Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0023650 | OGI:05069860 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:27036010-27036749 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcgggcatttctgacccagtgccgccgccttgtccgtcgacgtgtctcaagaactacgctgaccggagtggcggagttgctgcaagttcatcgagagggaagtcttggagaagtcgaggtatatgaagaacgattccttcacctccgctgcgacgtcgtcgtcgtcgtcgtcaacgatgacacggcggcgccccaaagccttgtcgtcgctaataagcctccccgattgcccgacctgcaccatcacctcggcgaactcctaaatcctaattcgtgcagggaaggacgcggatgtggcgttcgaggtcggcggcggcGgcggggtgagattcgccgcgcaccggtgcgtgctcgcggcgcggtccaaggttttcaaggcggagctcttcggcgcgatgaaagagggcgacgccgcatgcgtcgtccgcatcgacgacatggagccgcaggtgttcagggcgctgctcttcttcgtgtacaccgactcgttgccggagatgagaaaggaggaggaagaagccatatgccagcgtctgctcgtcgcagccgaagtgtacggcatggagaggctcaagctgatatgcgagagcaagttgtgcaagtacattgacgtgggcacagtggcgtccatcatggcgttggttgaccagtaccattgccatggcccatggcctcatgaaggcttgcttagattttgtcagctttccagacaatctaatggtggtgttagccactga
More
|
||||||||||
| CDS seq | atgtcgggcatttctgacccagtgccgccgccttgtccgtcgacgtgtctcaagaactacgctgaccggagtggcggagttgctgcaagttcatcgagagggaagtcttggagaagtcgagggaaggacgcggatgtggcgttcgaggtcggcggcggcGgcggggtgagattcgccgcgcaccggtgcgtgctcgcggcgcggtccaaggttttcaaggcggagctcttcggcgcgatgaaagagggcgacgccgcatgcgtcgtccgcatcgacgacatggagccgcaggtgttcagggcgctgctcttcttcgtgtacaccgactcgttgccggagatgagaaaggaggaggaagaagccatatgccagcgtctgctcgtcgcagccgaagtgtacggcatggagaggctcaagctgatatgcgagagcaagttgtgcaagtacattgacgtgggcacagtggcgtccatcatggcgttggttgaccagtaccattgccatggcccatggcctcatgaaggcttgcttagattttgtcagctttccagacaatctaatggtggtgttagccactga
More
|
||||||||||
| Protein seq | MSGISDPVPPPCPSTCLKNYADRSGGVAASSSRGKSWRSRGKDADVAFEVGGGGGVRFAAHRCVLAARSKVFKAELFGAMKEGDAACVVRIDDMEPQVFRALLFFVYTDSLPEMRKEEEEAICQRLLVAAEVYGMERLKLICESKLCKYIDVGTVASIMALVDQYHCHGPWPHEGLLRFCQLSRQSNGGVSH |
||||||||||
| Function | BTB/POZ and MATH domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9M8J9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0023650 | OsLima_05g0023650.01 | Chr05 | 27036010 | 27036749 | + | NAM | ||
| CDS seq | atgtcgggcatttctgacccagtgccgccgccttgtccgtcgacgtgtctcaagaactacgctgaccggagtggcggagttgctgcaagttcatcgagagggaagtcttggagaagtcgagggaaggacgcggatgtggcgttcgaggtcggcggcggcGgcggggtgagattcgccgcgcaccggtgcgtgctcgcggcgcggtccaaggttttcaaggcggagctcttcggcgcgatgaaagagggcgacgccgcatgcgtcgtccgcatcgacgacatggagccgcaggtgttcagggcgctgctcttcttcgtgtacaccgactcgttgccggagatgagaaaggaggaggaagaagccatatgccagcgtctgctcgtcgcagccgaagtgtacggcatggagaggctcaagctgatatgcgagagcaagttgtgcaagtacattgacgtgggcacagtggcgtccatcatggcgttggttgaccagtaccattgccatggcccatggcctcatgaaggcttgcttagattttgtcagctttccagacaatctaatggtggtgttagccactga
More
|
|||||||
| Protein seq | MSGISDPVPPPCPSTCLKNYADRSGGVAASSSRGKSWRSRGKDADVAFEVGGGGGVRFAAHRCVLAARSKVFKAELFGAMKEGDAACVVRIDDMEPQVFRALLFFVYTDSLPEMRKEEEEAICQRLLVAAEVYGMERLKLICESKLCKYIDVGTVASIMALVDQYHCHGPWPHEGLLRFCQLSRQSNGGVSH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0398100 | SBH | 1.726040 | 0.924143 | 6.128984 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44530 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0398100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023960 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023820 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023890 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0400600 | RBH | 0 | 0 | 0.0399255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023490 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0412300 | RBH | 0.0289955 | 0 | 0.0364355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021660 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023210 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023590 | RBH | 0.0 | 0.0 | 0.0 |
