Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_05g0025570 OGI:05073920 | 16/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr05:28373434-28376476
Gene Symbol OsRFPH2-20
DNA seq

atggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgagtagctcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgCccCGGCCCCGCGCCGGCGGCGGCCGGGGACGTGTGGTGCACGTGCGCTCCCGGGATACCGTTCGCCGCCGAGGCGTCGTCGGTGGACTGCGTCGTGGTGGCGCGCCACCACCACGCCCACCACACGGCGGCGGCGATGGGCTCCGGCCGCCGCGGGGAGGCGGAGCGGCGCCACAGAGAGGTAATCGAATCTCTCCTCGTTTTTTTTTTTTGTTCATGCTAAAAATTTGACCACGATTTCACTTCTCCGTGGTCAAATTCAGTCGTTGTTCATCACTCGTACGGATGTTTTTCTTCATAATTCTGACTGAATTCGTATGCTATCCTGTCGAACTGACCGAAAATTCCTCGGATACAACAGAGGCCGTCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGATCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGGTACACACAAaatccaatgcatgcaactatccaactaatcacaatatttctgcctttctctcacactttcagtcatcagttgcgtctgcaccacacaagtacacacaacttttcaacgcgattatccgtcttgttggtagatgtgtttgtttagatgtcacatgatggcatccgctttgcatgttgttaactaaagctctaaaaaaaacgagatttggagagagagacgtccctccgaacatttgtaagaagaaattgtgagcgtattacggattgaacacgggaccttaaggttgaaatcacacaacccgtgccactgcactgtcaagtacatctcattgttaactaaactctagatggatgcttaattgcaagttcaataataaagaagagggtcgatgcagctttgaaaaatggtagtacaacatgttgatttacatactccggtttggtagtcacggatatgtaggacaggcagcagattggaaggaaggaagagcacatgagagcaaaggggatatggtggtcatgaatagatagatacgttaggtgaagaagagagacctcctttgagtgtagttgcagagtcctctttcttttctgtgtacacgcataaggcataaatgctgaatcattgtgctgaagctgaactcactgaacaaccacgttgctgctggttcttttggtcagcttcagttggctgccatgttgctggaatgagtggtggttgattgtttagtgtttactgttctgttgtaggattggagcatgagcagtgaggagtttgaatgcccaattggtgattagataatcctgtcactttcttcaagtagtagtatgaactgtgagctgacatgcttgtgagggaaacatgcttgcagttaagacagattgaaatgtttagttctgagaaatgagctgtcatatgccacttggttgcttactactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttagtgaatctagacatatatatctatctagattcattaacaacaatatgtgtgagaaatgctagaatgacttacattgtgaaacggaggaagtagaagcgattgtgaacacaatactcaatccgctttagtaagtgatggctccaagttcacaattctcaattagttatgtccaattaagatccaccagtacctttttagcgtatttttgcagaatgtgtgtatctccaaatataacaaacacctcttttcatcttcagttttattaaatcatctttgcaaattgcagatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggtaccctcccatgcccaatatgtgcaacccaaaaaaaaaaaaactttttagtacattaccatcacaaattctccttcatccacccattgttcaatttgataggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaCcccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggtaagcgcaccttccaattcgctattaaccatatagtatcagcatctgttgattagcctaagtccatgtcaacatttcatatctcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatgaaatccaatcagtccctaagcacacttgaactgaaaattgtgaaaaggacttactctttcacagtgtttgtttgtgattgtacagctctgtttgtacatgatgctttgtgtaagcacaagcctgaagcaaaccatctcatttgcatatagaaatttacatgttttcagttttcccagtgtctactgagtgttaagcatttgcttgtagaaacttacatgttttcagttttcccagtgtctactgaatattaattcaggtgaaagaaaaaaaaataagaagagagatttttttttgtttgatgat

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CDS seq

atggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgactcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgCccCGGCCCCGCGCCGGCGGCGGCCGGGGACGTGTGGTGCACGTGCGCTCCCGGGATACCGTTCGCCGCCGAGGCGTCGTCGGTGGACTGCGTCGTGGTGGCGCGCCACCACCACGCCCACCACACGGCGGCGGCGATGGGCTCCGGCCGCCGCGGGGAGGCGGAGCGGCGCCACAGAGAGAGGCCGTCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGATCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaCcccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatga

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Protein seq

MARRDGGASAAEQQRRVALRVLLSRAEASSPPPATVEEEAQRGRSGGGNKGLASAALRGLGCTSTAALRAHAPASAVEVATRSGGTGGGGGGRCRRGGARGAAAEEEEEAWRRPGPAPAAAGDVWCTCAPGIPFAAEASSVDCVVVARHHHAHHTAAAMGSGRRGEAERRHRERPSAPRARRVTMREHISSSLMDSPPFPDMPLLNADLLPPPPSGRHRHGYRHPHVGAAEEEIMMLRTRLLWGRFGMHDQHQDWRLDVDNMTYEELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQEEFEANEETGRLICGHSYHVQCIKQWLSRKNTCPVCKTVVSKT

Function Probable E3 ubiquitin-protein ligase HIP1 [UniProtKB/Swiss-Prot:Q7XTV7]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_05g0025570 OsLima_05g0025570.01 Chr05 28373434 28376476 + NAM
CDS seq

atggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgactcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgCccCGGCCCCGCGCCGGCGGCGGCCGGGGACGTGTGGTGCACGTGCGCTCCCGGGATACCGTTCGCCGCCGAGGCGTCGTCGGTGGACTGCGTCGTGGTGGCGCGCCACCACCACGCCCACCACACGGCGGCGGCGATGGGCTCCGGCCGCCGCGGGGAGGCGGAGCGGCGCCACAGAGAGAGGCCGTCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGATCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaCcccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatga

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Protein seq

MARRDGGASAAEQQRRVALRVLLSRAEASSPPPATVEEEAQRGRSGGGNKGLASAALRGLGCTSTAALRAHAPASAVEVATRSGGTGGGGGGRCRRGGARGAAAEEEEEAWRRPGPAPAAAGDVWCTCAPGIPFAAEASSVDCVVVARHHHAHHTAAAMGSGRRGEAERRHRERPSAPRARRVTMREHISSSLMDSPPFPDMPLLNADLLPPPPSGRHRHGYRHPHVGAAEEEIMMLRTRLLWGRFGMHDQHQDWRLDVDNMTYEELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQEEFEANEETGRLICGHSYHVQCIKQWLSRKNTCPVCKTVVSKT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.549431 0.172684 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0550000 RBH 2.122786 0.651485 0.696817
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g47670 RBH 1.628421 0.488869 0.155532
Nipponbare | IRGSP 1.0 | RAP-db Os05g0550000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0025940 RBH 1.807782 9.953609 4.369500
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0025760 RBH 0.716318 2.222487 0.444966
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0025700 RBH 1.983072 7.446823 4.670587
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0025770 RBH 0.347616 0.080497 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0025730 RBH 2.175543 0.000000 2.281666
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0424200 RBH 13.33413 44.4687215 5.6876595
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0025370 RBH 0.370205 0.670379 0.516117
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0436000 RBH 4.860708 13.8825225 4.7761375
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0028790 RBH 0.112023 0.097760 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0025470 RBH 1.199972 11.394735 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0025670 RBH 4.035936 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0025690 RBH 0.845721 0.000000 1.304493
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0025710 RBH 0.324713 6.597593 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G025150 RBH 0.459779 1.240484 1.490169
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0025690 RBH 1.721470 8.180983 4.406571
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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