Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0027620 | OGI:01083930 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:28945905-28949335 | ||||||||
| Gene Symbol | OsDi19-3 | ||||||||||
| DNA seq | acggcgcgcaccatttcttcccacccgctgctgcttcctcgcctttccgataagaagcttcgccgtctcctcctcctctttcccttcctccgccgctccatcaaaaaatctccacaaggcttaagcagagggagggtgagggattagaaacaaacaacccttcggagaaaatcacgagaggcttcccgagggcaaagtctccgattcattcaggtccgactcgatcggcgatccgacgaagctcgagcaggtgagggagacggactcggactcggagcacggaaccggtatattagggaggctgaagagggagcttgagagggggtctagccttaagctcgaacgcggggtggtggttgtaccagcagcagcagggaatcatggactcggagcactggatctcgagcctcgccgccgccaagcggttctacgcggcgcagctcggtcacgtcgacggtatgcggccatctcgacttttccctcgaatctttgtttggctttctgctgttgctgttgctgatttgtgatttgattcgttggattgggcgcgcagatatggcggggattggaatggaggaggtggagatggagatggaggatgatggcgagggcatggagctggagctggagatgcagctggaggaggcgacgtggccggacgtggcctgcccctactgctacgaggaccacgacatcgcgtccctctgcgcccacctcgaggaggaccacccctacgagccccacaccgcggtgagctcctcgccgccatgccctgcgccgcagggctccttgctctgacgctctgatgacatgacgcacaaagtctggcaaagctgctccttttgttcgattagtaggaacgctgtagctttaggggttgacttggcgaatgaactcaatatttgggctacttgtggagttgcggtagtagcaaacttgcggggtatcttcttgaaatagccaaaattcttgagatgatagtattatgcaaagctcctctagccttgagttcttgcctctctatggcttggcttgcaatagtttgtgagcaaagaggtagaatctttggtatctgtatagtatcagtcaactacggagcataagcttatggattcagaacttggctgaaaacactagcgatttggactgggaaattgtgattttgtgattcgtaggtagggaagttgtgttgtagttttaagggcaaggataattatatatttcttataagaactgtagattatgcttgactgaaggttttaaatcagtagccagcattgttcacttctgtagttgactgctctagcttgtagttgtgtgttctatttcaaggcctacttctgtaaacaaggtagctaatttcctttttatttgattgccactatagtacttatgtcactgcgccgactgtgcaccctactcttggtggacagctgctcagttgtcataaactaaatgttcatgaataccatgacttaaaaacgtaatcctctgttattcatctaacttcagcaacaggagttgattttgcaatggcacaaaataacctagaaaagttaatgatggtaatgtgatttagatttaaatgactcgaactgttgtgtggggtccatttttaagatttggattcattttattctagtgaaacagaggtgtttgagaatgccatatatatacttttaatgttataatctcgtctgaagttcgagatgttaactgcagaaatcctagaatctgaaataaccattgtgcttatttgaatctttcgctaagtttagtatcaaataagcacattgggttcaaagtatattaaatcagcaccttatgttcatatattgtgcatataaaatgtgcattgtgttcttctcctgatttaatgctttgctttgctttcagccctgtcccatctgcttcgaaaagattacaagagatatgttaaatcatatcaccatgcaacatggttacttgttcaaggttaatctccttccatacctattctgttgcacaagcatatgctaattctttgataaattttcttaattatttaggaatgttctgattcctttttcaaaattatttgtgatgtacagagtggtcgcaggatgcgcagattcgttattcccgagagccaggcactttctttactgagccgagatctgcgggatgctcagttacaggcacttctaggaggtggtcatcgtcagcgaagaagcaacactactgccacaaacatttctgctgatcctctgctttcttcgtttggcctgggcttctcaacattggattcagaggaacgatcaaaagcaccagttcctattcgtgatgatacatcaattcataaggatactcctgctcagccatgggaatcaaggtatatatatttacactgctcagccgaatcacattagtggcctgatattcttccacctaaaaccccactactaacagcattacttcaagaatcatcctagtttgtctggaaagcatagcaaacactattgagtattagccaattagttcccatgtcctgccatgctctatgatttatttttcagctagcactttcacaaactgttcacagttaccttcttgtctgagacaggtactgtcaattttgttacatatgtcagaaagactatcaaccaccagttaaacagttgtgtccttgtgattttttagactgttcactagctgtacgcttttacatttgatgaaaacagtccatattatgtcaatgaattgttaagtagctctaagattgaccatattcacaactataaaggtctacataatacttgccgtttcccctagcattcagatggtcagaccaattaggtaaagtagagcattcaggtctatatatgtgctcagttagtatgtttcaaaccagcagcttataaactccttaagagatatgcaaatatgaaatatttattttttccatggcaggatcgactcatcgctcacgagtgaggaaagggaacaaaagcggaaacaagccactgacagagcaacctttgtgcaaggcctggtgctctccactttatttgaagactgactgttcaagtagccctagtttttcttgctagatgcatgtttcctctcgctggttcccataaaagcgcaatgttccacccgatttggtgaatctgatttcgtcaacagtgagatggatgtgcttctggtgccccgttgttctttcgcttcagtaaagcgcgaagttgatttgggcatgatacacaccttaatttatgtcagctgccctgtaccattgctttttatgaattaacgggtagccacaccttgactgtaactcgttgttgtacctctccatactgtctaggaacattggtttgtacaaacataaaagctgttacatgttgtacaatgcaaaggcaaatgcagaagcaccgtttatatcgaatcaactc
More
|
||||||||||
| CDS seq | atggactcggagcactggatctcgagcctcgccgccgccaagcggttctacgcggcgcagctcggtcacgtcgacgatatggcggggattggaatggaggaggtggagatggagatggaggatgatggcgagggcatggagctggagctggagatgcagctggaggaggcgacgtggccggacgtggcctgcccctactgctacgaggaccacgacatcgcgtccctctgcgcccacctcgaggaggaccacccctacgagccccacaccgcgccctgtcccatctgcttcgaaaagattacaagagatatgttaaatcatatcaccatgcaacatggttacttgttcaagagtggtcgcaggatgcgcagattcgttattcccgagagccaggcactttctttactgagccgagatctgcgggatgctcagttacaggcacttctaggaggtggtcatcgtcagcgaagaagcaacactactgccacaaacatttctgctgatcctctgctttcttcgtttggcctgggcttctcaacattggattcagaggaacgatcaaaagcaccagttcctattcgtgatgatacatcaattcataaggatactcctgctcagccatgggaatcaaggatcgactcatcgctcacgagtgaggaaagggaacaaaagcggaaacaagccactgacagagcaacctttgtgcaaggcctggtgctctccactttatttgaagactga
More
|
||||||||||
| Protein seq | MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWPDVACPYCYEDHDIASLCAHLEEDHPYEPHTAPCPICFEKITRDMLNHITMQHGYLFKSGRRMRRFVIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSFGLGFSTLDSEERSKAPVPIRDDTSIHKDTPAQPWESRIDSSLTSEEREQKRKQATDRATFVQGLVLSTLFED |
||||||||||
| Function | Protein DEHYDRATION-INDUCED 19 homolog 3 [UniProtKB/Swiss-Prot:Q5QMP3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0027620 | OsLima_01g0027620.02 | Chr01 | 28945905 | 28949330 | + | NAM | ||
| CDS seq | atggactcggagcactggatctcgagcctcgccgccgccaagcggttctacgcggcgcagctcggtcacgtcgacgatatggcggggattggaatggaggaggtggagatggagatggaggatgatggcgagggcatggagctggagctggagatgcagctggaggaggcgacgtggccggacgtggcctgcccctactgctacgaggaccacgacatcgcgtccctctgcgcccacctcgaggaggaccacccctacgagccccacaccgcggtgagctcctcgccgccatgccctgcgccgcagggctccttgctctga
More
|
|||||||
| Protein seq | MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWPDVACPYCYEDHDIASLCAHLEEDHPYEPHTAVSSSPPCPAPQGSLL |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0027620 | OsLima_01g0027620.03 | Chr01 | 28947467 | 28949330 | + | NAM | ||
| CDS seq | atgccctgtcccatctgcttcgaaaagattacaagagatatgttaaatcatatcaccatgcaacatggttacttgttcaagagtggtcgcaggatgcgcagattcgttattcccgagagccaggcactttctttactgagccgagatctgcgggatgctcagttacaggcacttctaggaggtggtcatcgtcagcgaagaagcaacactactgccacaaacatttctgctgatcctctgctttcttcgtttggcctgggcttctcaacattggattcagaggaacgatcaaaagcaccagttcctattcgtgatgatacatcaattcataaggatactcctgctcagccatgggaatcaaggatcgactcatcgctcacgagtgaggaaagggaacaaaagcggaaacaagccactgacagagcaacctttgtgcaaggcctggtgctctccactttatttgaagactga
More
|
|||||||
| Protein seq | MPCPICFEKITRDMLNHITMQHGYLFKSGRRMRRFVIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSFGLGFSTLDSEERSKAPVPIRDDTSIHKDTPAQPWESRIDSSLTSEEREQKRKQATDRATFVQGLVLSTLFED |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0027620 | OsLima_01g0027620.01 | Chr01 | 28945905 | 28949335 | + | NAM | ||
| CDS seq | atggactcggagcactggatctcgagcctcgccgccgccaagcggttctacgcggcgcagctcggtcacgtcgacgatatggcggggattggaatggaggaggtggagatggagatggaggatgatggcgagggcatggagctggagctggagatgcagctggaggaggcgacgtggccggacgtggcctgcccctactgctacgaggaccacgacatcgcgtccctctgcgcccacctcgaggaggaccacccctacgagccccacaccgcgccctgtcccatctgcttcgaaaagattacaagagatatgttaaatcatatcaccatgcaacatggttacttgttcaagagtggtcgcaggatgcgcagattcgttattcccgagagccaggcactttctttactgagccgagatctgcgggatgctcagttacaggcacttctaggaggtggtcatcgtcagcgaagaagcaacactactgccacaaacatttctgctgatcctctgctttcttcgtttggcctgggcttctcaacattggattcagaggaacgatcaaaagcaccagttcctattcgtgatgatacatcaattcataaggatactcctgctcagccatgggaatcaaggatcgactcatcgctcacgagtgaggaaagggaacaaaagcggaaacaagccactgacagagcaacctttgtgcaaggcctggtgctctccactttatttgaagactga
More
|
|||||||
| Protein seq | MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWPDVACPYCYEDHDIASLCAHLEEDHPYEPHTAPCPICFEKITRDMLNHITMQHGYLFKSGRRMRRFVIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSFGLGFSTLDSEERSKAPVPIRDDTSIHKDTPAQPWESRIDSSLTSEEREQKRKQATDRATFVQGLVLSTLFED
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 28946458 | 28947878 | + | OsLima_01g0027620.02 | OsLima_01g0027620.02,OsLima_01g0027620.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.769171 | 0.563109 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0672400 | RBH | 9.115913 | 5.223085 | 6.474442 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48190 | RBH | 5.655061 | 3.841460 | 1.666499 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0672400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028700 | RBH | 1.963483 | 31.535599 | 4.352633 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028230 | RBH | 0.337008 | 3.988233 | 2.342897 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028680 | RBH | 3.663133 | 52.295818 | 5.921241 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027850 | RBH | 0.484360 | 1.168665 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027600 | RBH | 19.746859 | 46.395092 | 22.947481 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0459400 | RBH | 22.7974765 | 122.680389 | 28.612294 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027320 | RBH | 1.139684 | 3.127777 | 0.801600 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0448000 | RBH | 29.1724625 | 122.900879 | 14.622936 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0026490 | RBH | 1.526147 | 0.903582 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027480 | RBH | 3.165417 | 18.972528 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027800 | RBH | 16.400558 | 63.428074 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027920 | RBH | 2.286885 | 3.415648 | 1.907122 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027670 | RBH | 1.390468 | 25.168253 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028140 | RBH | 2.020241 | 9.443319 | 5.496531 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027820 | RBH | 2.657435 | 26.020185 | 6.126274 |
