgcccaccgcgacgacatcgaggacgtgcgccgggaggtgcagatcatgcaccacctcacgggccaccgcaacatcgtcgagctccggggcgcctacgaggaccgccactcggtcaacctcatcatggagctctgcgagggcggggagctcttcgaccgcatcatcgccagggggcactactccgagcgcgccgccgccgcgctctgccgcgagatcgtcgccgtcgtgcacagctgccactccatgggggtcttccaccgggatctcaagccggagaactttttgttcctcagtaaaagcgaggactcgccgctcaaggccactgacttcggtctttccgttttcttcaagcctggtgcgtgctcgaggcttcactatctcattacagaggaatggatcgcgagatatttcattgttccagtgtttgacttcatgaggattttgggtttacttagatcgagttgttgggtttgacaggtctgaaagtttcaccgttactagaattaggggctagatgcaacgctgcaagtgccattatgtttatacttatagatgttccagatgcagtgttctagttagcattggatccatccaccttactccactatagcttgggcaatctctgtgtttgcgtttaccgagatggcattgtacatttgcatgatttgcactttaggcactggatattttccccactggtagctaaatgctggcggcatagcatgcaagatcttcaaaaatgcactcagcaatatcagaaatgccatctgaacttagtgggtgaagcttgactcttcattatgcagaaatgttggtgacggtggaggattttgttgttttagtgtttttcttttacaatgatggtgggggattcttcattctgaacttggctttatttttcttacacttggcatgtgcaaactgagtgctatatgtcccgtagggcctcgttgctaagtgctacaagatctattgcactggaactcgtggttatggacccgaattctttagtatggaacaatgtctttccaggtaaaaaCccccagtatatgaaagaatggaaaggtgttttcgttcttttcttgtggaataagaagcctcataccttagtggaaggaaaataagatttttttttttcaattaggtatttgaccaaataggatcgtctggttcctatagaacctaccactaaaatacccaataggactaagtggaacgaaaaggattttccttgagatggtaaatgaaaatgcctattgtggatgttgcaggggagcattttaaggaccttgttggaagtgcatattatgttgcacctgaggtgctgaaacgaaactatggagcagaggctgacatatggagtgctggcgttattctttacatccttctttctggtgttccacctttttgggcaggtgaggtgacgtttgccgcttcttatttcagtcaactttttttgcttctgttgctaacatagatgttctaccttcattttttcagagagtgaagatggtatatttgatgccgtattacgtggtcacattgatttctcgtctgaaccttggccttcgatatccaatggtgcaaaagatttggttaagaagatgttgcggcaagacccaaaagagcgccttacttctgctgaaattttgagtaagtccaccatagctctttaatggcattcttatcaacagaaaaatgcacacttgtctagtagttcagtagcaaattgagatcaaacaattcttctggtttcttcctattgtactttttcatgcaaaagccttgacctgtagctagtagttactgtagtatctcagagccaagacgctcacttttactgtcccattttttttaaaagagtattcgggtctttttaatagataatttctgctcttgtttctatataaaccgagttatcatttttactgtttgcaaatatagttaatgcacctaatactttaaatatacagaccacccatggattagagaggatggagaagccccagacaagccacttgacattacagttatcagcaggatgaagcagttcagggcaatgaacaagcttaagaaagttgcattgaaggtgtcttctgagtatttattttcgctgctaccaactagtattgcatcattagataattctgacccttttgtttataaaactaggttgttgcagagaacttgtcagatgaagagattacaggcttaaaagaaatgttcagatccttggatactgataacagtgggacaataactcttgaggagctaagatctggtttaccaaaacttggcaccaaaatttctgaatcagaaattaaacagctgatggaggcggtatgtttttgctctgcaggcagacacttgagctttcaattgattttttttttagataatggaatattaatatcccagtcactgcacccatagatgcacaaaactataatcacttattacaagttttccacagaaagcgaaataaattaaacataaagcagcatcctgccgaagtgtttggcctttacttcggagcgcccgctcatggcttggtttcctatcgctcctatgtagtggtcggccttaaaagtatctttggactctggcaatcatgtgttactgcggagcgcctatcgcgtgcacgtgcgcgtgcacggcgagagagaatactagttatgctttgcccaaagggaccggaacagtctagtctctagctacctagcttcggctatttcaagtgcctgctgagcttcttccggatcaatcttagcagctgatcctacttagaatgaagccacattaagcttaatgtagactgagacagtaacaagatgctcatttgaaaggaatggttatatggaagaatttgagtatttggcagtagcatgtatacacaactgttctggtggttccagcacatgccatcatatcattatttccttgttttcccaaacaggctgatgttgatggaaatggaaccattgactatgctgagttcatatcagcgacaatgcacatgaacagattggagaaggaagaccacatacttaaagcatttgagtattttgataaggaccacagcgggtaacttcaaatcgattttttttgggtcttgttctatctgttgtttgttagttctcattaatttgctaattttaaatctctctgagcagatacataacagtagatgagttggaagaagctctgaagaagtatgatatgggggacgataaaacgattaaggaaatcatcgctgaagtagatactgatcatgtaagtatattctgtaacacatcttaaagcaagctctttgataacaaaatgtgcatgtcccaaccatcctacaaggagaatgccaaaaatttccaatcctaaagtacctttcttaagtagaatttgagctcaaacacaggctgcgaggcccatttattacagtgctaatttttccattttttgttttcacaggatggaagaattaactaccaggagtttgtcgccatgatgaggaacaacaaccctgagattgctcccaaccggcggcgcatgttctaacttcctttacaattgttgaaagaatactgtttgtctttcctcattatattccaagaaccccttaagaggcttgatcatctgagatccatacacctgttgccagggcttggacccatttgtactcaaatggagttgcgcgatatatcatttgtagatgcctggaccatcatggatttctgagtgctgctttgttattcgttgcctcatcattcaatttggagtgtaacctcaacgggatgatcagttcaactgctcttccgagcgtgttgcgacttgtgactatatgccacttgatcgtttgtattagatcaggtgttgtaaaacagattttagtgataagatcaggaaaggttatattattctggagaaacagtttaatcttgcttctgaatttcccggccgtatgagaacgtgctattcgagctgaaaccgttcgatctgtccagcagtattgctctcgctgttctcgtcaggacaaaccttgcgcttgcgcgtttactggagtttcgctttgcacc
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| CDS seq | atgggcaaccgcacgtcgcgccaccaccgcgccgctcccgagcagccgccgccccagcccaagccgaagcctcagccgcagcagcagcagcagcagcagtggccgaggccgcagcagccgaccccgccgccggcggcggcgccggacgcggcgatggggagggtgctggggcggccgatggaggacgtccgcgcgacctacaccttcgggcgcgagctcgggcggggccagttcggggtcacctacctcgtcacccacaaggccacggggaagcgcttcgcctgcaagtccatcgccacgcggaagctcgcccaccgcgacgacatcgaggacgtgcgccgggaggtgcagatcatgcaccacctcacgggccaccgcaacatcgtcgagctccggggcgcctacgaggaccgccactcggtcaacctcatcatggagctctgcgagggcggggagctcttcgaccgcatcatcgccagggggcactactccgagcgcgccgccgccgcgctctgccgcgagatcgtcgccgtcgtgcacagctgccactccatgggggtcttccaccgggatctcaagccggagaactttttgttcctcagtaaaagcgaggactcgccgctcaaggccactgacttcggtctttccgttttcttcaagcctggggagcattttaaggaccttgttggaagtgcatattatgttgcacctgaggtgctgaaacgaaactatggagcagaggctgacatatggagtgctggcgttattctttacatccttctttctggtgttccacctttttgggcagagagtgaagatggtatatttgatgccgtattacgtggtcacattgatttctcgtctgaaccttggccttcgatatccaatggtgcaaaagatttggttaagaagatgttgcggcaagacccaaaagagcgccttacttctgctgaaattttgaaccacccatggattagagaggatggagaagccccagacaagccacttgacattacagttatcagcaggatgaagcagttcagggcaatgaacaagcttaagaaagttgcattgaaggttgttgcagagaacttgtcagatgaagagattacaggcttaaaagaaatgttcagatccttggatactgataacagtgggacaataactcttgaggagctaagatctgcacatgccatcatatcattatttccttgttttcccaaacaggctgatgttgatggaaatggaaccattgactatgctgagttcatatcagcgacaatgcacatgaacagattggagaaggaagaccacatacttaaagcatttgagtattttgataaggaccacagcggatacataacagtagatgagttggaagaagctctgaagaagtatgatatgggggacgataaaacgattaaggaaatcatcgctgaagtagatactgatcatgatggaagaattaactaccaggagtttgtcgccatgatgaggaacaacaaccctgagattgctcccaaccggcggcgcatgttctaa
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| Protein seq | MGNRTSRHHRAAPEQPPPQPKPKPQPQQQQQQQWPRPQQPTPPPAAAPDAAMGRVLGRPMEDVRATYTFGRELGRGQFGVTYLVTHKATGKRFACKSIATRKLAHRDDIEDVRREVQIMHHLTGHRNIVELRGAYEDRHSVNLIMELCEGGELFDRIIARGHYSERAAAALCREIVAVVHSCHSMGVFHRDLKPENFLFLSKSEDSPLKATDFGLSVFFKPGEHFKDLVGSAYYVAPEVLKRNYGAEADIWSAGVILYILLSGVPPFWAESEDGIFDAVLRGHIDFSSEPWPSISNGAKDLVKKMLRQDPKERLTSAEILNHPWIREDGEAPDKPLDITVISRMKQFRAMNKLKKVALKVVAENLSDEEITGLKEMFRSLDTDNSGTITLEELRSAHAIISLFPCFPKQADVDGNGTIDYAEFISATMHMNRLEKEDHILKAFEYFDKDHSGYITVDELEEALKKYDMGDDKTIKEIIAEVDTDHDGRINYQEFVAMMRNNNPEIAPNRRRMF |
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| Function | Calcium-dependent protein kinase 1 [UniProtKB/Swiss-Prot:A2ZVI7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0024660 | OsLima_01g0024660.01 | Chr01 | 26288667 | 26293159 | + | NAM | ||
| CDS seq | atgggcaaccgcacgtcgcgccaccaccgcgccgctcccgagcagccgccgccccagcccaagccgaagcctcagccgcagcagcagcagcagcagcagtggccgaggccgcagcagccgaccccgccgccggcggcggcgccggacgcggcgatggggagggtgctggggcggccgatggaggacgtccgcgcgacctacaccttcgggcgcgagctcgggcggggccagttcggggtcacctacctcgtcacccacaaggccacggggaagcgcttcgcctgcaagtccatcgccacgcggaagctcgcccaccgcgacgacatcgaggacgtgcgccgggaggtgcagatcatgcaccacctcacgggccaccgcaacatcgtcgagctccggggcgcctacgaggaccgccactcggtcaacctcatcatggagctctgcgagggcggggagctcttcgaccgcatcatcgccagggggcactactccgagcgcgccgccgccgcgctctgccgcgagatcgtcgccgtcgtgcacagctgccactccatgggggtcttccaccgggatctcaagccggagaactttttgttcctcagtaaaagcgaggactcgccgctcaaggccactgacttcggtctttccgttttcttcaagcctggggagcattttaaggaccttgttggaagtgcatattatgttgcacctgaggtgctgaaacgaaactatggagcagaggctgacatatggagtgctggcgttattctttacatccttctttctggtgttccacctttttgggcagagagtgaagatggtatatttgatgccgtattacgtggtcacattgatttctcgtctgaaccttggccttcgatatccaatggtgcaaaagatttggttaagaagatgttgcggcaagacccaaaagagcgccttacttctgctgaaattttgaaccacccatggattagagaggatggagaagccccagacaagccacttgacattacagttatcagcaggatgaagcagttcagggcaatgaacaagcttaagaaagttgcattgaaggttgttgcagagaacttgtcagatgaagagattacaggcttaaaagaaatgttcagatccttggatactgataacagtgggacaataactcttgaggagctaagatctgcacatgccatcatatcattatttccttgttttcccaaacaggctgatgttgatggaaatggaaccattgactatgctgagttcatatcagcgacaatgcacatgaacagattggagaaggaagaccacatacttaaagcatttgagtattttgataaggaccacagcggatacataacagtagatgagttggaagaagctctgaagaagtatgatatgggggacgataaaacgattaaggaaatcatcgctgaagtagatactgatcatgatggaagaattaactaccaggagtttgtcgccatgatgaggaacaacaaccctgagattgctcccaaccggcggcgcatgttctaa
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| Protein seq | MGNRTSRHHRAAPEQPPPQPKPKPQPQQQQQQQWPRPQQPTPPPAAAPDAAMGRVLGRPMEDVRATYTFGRELGRGQFGVTYLVTHKATGKRFACKSIATRKLAHRDDIEDVRREVQIMHHLTGHRNIVELRGAYEDRHSVNLIMELCEGGELFDRIIARGHYSERAAAALCREIVAVVHSCHSMGVFHRDLKPENFLFLSKSEDSPLKATDFGLSVFFKPGEHFKDLVGSAYYVAPEVLKRNYGAEADIWSAGVILYILLSGVPPFWAESEDGIFDAVLRGHIDFSSEPWPSISNGAKDLVKKMLRQDPKERLTSAEILNHPWIREDGEAPDKPLDITVISRMKQFRAMNKLKKVALKVVAENLSDEEITGLKEMFRSLDTDNSGTITLEELRSAHAIISLFPCFPKQADVDGNGTIDYAEFISATMHMNRLEKEDHILKAFEYFDKDHSGYITVDELEEALKKYDMGDDKTIKEIIAEVDTDHDGRINYQEFVAMMRNNNPEIAPNRRRMF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0024660 | OsLima_01g0024660.02 | Chr01 | 26288679 | 26293008 | + | IsoSeq | ||
| CDS seq | atggagcagaggctgacatatggagtgctggcgttattctttacatccttctttctggtgttccacctttttgggcagagagtgaagatggtatatttgatgccgtattacgtggtcacattgatttctcgtctgaaccttggccttcgatatccaatggtgcaaaagatttggttaagaagatgttgcggcaagacccaaaagagcgccttacttctgctgaaa
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| Protein seq | MEQRLTYGVLALFFTSFFLVFHLFGQRVKMVYLMPYYVVTLISRLNLGLRYPMVQKIWLRRCCGKTQKSALLLLK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.747721 | 0.189265 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0622600 | RBH | 6.075481 | 5.042758 | 12.054248 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43410 | RBH | 3.824393 | 3.175967 | 2.882164 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0622600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025710 | RBH | 2.888201 | 38.119812 | 10.559969 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025320 | RBH | 0.412190 | 15.207831 | 4.431913 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025660 | RBH | 4.985551 | 38.227745 | 18.693007 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024980 | RBH | 0.291081 | 2.043016 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024720 | RBH | 14.503096 | 53.795071 | 31.887833 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0416700 | RBH | 27.4103355 | 73.953995 | 11.035935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024400 | RBH | 0.643163 | 3.882812 | 2.165965 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0405600 | RBH | 20.733889 | 55.091656 | 37.6093235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0028230 | RBH | 0.261399 | 0.057807 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024660 | RBH | 2.076327 | 24.305613 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024920 | RBH | 10.087934 | 26.098791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024910 | RBH | 2.575967 | 3.052342 | 1.656007 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024780 | RBH | 2.358447 | 22.320553 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025050 | RBH | 2.101891 | 22.744055 | 9.793181 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024790 | RBH | 3.915935 | 34.186348 | 11.630494 |
