Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0028030 | OGI:01084920 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:29351393-29355957 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgggccgccgccgcgtggtggtgctggtggtggcggcagcgctgttggtcgccgtggcctcggccggcgcgagcggcaagtcggcgcggttcgagctgctccggctcgcgccggcggcgtccctggccgacctggcgcgcatggaccgggagcggatggcgttcatctcgtcgcgcgggcggcgccgcgcggcggagaccgcgtccgccttcgcgatgccgctctcctccggcgcgtacaccgggacgggccagtacttcgtgcgcttccgcgtgggcaccccggcgcagccgttcctgctcgtcgccgacaccggcagcgacctcacctgggtcaagtgccaccgcgccgccgccgccgcctccgcctcccccagaaacgcctcctccctcccggcgcctgcgccggcctcccctcgccgcacgttccggccggacaagtcccggacgtgggcgcccatcccgtgctcgtccgccacctgcagggagtccctccccttctccctcgccgcctgcgccacccccgccaacccctgcgcctacgactaccggtcagtgtcccactcccaccaccaccattctctcttcttcttcctcatcatccgcattcgcattcgcatttgctcctccctaatacaaaaacgttagcccgcgtaatgcgatttcaatggcgatcgatcggtccgggtggggcgcggttcggtcatggcattgatgagatgcgagcagcagcagctgctgcaattagtggctggttggtgggcgagtcggatctctccacgccaaggccatccatggcaatggcagacgccgcggggccgcgattaatgcggcgccattgatgcacgcagccctgctcttctctgggcagcagctccggcctgtctcccctgcgtgcgtacacattacccttcttgtccagttcaaagcactaaaaataccattgtagtagaatacttctacatcatcgcaactcctcctgtgacgatggagacggaaccgaagtctttctgatcgcaactccggtcgattctgccgctggtttttttgggtcggaggcgtcgtcggatcgtcgctttctcGgggagcacattgaatgcgtcgacgacctgtcatgtgggctttgctctgcttgcccacacgcgttcgttcactcatcgcgtcttcttctcgtatatgctttttcccccgctaataatccgagctgtcacgggcacacgcgcgaggccatccatcatccatgatccatcatcgcttctgctctctggaaagcgattttagccgaatcacgccttgatgctgatctccgagctctgaaaagcgagagctttactcgacagagagaccgatcacatcacctccatctgttctctgctgcattggatcctagacaccggagaaaaggacgcacctcccatctcgccacaggatatcgatatgcatgcctgcctgcctgcccggccgtcctccgtgtactactatttgtttgctgctgcatgcacgttgccggtggtcattcctaggccagccaattgttgtttacttgggtttttttatgcactggaacaaaaagaagaggcacaacgacgtcgtagaacggcaggcagcaacagcgatagctaaaaaactgcggttcatcgagcatggtgtggctgctggcagcagtgctcggctttgtttttcctcccttcgccatgtgcacggtggattgggctgtactccatcagtgtctgctactgtgtcaggatatcgaacatattcctttataggattaaagtggaggttgtaagcatctgcttactagatcacgtaatcatccaagcgtttatcttttgttttcgttgccaccaagagatgtacgcatgatcatcatcgatttcaaaatagcatactctaattattcagcctttgggattccacaaaaaacactgtggactctcgagactggataggcgttatggagacatggagttctttgtggtacacaacaaggtgtcccacgaaaccggccaaaagaacagcaagagaccgcccacattgtcatacatacgtacgttttggatttttgctttgttgtgaacatgcgagttgtagactgctcttctactggtaatcacgttctttcgcctgtatgcctatctgtcaaagaagatatcatgtgccgagttggggtttgtactttttacgacccaaaatcaaattacttttagtctgcaacaataatgttggattttactagtatcaatcccccttttattctgcatcaaaggacgtcgacatgggtaatctgcgcaaaaacaaaacataacttgtttcttacatagtcttcgctatctactctcaaatgatctatattagtcctcttggggagaggggaaatatgtagccccacgtgagtattgtcttagtgttggaccatacctgggcggttgggccacgttctccttggtcaaagcatgctttgaccgtcataaattagctaaccctccggtccaaatgtaactgtactacctgaagatcccggttcttttaaaaaacataactatagtagtaccttggaatggagttgagctgctactcaagtactatcatttgcaccgtgccaccgtccatctcatgatctttgagacatgcgtctgcttagggggtttttgggagagaggggtgtgagaggtcccaaacaccctcttaatcaggttggcattgtggacttgacactgctgatgttagggcatctcgatctggtctctgctgtgccactgccatgttaggtctatgcgatacagttcatgagaagacatggcttttccactagctcaatgattgtgctgtagaggattgcattttgcttcaaggatgtgttactagcttgcaggacagcccttgtgcaccacttgtgttgcctttcaagtgctgcccaattcaagcatactgcatacagtgcacggatgcatgcgaaaatacctacttccttagtcctacgatataagggattttgaatttttgattgtaacgtttgaccactcgtcttatttatttttttttcaaatataaaaaacgaaaagttgtgtttaaagtactgtagataataaagcaagtcacaaataaaataaataataatttaaaaaaaatttaaataagacgagtggtcaaacgttataagtaaaaactcaaaatcccttatattatgggacggagggagtaacttttttttttcttcgcgtgttttttatttgaaagtaatcacttggtcaatttggttgtcttcaggagattggtttgatggcataagattagctgcaatttgcaatgttttgttaagtcgatacctcgatgatggctaagagagttcacgcgatccttgaatcgcgccatgcgccatgcacgtaattaaaccgtggcgtattttgacttgctcggcggcacgcaggtacaaggacgggtcggcggcgcgcggcacggtgggcgtcgactcggcgaccatcgcgctgtcggggcgcgcggcgaggaaggcgaagctgcgcggcgtcgtgctgggctgcaccacctcctacaacggccagagcttcctggcctccgacggcgtgctcagcctcggctacagcaacatctccttcgcgtcgcgcgccgcgtcgcgcttcggcggccgcttctcctactgcctcgtcgaccacctcgccccgcggaacgccaccagctacctcaccttcgggcccaacccggcgttctcctcgcggcgcccgtcggagggcatcgcctcgtgcaagcctgcgcctgcgcccacgcccgcccccgcaggcgcgcccggcgcgcgccagacgccgctggtgctcgaccaccggacgcgccccttctacgcggtcaccgtcaagggcgtctccgtcgccggggagctgctcaagatcccgcgcgccgtctgggacgtcgagcagggcggcggcgccatcctcgactccggcacgagcctgacgatgctggccaagccggcgtaccgcgccgtggtggcggcgctgagcaagaggctcgcggggctacccagggtgaccatggacccgttcgactactgctacaactggacgtcgccgtcgggcagcgacgtcgccgcgccgttgccaatgctggccgtgcacttcgccgggtcggcgcgcctggagccgccggcgaagagctacgtgatcgacgcggcgcccggggtgaagtgcatcggcttgcaggagggcccgtggccgggcctgtccgtcatcggcaacatcctgcagcaggagcacctctgggagtacgatctgaagaaccgacggctcagattcaagaggtcgcggtgcatgcactgattcaacggtgccgatcactccctccacttcttttattttttttctccgtgtggtggtggtctggctggtttttttttttgttttattttacgccgtgttcagatactaatgcaatgagaaaatgtatcaagcaaaaaatggtaatctgtaataagttttccttttcttttctttcacccatctgttcttctcattccgatgaatataagtgtatagattttctccgtgcaa
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| CDS seq | atggcgggccgccgccgcgtggtggtgctggtggtggcggcagcgctgttggtcgccgtggcctcggccggcgcgagcggcaagtcggcgcggttcgagctgctccggctcgcgccggcggcgtccctggccgacctggcgcgcatggaccgggagcggatggcgttcatctcgtcgcgcgggcggcgccgcgcggcggagaccgcgtccgccttcgcgatgccgctctcctccggcgcgtacaccgggacgggccagtacttcgtgcgcttccgcgtgggcaccccggcgcagccgttcctgctcgtcgccgacaccggcagcgacctcacctgggtcaagtgccaccgcgccgccgccgccgcctccgcctcccccagaaacgcctcctccctcccggcgcctgcgccggcctcccctcgccgcacgttccggccggacaagtcccggacgtgggcgcccatcccgtgctcgtccgccacctgcagggagtccctccccttctccctcgccgcctgcgccacccccgccaacccctgcgcctacgactaccggtacaaggacgggtcggcggcgcgcggcacggtgggcgtcgactcggcgaccatcgcgctgtcggggcgcgcggcgaggaaggcgaagctgcgcggcgtcgtgctgggctgcaccacctcctacaacggccagagcttcctggcctccgacggcgtgctcagcctcggctacagcaacatctccttcgcgtcgcgcgccgcgtcgcgcttcggcggccgcttctcctactgcctcgtcgaccacctcgccccgcggaacgccaccagctacctcaccttcgggcccaacccggcgttctcctcgcggcgcccgtcggagggcatcgcctcgtgcaagcctgcgcctgcgcccacgcccgcccccgcaggcgcgcccggcgcgcgccagacgccgctggtgctcgaccaccggacgcgccccttctacgcggtcaccgtcaagggcgtctccgtcgccggggagctgctcaagatcccgcgcgccgtctgggacgtcgagcagggcggcggcgccatcctcgactccggcacgagcctgacgatgctggccaagccggcgtaccgcgccgtggtggcggcgctgagcaagaggctcgcggggctacccagggtgaccatggacccgttcgactactgctacaactggacgtcgccgtcgggcagcgacgtcgccgcgccgttgccaatgctggccgtgcacttcgccgggtcggcgcgcctggagccgccggcgaagagctacgtgatcgacgcggcgcccggggtgaagtgcatcggcttgcaggagggcccgtggccgggcctgtccgtcatcggcaacatcctgcagcaggagcacctctgggagtacgatctgaagaaccgacggctcagattcaagaggtcgcggtgcatgcactga
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| Protein seq | MAGRRRVVVLVVAAALLVAVASAGASGKSARFELLRLAPAASLADLARMDRERMAFISSRGRRRAAETASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFLLVADTGSDLTWVKCHRAAAAASASPRNASSLPAPAPASPRRTFRPDKSRTWAPIPCSSATCRESLPFSLAACATPANPCAYDYRYKDGSAARGTVGVDSATIALSGRAARKAKLRGVVLGCTTSYNGQSFLASDGVLSLGYSNISFASRAASRFGGRFSYCLVDHLAPRNATSYLTFGPNPAFSSRRPSEGIASCKPAPAPTPAPAGAPGARQTPLVLDHRTRPFYAVTVKGVSVAGELLKIPRAVWDVEQGGGAILDSGTSLTMLAKPAYRAVVAALSKRLAGLPRVTMDPFDYCYNWTSPSGSDVAAPLPMLAVHFAGSARLEPPAKSYVIDAAPGVKCIGLQEGPWPGLSVIGNILQQEHLWEYDLKNRRLRFKRSRCMH |
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| Function | Aspartic proteinase NANA, chloroplast [UniProtKB/Swiss-Prot:Q9LTW4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0028030 | OsLima_01g0028030.01 | Chr01 | 29351393 | 29355957 | + | NAM | ||
| CDS seq | atggcgggccgccgccgcgtggtggtgctggtggtggcggcagcgctgttggtcgccgtggcctcggccggcgcgagcggcaagtcggcgcggttcgagctgctccggctcgcgccggcggcgtccctggccgacctggcgcgcatggaccgggagcggatggcgttcatctcgtcgcgcgggcggcgccgcgcggcggagaccgcgtccgccttcgcgatgccgctctcctccggcgcgtacaccgggacgggccagtacttcgtgcgcttccgcgtgggcaccccggcgcagccgttcctgctcgtcgccgacaccggcagcgacctcacctgggtcaagtgccaccgcgccgccgccgccgcctccgcctcccccagaaacgcctcctccctcccggcgcctgcgccggcctcccctcgccgcacgttccggccggacaagtcccggacgtgggcgcccatcccgtgctcgtccgccacctgcagggagtccctccccttctccctcgccgcctgcgccacccccgccaacccctgcgcctacgactaccggtacaaggacgggtcggcggcgcgcggcacggtgggcgtcgactcggcgaccatcgcgctgtcggggcgcgcggcgaggaaggcgaagctgcgcggcgtcgtgctgggctgcaccacctcctacaacggccagagcttcctggcctccgacggcgtgctcagcctcggctacagcaacatctccttcgcgtcgcgcgccgcgtcgcgcttcggcggccgcttctcctactgcctcgtcgaccacctcgccccgcggaacgccaccagctacctcaccttcgggcccaacccggcgttctcctcgcggcgcccgtcggagggcatcgcctcgtgcaagcctgcgcctgcgcccacgcccgcccccgcaggcgcgcccggcgcgcgccagacgccgctggtgctcgaccaccggacgcgccccttctacgcggtcaccgtcaagggcgtctccgtcgccggggagctgctcaagatcccgcgcgccgtctgggacgtcgagcagggcggcggcgccatcctcgactccggcacgagcctgacgatgctggccaagccggcgtaccgcgccgtggtggcggcgctgagcaagaggctcgcggggctacccagggtgaccatggacccgttcgactactgctacaactggacgtcgccgtcgggcagcgacgtcgccgcgccgttgccaatgctggccgtgcacttcgccgggtcggcgcgcctggagccgccggcgaagagctacgtgatcgacgcggcgcccggggtgaagtgcatcggcttgcaggagggcccgtggccgggcctgtccgtcatcggcaacatcctgcagcaggagcacctctgggagtacgatctgaagaaccgacggctcagattcaagaggtcgcggtgcatgcactga
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| Protein seq | MAGRRRVVVLVVAAALLVAVASAGASGKSARFELLRLAPAASLADLARMDRERMAFISSRGRRRAAETASAFAMPLSSGAYTGTGQYFVRFRVGTPAQPFLLVADTGSDLTWVKCHRAAAAASASPRNASSLPAPAPASPRRTFRPDKSRTWAPIPCSSATCRESLPFSLAACATPANPCAYDYRYKDGSAARGTVGVDSATIALSGRAARKAKLRGVVLGCTTSYNGQSFLASDGVLSLGYSNISFASRAASRFGGRFSYCLVDHLAPRNATSYLTFGPNPAFSSRRPSEGIASCKPAPAPTPAPAGAPGARQTPLVLDHRTRPFYAVTVKGVSVAGELLKIPRAVWDVEQGGGAILDSGTSLTMLAKPAYRAVVAALSKRLAGLPRVTMDPFDYCYNWTSPSGSDVAAPLPMLAVHFAGSARLEPPAKSYVIDAAPGVKCIGLQEGPWPGLSVIGNILQQEHLWEYDLKNRRLRFKRSRCMH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0679550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g48750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0679550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029090 | RBH | 0.0 | 1.306836 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028690 | RBH | 0.0 | 1.913536 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029070 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028310 | RBH | 0.0 | 0.219100 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028000 | RBH | 0.0 | 38.310604 | 1.276250 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0465400 | RBH | 1.5051365 | 2.637089 | 10.2381295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027740 | RBH | 0.0 | 0.324035 | 0.062245 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0454200 | RBH | 2.2287765 | 4.169873 | 15.0094555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0026080 | RBH | 0.000000 | 0.184477 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027900 | RBH | 0.0 | 24.124109 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028200 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028360 | RBH | 0.0 | 0.181790 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028120 | RBH | 0.0 | 2.955775 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028600 | RBH | 0.0 | 3.671911 | 0.873671 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028270 | RBH | 0.0 | 2.321344 | 0.0 |
