Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0026490 | OGI:05075680 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:29015982-29019438 | ||||||||
| Gene Symbol | DI19-1, OsDi19-1 | ||||||||||
| DNA seq | tggcacggtacaagtgataccatcacgtacaacacgttacagatgcttcatcttacagcataatcttccaaaaccaaccagttgtaaacttggtttattatactctcacagaagtagacaaactgcataccattctgctgtcccgtaacataattattacgttggtacaagaaaccaatgcttctaaacatagaagcgctacAaacacaaccgcgatctgctacgtgtatcatatgctgatcgcggattgttatggaactggagatacagattacagaccggctacaataacacttaagatgcccccgtgcccacatcaactctgcaccttacgggaggaaacgacgcctggtgccgcagaagcgtgcctatctgccatggatattaccttcagcaatttgaccgggcacttatctatgcaaatatgcaccaggatttacccatgcatctatcgactacttaggctcatcttgatttattaatctccaaataaagtagtgagcagcaggtcttgcacaaatgttgctctgacactcgcttgcttccgtttctgttccctttcttcccttgtgagggatgagtcaatactgcaaatgAaaaaaaaaattagcagatcattcaactgccaaaatttgaaatttataatatatacctcccaaatagtcctaacatgcaggaagccatacagcagcttgttgctacacgctactcatcagtcaaacaacttgctactgtacatttattcagtacttcgtacaatgctattatcaacggaatatactggcttatcttattggactcgaattattgtgatcaaacatgagctcatgttctctgaacgtattgtacttaaaattgcattgaaactaaacattgacatagggcacgagtacaacaatagcttttatgaaattttgtgatgagtcagatagcgatgctagttctgaatttgcaagacaaccaagtctcaggtgttattcaggaggataacaaggaacaaggtaatcactacaaccttcgagtataccacgtgtttctatctagcacgaacaagagcaaataccttgaatcccatggctgagcaGGtgtctcttttaccacagatgcatcatctggaatggaaataggtggttttgatgtttcctctgtgtctgatgttggaaagctaaggccaaacgatgacagaagagggtcagctgaaatatttgttgtgttgctgctgttgtttgacctatgtcccccacctcccagaagcacctgcaaatgggcttcacgtagatctcgactcagcaaagatagggcttgactgcctggaataacgaatctgcgcaacctgcgacgattctgcaggttgtataaagttagcaaacctcaagtgtgaacctctcaaaactcaaaaatatatatcttttatgcatcagctgtcatccacagcatgtattacatggggctgattggttgagtaggcactagataaatatacaggaaagcggaagtaccttgaacaagtacccatgttgcacagtgatatgattaagcatatcttttgcaatcttatcagagcatatagggcaaggctgaaatgaaggaaagaaacaatcaaaacaagacaataaactgttatctagaatattacaaggaaagaaaatatatttccagccatgtatagagcttgcagtagaacagataaacacaagattatgcagttgaggaataagaaaagaggcatctgtgtgagtccaacacagaacaatttgattttttttttcacaaaatacaaaagctaatctgtttttacaccttacgcaaagcagctgcacaacaagatggcaagagcaaacttcctctttcactccaggttccataacacatactcaagttttacctaataaacgaactagtgaccatatgaacttcggacaagctgatcctgaaaactgaggcaagcaaaatttaggcctcctttgaaacaaaggatttgtggaggaattttgtaggattccaatcctataggaaagtttcatatttggtcctctgaaacaaaggattggagcttctcaaatcctatgaaattccttaggaatggctcaatacatgtagattttaaaggaaagctagcaagagatacaacctcttggaaaatttcctttgagtctatctttgtcatctatttcctgtgcttctcctattcatgtattttaccattcctcatttcaaccggagccttaacttatctttggagagctgatggctatatatattaaccacagttaagtacgctatcatttcctcaagcatttgcttataacatcaacggttgccaacatttccacttctttttttttgcctctccatatacctatttttgcgcagccccaaatctggtcgtggctccatgcaaaactacaaacttgattactactttcgatgcccaagagaatgatccaactaaaattgcatcgctgtacaggtcaacacctcaagctttccatcttttaattcagcaacatatgctctaagcatgagctcgtcctccaggtcaaccaaaacaaagaacgccatctcttctactcatccaacaagagcagattacgagggggacgaacaactcaccgccgcatggggctcgaaggggtgctcctcctccaggtgcgcgcagagggagacgacgtcgtggtcctcgtagcagtaggggcacgcgaactccggcctcacctcctcgtccatgtccacctcctccatccccgctcgatctgcacccagcaaaaccaaaccaaataatcagAaaaaaaaaATCCCCCCATTAAACAGCCCCCGCACCGCACGGCAAAAGGGAGAAATCGAACAAATCCGAGGAGAAGAGAGAGAGAGAGCGAGGTGGACGCACCGGCGTGGCCGAGCTGCGCGGCGTAGAACCGCTTGGCGGCGGCCAGGCGCGAGATCCAGTGCTCCGAGTCCATAGGCTTCGGCGGAGCGGGTAAGATAAGGCTCGCTCCCCTCCCCTCCCCCACTCTCCTCTCCTCGTAGCGTTGGCCGCCGTTCCTCTCCTCGGCTCCACGCGATCAGCACGGCGGAGATGGAGCTCGGCGGGGTCGTCGGCGGGGAGAGGAGGAGGAGGGGGAGGAGATAGTCTCCTCGTGCCTTATCGGGAGGTGAGGTGAGGTGAGATGCGGGGGAGGAGTGAGGAATGGAGCTAGGTATACCGCGGGTTTTTTTTTTTTTTATTCTTTGGGCACCGGGTCGCGACTCGCGAGGTCGCCGTCCCCCGCCGCGTCATCGACTCCTCACCAGCCAAGCCGGTGGCTGCCGCTGCCTCCCGGTGTTTTTGGGCGGTTTTACTCTTACCCCGCCGTGAAACGGAAACACGCCGCGTCGCCTTTGTCGCCGCCCACCGTATGGTGGATTGGTGGGGCCACGCCGCGGCGCCGGCGGCGTTCGCGCCAAATGCCCACAGCGT
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| CDS seq | ATGGACTCGGAGCACTGGATCTCGCGCCTGGCCGCCGCCAAGCGGTTCTACGCCGCGCAGCTCGGCCACGCCGatcgagcggggatggaggaggtggacatggacgaggaggtgaggccggagttcgcgtgcccctactgctacgaggaccacgacgtcgtctccctctgcgcgcacctggaggaggagcaccccttcgagccccatgcggcgccttgccctatatgctctgataagattgcaaaagatatgcttaatcatatcactgtgcaacatgggtacttgttcaagaatcgtcgcaggttgcgcagattcgttattccaggcagtcaagccctatctttgctgagtcgagatctacgtgaagcccatttgcaggtgcttctgggaggtgggggacataggtcaaacaacagcagcaacacaacaaatatttcagctgaccctcttctgtcatcgtttggccttagctttccaacatcagacacagaggaaacatcaaaaccacctatttccattccagatgatgcatctgtggtaaaagagacaCCtgctcagccatgggattcaagtattgactcatccctcacaagggaagaaagggaacagaaacggaagcaagcgagtgtcagagcaacatttgtgcaagacctgctgctcactactttatttggagattaa
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| Protein seq | MDSEHWISRLAAAKRFYAAQLGHADRAGMEEVDMDEEVRPEFACPYCYEDHDVVSLCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFKNRRRLRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISIPDDASVVKETPAQPWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLFGD |
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| Function | Protein DEHYDRATION-INDUCED 19 [UniProtKB/Swiss-Prot:Q688X9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026490 | OsLima_05g0026490.03 | Chr05 | 29015982 | 29019438 | - | NAM | ||
| CDS seq | ATGGACTCGGAGCACTGGATCTCGCGCCTGGCCGCCGCCAAGCGGTTCTACGCCGCGCAGCTCGGCCACGCCGatcgagcggggatggaggaggtggacatggacgaggaggtgaggccggagttcgcgtgcccctactgctacgaggaccacgacgtcgtctccctctgcgcgcacctggaggaggagcaccccttcgagccccatgcggcgccttgccctatatgctctgataagattgcaaaagatatgcttaatcatatcactgtgcaacatgggtacttgttcaagaatcgtcgcaggttgcgcagattcgttattccaggcagtcaagccctatctttgctgagtcgagatctacgtgaagcccatttgcaggtgcttctgggaggtgggggacataggtcaaacaacagcagcaacacaacaaatatttcagctgaccctcttctgtcatcgtttggccttagctttccaacatcagacacagaggaaacatcaaaaccacctatttccattccagatgatgcatctgtggtaaaagagacaCCtgctcagccatgggattcaagtattgactcatccctcacaagggaagaaagggaacagaaacggaagcaagcgagtgtcagagcaacatttgtgcaagacctgctgctcactactttatttggagattaa
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| Protein seq | MDSEHWISRLAAAKRFYAAQLGHADRAGMEEVDMDEEVRPEFACPYCYEDHDVVSLCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFKNRRRLRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISIPDDASVVKETPAQPWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLFGD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026490 | OsLima_05g0026490.01 | Chr05 | 29015982 | 29019438 | - | NAM | ||
| CDS seq | ATGGACTCGGAGCACTGGATCTCGCGCCTGGCCGCCGCCAAGCGGTTCTACGCCGCGCAGCTCGGCCACGCCGatcgagcggggatggaggaggtggacatggacgaggaggtgaggccggagttcgcgtgcccctactgctacgaggaccacgacgtcgtctccctctgcgcgcacctggaggaggagcaccccttcgagccccatgcggcgaatcgtcgcaggttgcgcagattcgttattccaggcagtcaagccctatctttgctgagtcgagatctacgtgaagcccatttgcaggtgcttctgggaggtgggggacataggtcaaacaacagcagcaacacaacaaatatttcagctgaccctcttctgtcatcgtttggccttagctttccaacatcagacacagaggaaacatcaaaaccacctatttccattccagatgatgcatctgtggtaaaagagacaCCtgctcagccatgggattcaagtattgactcatccctcacaagggaagaaagggaacagaaacggaagcaagcgagtgtcagagcaacatttgtgcaagacctgctgctcactactttatttggagattaa
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| Protein seq | MDSEHWISRLAAAKRFYAAQLGHADRAGMEEVDMDEEVRPEFACPYCYEDHDVVSLCAHLEEEHPFEPHAANRRRLRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISIPDDASVVKETPAQPWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLFGD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026490 | OsLima_05g0026490.02 | Chr05 | 29015982 | 29019438 | - | NAM | ||
| CDS seq | ATGGACTCGGAGCACTGGATCTCGCGCCTGGCCGCCGCCAAGCGGTTCTACGCCGCGCAGCTCGGCCACGCCGatcgagcggggatggaggaggtggacatggacgaggaggtgaggccggagttcgcgtgcccctactgctacgaggaccacgacgtcgtctccctctgcgcgcacctggaggaggagcaccccttcgagccccatgcggcgccttgccctatatgctctgataagattgcaaaagatatgcttaatcatatcactgtgcaacatgggtacttgttcaagaatcgtcgcaggttgcgcagattcgttattccaggcagtcaagccctatctttgctgagtcgagatctacgtgaagcccatttgcaggtgcttctgggaggtgggggacataggtcaaacaacagcagcaacacaacaaatatttcagctgaccctcttctgtcatcgtttggccttagctttccaacatcagacacagaggaaacatcaaaaccacctatttccattccagatgatgcatctgtggtaaaagagacaCCtgctcagccatgggattcaagtattgactcatccctcacaagggaagaaagggaacagaaacggaagcaagcgagtgtcagagcaacatttgtgcaagacctgctgctcactactttatttggagattaa
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| Protein seq | MDSEHWISRLAAAKRFYAAQLGHADRAGMEEVDMDEEVRPEFACPYCYEDHDVVSLCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFKNRRRLRRFVIPGSQALSLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISIPDDASVVKETPAQPWDSSIDSSLTREEREQKRKQASVRATFVQDLLLTTLFGD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 29015982 | 29016568 | - | OsLima_05g0026490.01,OsLima_05g0026490.03 | OsLima_05g0026490.01,OsLima_05g0026490.02,OsLima_05g0026490.03 | All |
| SE | Chr05 | 29017325 | 29018595 | - | OsLima_05g0026490.02,OsLima_05g0026490.03 | OsLima_05g0026490.01,OsLima_05g0026490.03,OsLima_05g0026490.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.526147 | 0.903582 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0562200 | RBH | 13.126528 | 7.732893 | 19.021618 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48800 | RBH | 7.125103 | 4.191114 | 3.940859 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0562200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026890 | RBH | 4.772611 | 66.981987 | 20.939194 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026670 | RBH | 1.694588 | 11.803843 | 7.004980 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026660 | RBH | 9.549325 | 50.322464 | 19.478371 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026740 | RBH | 1.129486 | 1.082243 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026670 | RBH | 29.947863 | 27.397505 | 48.473137 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0435700 | RBH | 18.0908945 | 65.061466 | 130.0596655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026310 | RBH | 2.150339 | 2.627347 | 2.948647 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0447100 | RBH | 28.4320965 | 86.8412205 | 41.981211 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027620 | RBH | 0.769171 | 0.563109 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026380 | RBH | 3.128997 | 24.993477 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026570 | RBH | 39.365082 | 40.199154 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026620 | RBH | 4.189147 | 2.699401 | 6.391945 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026620 | RBH | 2.319718 | 18.447863 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026100 | RBH | 3.936767 | 7.474583 | 10.412211 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026620 | RBH | 7.629814 | 47.884430 | 26.204000 |
