Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0025690 | OGI:05073920 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:28188656-28191747 | ||||||||
| Gene Symbol | OsRFPH2-20 | ||||||||||
| DNA seq | acctaaccgccaagaagtgcaagcacacgagcgcgcgagtggttgagctcaatggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgagtagctcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgcccggccccgcgccggcggcggccggggacgtgtggtgcacgtgcgctcccgggataccgttcgccgccgaggcgtcgtcggtggactgcgtcgtggtggcgcgccaccaccacgcccaccacacggcggcggcgatgggctccggccgccgcggggaggcggagcggcgccacagagaggtaatcgaatctctcctcgttttttttttttgttcatgctaaaaatttgaccacgatttcacttctccgtggtcaaattcagtcgttgttcatcactcgtacggatgtttttcttcataattctgactgaattcgtatgctatcctgtcgaactgaccgaaaattcctcggatacaacagaggccgtccgctcctcgagctcgaagggtgaccatgcgtgagcacatatcctcgtcgctcatggactcgccgccgttccccgacatgccgctcctcaacgccgatctgctaccaccaccaccctccggccgccaccgccatggataccgccacccccacgtcggcgccgccgaggaagaggtacacacaaatccaatgcatgcaactatccaactaatcacaatatttctgcctttctctcacactttcagtcatcagttgcgtctgcaccacacaagtacacacaacttttcaacgcgattatccgtcttgttggtagatgtgtttgtttagatgtcacatgatggcatccgctttgcatgttgttaactaaagctctaaaaaaaacgagatttggagagagagacgtccctccgaacatttgtaagaagaaattgtgagcgtattacggattgaacacgggaccttaaggttgaaatcacacaacccgtgccactgcactgtcaagtacatctcattgttaactaaactctagatggatgcttaattgcaagttcaataataaagaagagggtcgatgcagctttgaaaaatggtagtacaacatgttgatttacatactccggtttggtagtcacggatatgtaggacaggcagcagattggaaggaaggaagagcacatgagagcaaaggggatatggtggtcatgaatagatagatacgttaggtgaagaagagagacctcctttgagtgtagttgcagagtcctctttcttttctgtgtacacgcataaggcataaatgctgaatcattgtgctgaagctgaactcactgaacaaccacgttgctgctggttcttttggtcagcttcagttggctgccatgttgctggaatgagtggtggttgattgtttagtgtttactgttctgttgtaggattggagcatgagcagtgaggagtttgaatgcccaattggtgattagataatcctgtcactttcttcaagtagtagtatgaactgtgagctgacatgcttgtgagggaaacatgcttgcagttaagacagattgaaatgtttagttctgagaaatgagctgtcatatgccacttggttgcttactactccctccgtttcacaatgtaagtcattctagcatttcccacattcatattgatgttagtgaatctagacatatatatctatctagattcattaacaacaatatgtgtgagaaatgctagaatgacttacattgtgaaacggaggaagtagaagcgattgtgaacacaatactcaatccgctttagtaagtgatggctccaagttcacaattctcaattagttatgtccaattaagatccaccagtacctttttagcgtatttttgcagaatgtgtgtatctccaaatataacaaacacctcttttcatcttcagttttattaaatcatctttgcaaattgcagatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggtaccctcccatgcccaatatgtgcaacccAaaaaaaaaaaaactttttagtacattaccatcacaaattctccttcatccacccattgttcaatttgataggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaccccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggtaagcgcaccttccaattcgctattaaccatatagtatcagcatctgttgattagcctaagtccatgtcaacatttcatatctcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatgaaatccaatcagtccctaagcacacttgaactgaaaattgtgaaaaggacttactctttcacagtgtttgtttgtgattgtacagctctgtttgtacatgatgctttgtgtaagcacaagcctgaagcaaaccatctcatttgcatatagaaatttacatgttttcagttttcccagtgtctactgagtgttaagcatttgcttgtagaaacttacatgttttcagttttcccagtgtctactgaatattaattcaggtgaaagAaaaaaaaataagaagagagaTttttttttgtttgatgat
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| CDS seq | atggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgagtagctcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgcccggccccgcgccggcggcggccggggacgtgtggtgcacgtgcgctcccgggataccgttcgccgccgaggcgtcgtcggtggactgcgtcgtggtggcgcgccaccaccacgcccaccacacggcggcggcgatgggctccggccgccgcggggaggcggagcggcgccacagagagaggccgtccgctcctcgagctcgaagggtgaccatgcgtgagcacatatcctcgtcgctcatggactcgccgccgttccccgacatgccgctcctcaacgccgatctgctaccaccaccaccctccggccgccaccgccatggataccgccacccccacgtcggcgccgccgaggaagagatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaccccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatga
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| Protein seq | MARRDGGASAAEQQRRVALRVLLSRAEASSPPPATVEEEAQRGRSGGGNKGLASAALRGLGCTSTAALRAHAPASAVEVASSSERWHGRRRRRKVQERRSARGGGGGGGGGVAPPGPAPAAAGDVWCTCAPGIPFAAEASSVDCVVVARHHHAHHTAAAMGSGRRGEAERRHRERPSAPRARRVTMREHISSSLMDSPPFPDMPLLNADLLPPPPSGRHRHGYRHPHVGAAEEEIMMLRTRLLWGRFGMHDQHQDWRLDVDNMTYEELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQEEFEANEETGRLICGHSYHVQCIKQWLSRKNTCPVCKTVVSKT |
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| Function | Probable E3 ubiquitin-protein ligase HIP1 [UniProtKB/Swiss-Prot:Q7XTV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0025690 | OsLiXu_05g0025690.01 | Chr05 | 28188656 | 28191747 | + | NAM | ||
| CDS seq | atggctcgccgcgacggcggcgcgtcggcggcggagcagcagcggagagtagcgctgcgtgtgctgctgtcccgtgcggaggcttcctcgccgccgccggcgacggtggaggaggaggcgcagcgggggaggagcggtggtggtaacaaggggctcgcgtcggcggcgctgcgcgggctcgggtgcacgtcgacggcggcgctgcgtgcccacgcgccggcttcggcggtggaggtggcgagtagctcggagcggtggcacgggaggcggcggcggaggaaggtgcaggagaggcggagcgcgaggggcggcggcggaggaggaggaggaggcgtggcgccgcccggccccgcgccggcggcggccggggacgtgtggtgcacgtgcgctcccgggataccgttcgccgccgaggcgtcgtcggtggactgcgtcgtggtggcgcgccaccaccacgcccaccacacggcggcggcgatgggctccggccgccgcggggaggcggagcggcgccacagagagaggccgtccgctcctcgagctcgaagggtgaccatgcgtgagcacatatcctcgtcgctcatggactcgccgccgttccccgacatgccgctcctcaacgccgatctgctaccaccaccaccctccggccgccaccgccatggataccgccacccccacgtcggcgccgccgaggaagagatcatgatgttaagaacacggctattatggggaagattcggtatgcatgatcagcaccaggattggcgactcgacgttgacaacatgacatatgaggagctgctggatcttgaagacagaattgggtatgtaagcacagggttgcatgacgatgaaatcgctcgcagccttaggatggtcaagtattcagcattcaaccccaagcattttgcaacagaagtagaaaggaattgcagtatttgtcaggaagaatttgaagcaaatgaggaaacagggaggctgatctgtggccacagctatcatgtgcaatgcataaagcagtggctttctaggaagaacacctgccctgtctgcaaaactgttgtatcgaagacatga
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| Protein seq | MARRDGGASAAEQQRRVALRVLLSRAEASSPPPATVEEEAQRGRSGGGNKGLASAALRGLGCTSTAALRAHAPASAVEVASSSERWHGRRRRRKVQERRSARGGGGGGGGGVAPPGPAPAAAGDVWCTCAPGIPFAAEASSVDCVVVARHHHAHHTAAAMGSGRRGEAERRHRERPSAPRARRVTMREHISSSLMDSPPFPDMPLLNADLLPPPPSGRHRHGYRHPHVGAAEEEIMMLRTRLLWGRFGMHDQHQDWRLDVDNMTYEELLDLEDRIGYVSTGLHDDEIARSLRMVKYSAFNPKHFATEVERNCSICQEEFEANEETGRLICGHSYHVQCIKQWLSRKNTCPVCKTVVSKT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.845721 | 0.000000 | 1.304493 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0550000 | RBH | 2.122786 | 0.651485 | 0.696817 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g47670 | RBH | 1.628421 | 0.488869 | 0.155532 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0550000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025940 | RBH | 1.807782 | 9.953609 | 4.369500 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025760 | RBH | 0.716318 | 2.222487 | 0.444966 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025700 | RBH | 1.983072 | 7.446823 | 4.670587 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025770 | RBH | 0.347616 | 0.080497 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025730 | RBH | 2.175543 | 0.000000 | 2.281666 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0424200 | RBH | 13.33413 | 44.4687215 | 5.6876595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025370 | RBH | 0.370205 | 0.670379 | 0.516117 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0436000 | RBH | 4.860708 | 13.8825225 | 4.7761375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025570 | RBH | 0.549431 | 0.172684 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025470 | RBH | 1.199972 | 11.394735 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025670 | RBH | 4.035936 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029150 | RBH | 1.762888 | 0.677241 | 0.793330 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025710 | RBH | 0.324713 | 6.597593 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025150 | RBH | 0.459779 | 1.240484 | 1.490169 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025690 | RBH | 1.721470 | 8.180983 | 4.406571 |
