Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLima_05g0025570 | OGI:05073920 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:28373434-28376476 | ||||||||
Gene Symbol | OsRFPH2-20 | ||||||||||
DNA seq | atggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgagtagctcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgCccCGGCCCCGCGCCGGCGGCGGCCGGGGACGTGTGGTGCACGTGCGCTCCCGGGATACCGTTCGCCGCCGAGGCGTCGTCGGTGGACTGCGTCGTGGTGGCGCGCCACCACCACGCCCACCACACGGCGGCGGCGATGGGCTCCGGCCGCCGCGGGGAGGCGGAGCGGCGCCACAGAGAGGTAATCGAATCTCTCCTCGTTTTTTTTTTTTGTTCATGCTAAAAATTTGACCACGATTTCACTTCTCCGTGGTCAAATTCAGTCGTTGTTCATCACTCGTACGGATGTTTTTCTTCATAATTCTGACTGAATTCGTATGCTATCCTGTCGAACTGACCGAAAATTCCTCGGATACAACAGAGGCCGTCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGATCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGGTACACACAAaatccaatgcatgcaactatccaactaatcacaatatttctgcctttctctcacactttcagtcatcagttgcgtctgcaccacacaagtacacacaacttttcaacgcgattatccgtcttgttggtagatgtgtttgtttagatgtcacatgatggcatccgctttgcatgttgttaactaaagctctaaaaaaaacgagatttggagagagagacgtccctccgaacatttgtaagaagaaattgtgagcgtattacggattgaacacgggaccttaaggttgaaatcacacaacccgtgccactgcactgtcaagtacatctcattgttaactaaactctagatggatgcttaattgcaagttcaataataaagaagagggtcgatgcagctttgaaaaatggtagtacaacatgttgatttacatactccggtttggtagtcacggatatgtaggacaggcagcagattggaaggaaggaagagcacatgagagcaaaggggatatggtggtcatgaatagatagatacgttaggtgaagaagagagacctcctttgagtgtagttgcagagtcctctttcttttctgtgtacacgcataaggcataaatgctgaatcattgtgctgaagctgaactcactgaacaaccacgttgctgctggttcttttggtcagcttcagttggctgccatgttgctggaatgagtggtggttgattgtttagtgtttactgttctgttgtaggattggagcatgagcagtgaggagtttgaatgcccaattggtgattagataatcctgtcactttcttcaagtagtagtatgaactgtgagctgacatgcttgtgagggaaacatgcttgcagttaagacagattgaaatgtttagttctgagaaatgagctgtcatatgccacttggttgcttactactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttagtgaatctagacatatatatctatctagattcattaacaacaatatgtgtgagaaatgctagaatgacttacattgtgaaacggaggaagtagaagcgattgtgaacacaatactcaatccgctttagtaagtgatggctccaagttcacaattctcaattagttatgtccaattaagatccaccagtacctttttagcgtatttttgcagaatgtgtgtatctccaaatataacaaacacctcttttcatcttcagttttattaaatcatctttgcaaattgcagatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggtaccctcccatgcccaatatgtgcaacccaaaaaaaaaaaaactttttagtacattaccatcacaaattctccttcatccacccattgttcaatttgataggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaCcccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggtaagcgcaccttccaattcgctattaaccatatagtatcagcatctgttgattagcctaagtccatgtcaacatttcatatctcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatgaaatccaatcagtccctaagcacacttgaactgaaaattgtgaaaaggacttactctttcacagtgtttgtttgtgattgtacagctctgtttgtacatgatgctttgtgtaagcacaagcctgaagcaaaccatctcatttgcatatagaaatttacatgttttcagttttcccagtgtctactgagtgttaagcatttgcttgtagaaacttacatgttttcagttttcccagtgtctactgaatattaattcaggtgaaagaaaaaaaaataagaagagagatttttttttgtttgatgat
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CDS seq | atggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgactcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgCccCGGCCCCGCGCCGGCGGCGGCCGGGGACGTGTGGTGCACGTGCGCTCCCGGGATACCGTTCGCCGCCGAGGCGTCGTCGGTGGACTGCGTCGTGGTGGCGCGCCACCACCACGCCCACCACACGGCGGCGGCGATGGGCTCCGGCCGCCGCGGGGAGGCGGAGCGGCGCCACAGAGAGAGGCCGTCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGATCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaCcccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatga
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Protein seq | MARRDGGASAAEQQRRVALRVLLSRAEASSPPPATVEEEAQRGRSGGGNKGLASAALRGLGCTSTAALRAHAPASAVEVATRSGGTGGGGGGRCRRGGARGAAAEEEEEAWRRPGPAPAAAGDVWCTCAPGIPFAAEASSVDCVVVARHHHAHHTAAAMGSGRRGEAERRHRERPSAPRARRVTMREHISSSLMDSPPFPDMPLLNADLLPPPPSGRHRHGYRHPHVGAAEEEIMMLRTRLLWGRFGMHDQHQDWRLDVDNMTYEELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQEEFEANEETGRLICGHSYHVQCIKQWLSRKNTCPVCKTVVSKT |
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Function | Probable E3 ubiquitin-protein ligase HIP1 [UniProtKB/Swiss-Prot:Q7XTV7] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLima_05g0025570 | OsLima_05g0025570.01 | Chr05 | 28373434 | 28376476 | + | NAM | ||
CDS seq | atggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgactcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgCccCGGCCCCGCGCCGGCGGCGGCCGGGGACGTGTGGTGCACGTGCGCTCCCGGGATACCGTTCGCCGCCGAGGCGTCGTCGGTGGACTGCGTCGTGGTGGCGCGCCACCACCACGCCCACCACACGGCGGCGGCGATGGGCTCCGGCCGCCGCGGGGAGGCGGAGCGGCGCCACAGAGAGAGGCCGTCCGCTCCTCGAGCTCGAAGGGTGACCATGCGTGAGCACATATCCTCGTCGCTCATGGACTCGCCGCCGTTCCCCGACATGCCGCTCCTCAACGCCGATCTGCTACCACCACCACCCTCCGGCCGCCACCGCCATGGATACCGCCACCCCCACGTCGGCGCCGCCGAGGAAGAGatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaCcccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatga
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Protein seq | MARRDGGASAAEQQRRVALRVLLSRAEASSPPPATVEEEAQRGRSGGGNKGLASAALRGLGCTSTAALRAHAPASAVEVATRSGGTGGGGGGRCRRGGARGAAAEEEEEAWRRPGPAPAAAGDVWCTCAPGIPFAAEASSVDCVVVARHHHAHHTAAAMGSGRRGEAERRHRERPSAPRARRVTMREHISSSLMDSPPFPDMPLLNADLLPPPPSGRHRHGYRHPHVGAAEEEIMMLRTRLLWGRFGMHDQHQDWRLDVDNMTYEELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQEEFEANEETGRLICGHSYHVQCIKQWLSRKNTCPVCKTVVSKT
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.549431 | 0.172684 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0550000 | RBH | 2.122786 | 0.651485 | 0.696817 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g47670 | RBH | 1.628421 | 0.488869 | 0.155532 |
Nipponbare | IRGSP 1.0 | RAP-db | Os05g0550000 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025940 | RBH | 1.807782 | 9.953609 | 4.369500 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025760 | RBH | 0.716318 | 2.222487 | 0.444966 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025700 | RBH | 1.983072 | 7.446823 | 4.670587 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025770 | RBH | 0.347616 | 0.080497 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025730 | RBH | 2.175543 | 0.000000 | 2.281666 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0424200 | RBH | 13.33413 | 44.4687215 | 5.6876595 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025370 | RBH | 0.370205 | 0.670379 | 0.516117 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0436000 | RBH | 4.860708 | 13.8825225 | 4.7761375 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028790 | RBH | 0.112023 | 0.097760 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025470 | RBH | 1.199972 | 11.394735 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025670 | RBH | 4.035936 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025690 | RBH | 0.845721 | 0.000000 | 1.304493 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025710 | RBH | 0.324713 | 6.597593 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025150 | RBH | 0.459779 | 1.240484 | 1.490169 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025690 | RBH | 1.721470 | 8.180983 | 4.406571 |