Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0026080 | OGI:05074880 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:28728345-28732187 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atatgaaacgttgtgaagttctctaaatcatttacatgcatcccctaaaatgccattcgtcatttctgcttgcaaaacatttccattcgctgtacgcacattcctgccccccccctcttttttttttgtttctttgagaacccgttgcattaacactttttaattaatacgatcgcaaaatcaccaattacaataattgaataatatctgcatcaatagactGgtcattgggtgcagctcgtctgcctgaacctgagccaccgattgttgaggtcgaactcccagaggtgctcctgctgcaggatgttgccgatcacggacacccccggccacgccccctcctgcaccccgatgcacttcacgccGggcgccgcgtcgatcacgtagctcttcgccggcggctccagcctcgccgacccggcgaactgcaccgccagcttcggcacggcgaggtcgccgccgccgtcgccgcgggccgtccagttgtagcagtagtcgaacgggtccatggccacgcgcggcagcccggcgagctgctcgctcagcgccgccaccaccgccttgtacgccggcgtggcgagcaccgtcaggctcgtgccggagtcgatgatggtgccgccgttgctgccgacgtcccacacctcggcggggatgtcgagcgccacgccgtcgacggagacggagtcgaccgccacggcgtagaaggggcggacgcgggcgtcgagcagcagcggcgtccgcgagcccggcgccggcgccgacgacgacgccgcgtccgggccggcgccgaaggtgaggtagctggtggcgttgcgcggggcgaggtggtcgacgaggcagtaggagaagcggccgccgaaccgcgacgcggcgcgcgacgcgaacgagatgttgctgtagccgaggctgagcacgccgtcggacgcctcgaacccctggccggcgtgcgccgtggtgcaccccagcaccaccccctgcagcttcgccttccggtcgccgccgccgccgccgccgcgcccgccggagagcgccaccgtcgccgagtcggtgcccaccacgccgcgcgccgccgagttgtcgttgtacctgcccaccaccaacgcgttagccaccgttagttaagatccatgcacatgctaagattcgtgcgctaaattacacacaccaaaaaaaaactgccaaactttagaactaatgagtaataatatttttagcccaaaatgtacacttggttactactagattagaactgatcgtgatatgactttgggacctggcttttctacaaagaaccggcttgtaagttactcatcttctacatgatctgtatcagaatcatggaacaggtaagacatatcttttcatgaactgtaaagcacagggaaaagactagccgagattgcagcgttatctcggcagctcattcacatcgtctacgccggccaagtgatgaccagtctgtcgtcgacaaagaacagtaaggtgaatgaatctgactggcagtatcaacatcatgaagtcggtataattagttatttattatgccttttaaccttaaaaattcaagataagcatccagcaaaggagagcagaacggtagtactcctgactcctgagcagtagctttgccgttttcatatttggagttgggttattctaggagtactagctagtacagccactgcagttagtgtaaaacagctgcaaactattaaaaaaaactcagttggatatacagagatcatacagaacatggccacaatttggatatggtcagtcagacaggttgaattaactgctaacgtgcctggtttagtacaccggctaactttgggtttaaggtaaccgttacactattatacgacagtgatatataggtcgttcacgacggtcagagcaaactgcaaaggttggcaattcaatacgggcttcagtcaatcagccgcgtttacagttgcagcatttctctgaatatttcctgctccgttctccgcgaCGcgtgcagagcccgaggcgctgcgtacggcgcgcacatggcgcgcgcccccggccgcccactgcccactgttcggcgcgcggtgtcgcgcgccaactcgccccacttgcgcttccggggacgagaagcgacagcgcatcggcgctcgcgaacgcgaacgcgcgaccagccgtagccgatcgtgcggcgacgtgcccggcgcggcgcgcgcgcgctctcgcCACGacacgccacgccgcggcgcggcgtcgtgcgcggccagcagatgagctcagtaaatgtgtgacattaagggcctatttggttctctaccctaccaattaattggtagtaccaaaatctaggcaaattttggcactaccaattttttggtagagcaaagttaactaatctatgtttggtttaataccaatacaaagctaaaatttagtatgagagtgaagaagattctagaatgtagccaaattgagcgtgggcactaccAattgtttggcttcaatccaaactagcatgtttactattaaagttaccaaaattttggtagggtgcttcaatccaaaacgaccctaaaatcgggctcagctccgaccaagaagaccataaaaaaagtcacgcgaaaattactgcagattgcagagtaccacgctccgtacgagctgtcgtgctactgtagaactaggactactcctgcttgcttcagctgcgcgcagttaatggggtttcgatcagcgcagcagcagatggagacgaaggaaaaaacccgcgaaatttatggcgcgcaagcgagatcccgacccacccaacaacccggcacttactacggctgcgctgcacacgcacgcacgagccacgagcacgaggatcactgcattgtgagatgagatctacgcgcgcgtcaatggagatggaatcatggcaatggcaatggcaatggcgaggagagGAgaggatactgaccggtagtcgtaggagcaggcggcggtggagctggagcagttggcGAGggagaaGGggatggtcgacttgcacgtctccgacgagcacgggatgggcgaccacgtcttggagtcgccgggacggaacacccgtggcggcgccaccgccggagacggcgccgccgctggcgaggcggtggcggtggcgtgactgggagaggcggcgccgcggcacttgacccaggtgaggtcgctgccggtgtcggcgatgaggacgaacggctgcgccggggtgcccacgcggaaccgcacgaagtactgccccgtgccgGTgtacgcccccgacgacagcggcatcgcgaacgccgacgccgccaccgccccggccgacgacaccgacgaggtctcctccgctcgccgccgccgccgcgacgccgcgagcctggcggagatgtactcgtgccgccgcctgtcatccctcgcccgctcggccatcgacgcgcccggggcagccGggaccagctgcagcctcgccgacttgcccgggcgtccgcgactgtgccccccaccgctcgccgccgacgccgccgccgccgccacggcgagacaaaccacgaccatcaacaccaccttcccgcgcgccattcctccttcctcctcgcccgatcacctcacgtcgtccccaatgcgcgaggcgacgcacaagaagaaaccaagaaacgcacgcagctcctgctcctgctccctcctcctagaccacgacacgagctgccattgtcgccgtcgcgctttgccgagacacaccgcagcaatcaaacactcggcggctgctctgctctgcttcgaaatGGAggaggagattttcagctgcggctagctaagcggaggccgctttttggctgtgtccggcac
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| CDS seq | atggcgcgcgggaaggtggtgttgatggtcgtggtttgtctcgccgtggcggcggcggcggcgtcggcggcgagcggtggggggcacagtcgcggacgcccgggcaagtcggcgaggctgcagctggtccCggctgccccgggcgcgtcgatggccgagcgggcgagggatgacaggcggcggcacgagtacatctccgccaggctcgcggcgtcgcggcggcggcggcgagcggaggagacctcgtcggtgtcgtcggccggggcggtggcggcgtcggcgttcgcgatgccgctgtcgtcgggggcgtacACcggcacggggcagtacttcgtgcggttccgcgtgggcaccccggcgcagccgttcgtcctcatcgccgacaccggcagcgacctcacctgggtcaagtgccgcggcgccgcctctcccagtcacgccaccgccaccgcctcgccagcggcggcgccgtctccggcggtggcgccgccacgggtgttccgtcccggcgactccaagacgtggtcgcccatcccgtgctcgtcggagacgtgcaagtcgaccatccCCttctccCTCgccaactgctccagctccaccgccgcctgctcctacgactaccggtacaacgacaactcggcggcgcgcggcgtggtgggcaccgactcggcgacggtggcgctctccggcgggcgcggcggcggcggcggcggcgaccggaaggcgaagctgcagggggtggtgctggggtgcaccacggcgcacgccggccaggggttcgaggcgtccgacggcgtgctcagcctcggctacagcaacatctcgttcgcgtcgcgcgccgcgtcgcggttcggcggccgcttctcctactgcctcgtcgaccacctcgccccgcgcaacgccaccagctacctcaccttcggcgccggcccggacgcggcgtcgtcgtcggcgccggcgccgggctcgcggacgccgctgctgctcgacgcccgcgtccgccccttctacgccgtggcggtcgactccgtctccgtcgacggcgtggcgctcgacatccccgccgaggtgtgggacgtcggcagcaacggcggcaccatcatcgactccggcacgagcctgacggtgctcgccacgccggcgtacaaggcggtggtggcggcgctgagcgagcagctcgccgggctgccgcgcgtggccatggacccgttcgactactgctacaactggacggcccgcggcgacggcggcggcgacctcgccgtgccgaagctggcggtgcagttcgccgggtcggcgaggctggagccgccggcgaagagctacgtgatcgacgcggcgccCggcgtgaagtgcatcggggtgcaggagggggcgtggccgggggtgtccgtgatcggcaacatcctgcagcaggagcacctctgggagttcgacctcaacaatcggtggctcaggttcaggcagacgagctgcacccaatga
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| Protein seq | MARGKVVLMVVVCLAVAAAAASAASGGGHSRGRPGKSARLQLVPAAPGASMAERARDDRRRHEYISARLAASRRRRRAEETSSVSSAGAVAASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFVLIADTGSDLTWVKCRGAASPSHATATASPAAAPSPAVAPPRVFRPGDSKTWSPIPCSSETCKSTIPFSLANCSSSTAACSYDYRYNDNSAARGVVGTDSATVALSGGRGGGGGGDRKAKLQGVVLGCTTAHAGQGFEASDGVLSLGYSNISFASRAASRFGGRFSYCLVDHLAPRNATSYLTFGAGPDAASSSAPAPGSRTPLLLDARVRPFYAVAVDSVSVDGVALDIPAEVWDVGSNGGTIIDSGTSLTVLATPAYKAVVAALSEQLAGLPRVAMDPFDYCYNWTARGDGGGDLAVPKLAVQFAGSARLEPPAKSYVIDAAPGVKCIGVQEGAWPGVSVIGNILQQEHLWEFDLNNRWLRFRQTSCTQ |
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| Function | Aspartic proteinase NANA, chloroplast [UniProtKB/Swiss-Prot:Q9LTW4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0026080 | OsLima_05g0026080.01 | Chr05 | 28728345 | 28732187 | - | NAM | ||
| CDS seq | atggcgcgcgggaaggtggtgttgatggtcgtggtttgtctcgccgtggcggcggcggcggcgtcggcggcgagcggtggggggcacagtcgcggacgcccgggcaagtcggcgaggctgcagctggtccCggctgccccgggcgcgtcgatggccgagcgggcgagggatgacaggcggcggcacgagtacatctccgccaggctcgcggcgtcgcggcggcggcggcgagcggaggagacctcgtcggtgtcgtcggccggggcggtggcggcgtcggcgttcgcgatgccgctgtcgtcgggggcgtacACcggcacggggcagtacttcgtgcggttccgcgtgggcaccccggcgcagccgttcgtcctcatcgccgacaccggcagcgacctcacctgggtcaagtgccgcggcgccgcctctcccagtcacgccaccgccaccgcctcgccagcggcggcgccgtctccggcggtggcgccgccacgggtgttccgtcccggcgactccaagacgtggtcgcccatcccgtgctcgtcggagacgtgcaagtcgaccatccCCttctccCTCgccaactgctccagctccaccgccgcctgctcctacgactaccggtacaacgacaactcggcggcgcgcggcgtggtgggcaccgactcggcgacggtggcgctctccggcgggcgcggcggcggcggcggcggcgaccggaaggcgaagctgcagggggtggtgctggggtgcaccacggcgcacgccggccaggggttcgaggcgtccgacggcgtgctcagcctcggctacagcaacatctcgttcgcgtcgcgcgccgcgtcgcggttcggcggccgcttctcctactgcctcgtcgaccacctcgccccgcgcaacgccaccagctacctcaccttcggcgccggcccggacgcggcgtcgtcgtcggcgccggcgccgggctcgcggacgccgctgctgctcgacgcccgcgtccgccccttctacgccgtggcggtcgactccgtctccgtcgacggcgtggcgctcgacatccccgccgaggtgtgggacgtcggcagcaacggcggcaccatcatcgactccggcacgagcctgacggtgctcgccacgccggcgtacaaggcggtggtggcggcgctgagcgagcagctcgccgggctgccgcgcgtggccatggacccgttcgactactgctacaactggacggcccgcggcgacggcggcggcgacctcgccgtgccgaagctggcggtgcagttcgccgggtcggcgaggctggagccgccggcgaagagctacgtgatcgacgcggcgccCggcgtgaagtgcatcggggtgcaggagggggcgtggccgggggtgtccgtgatcggcaacatcctgcagcaggagcacctctgggagttcgacctcaacaatcggtggctcaggttcaggcagacgagctgcacccaatga
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| Protein seq | MARGKVVLMVVVCLAVAAAAASAASGGGHSRGRPGKSARLQLVPAAPGASMAERARDDRRRHEYISARLAASRRRRRAEETSSVSSAGAVAASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFVLIADTGSDLTWVKCRGAASPSHATATASPAAAPSPAVAPPRVFRPGDSKTWSPIPCSSETCKSTIPFSLANCSSSTAACSYDYRYNDNSAARGVVGTDSATVALSGGRGGGGGGDRKAKLQGVVLGCTTAHAGQGFEASDGVLSLGYSNISFASRAASRFGGRFSYCLVDHLAPRNATSYLTFGAGPDAASSSAPAPGSRTPLLLDARVRPFYAVAVDSVSVDGVALDIPAEVWDVGSNGGTIIDSGTSLTVLATPAYKAVVAALSEQLAGLPRVAMDPFDYCYNWTARGDGGGDLAVPKLAVQFAGSARLEPPAKSYVIDAAPGVKCIGVQEGAWPGVSVIGNILQQEHLWEFDLNNRWLRFRQTSCTQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.184477 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0557100 | RBH | 0.0 | 0.000000 | 0.950151 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48330 | RBH | 0.0 | 0.000000 | 0.232034 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0557100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026460 | RBH | 0.095899 | 6.601322 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026250 | RBH | 0.061218 | 0.541061 | 0.393561 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026250 | RBH | 0.215420 | 7.318127 | 0.338670 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026290 | RBH | 0.0 | 0.464648 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026250 | RBH | 0.000000 | 23.127924 | 1.250344 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0430500 | RBH | 1.5836625 | 7.014192 | 4.6293855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025880 | RBH | 0.000000 | 1.151717 | 0.248728 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0441700 | RBH | 2.404969 | 5.4058355 | 3.277876 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028030 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025960 | RBH | 0.0 | 11.956599 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026150 | RBH | 0.0 | 9.557387 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026190 | RBH | 0.0 | 1.231022 | 0.397496 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026210 | RBH | 0.0 | 8.224136 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025690 | RBH | 0.0 | 1.770812 | 1.681668 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026220 | RBH | 0.000000 | 2.306448 | 0.000000 |
