Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os05g0398100 | OGI:05052400 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr05:19368978-19371718 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCATGATTTGGGCTCTGTTTTAGTCGAATAAAAGGATGTTACAATGTTGTTGGTGCCATCGAATGCCAATGTCCAACGCCAGAAAAAGAAACTTTTAGCTGTACAAGATCTCCCGAAGCGACTGTCAGATGTGTGGGTGGTGTCAAGGATTGTGGAAGGGGCACGGACTCATGGCTGCGCATTCCTGTGGCTTGGCCTTAGCGCCTTAGCGAAGAAGTTGCGGAGCTCTGGGATGACACGCTGGATCAGCTGGCTTGACCTGCATTGCAAAATGGCATGGCAAATGATTTCTGTTACCTAAAATGAGTTACATAACACAAACATTTGGACCTAGGAACAGGACACTAGGTGAGGAAGTGTACCCAGATTTGACGCAAATCTTTTCAAACTGCTCCAAGATAAATAGGACACATGTATGTCTGAGTGACATTGCATGAAAAGCTTCAGATAGGTCATACATGTCAGAAACGTTGTCTACATTCACATCCTGCAAGGCAGATATATTAAATAAGACCAAGCCAGCATTTTGAGCATAGCATACAGGTAACAATCCTAATTACCTGCGCAATTGTATATTCACACAGACGTTTGAGGCCTTCTAATAGATACTGATCAGCAGCTCTAAGAAGATCCTGAGAGATATCGCTAGTTACTTCCACTGAACCTGTATAGATAAATCTGCATATACCAAATAGGATATTCAGACTCTAGTTTAGCAGGCATTTGCCCACAAACCAGAAAAGAATAATAACAATTACAGATATGTGCACAGAAGCAAAGCGTCCATGGCCAAGGAGGAAGAGAACTCAAAGCTGACTTACCTCATCATGAGTTCAAACACATTCCATCTGATATTTGGAATTTCTATGTCTCTCGCGTCCTTTTCCTGGTTAAGAAAAATAGTATTCGAGTCAAGACACATTGAGGTTCTTTAAAAAATGAAAAAATATACCTCAACAAGAATTGTTCCACTAAGAAACAAATCCACATGTACCAAACGAAAAAAGAAATGCTACACAAGACTCACCCTATATCCGCCATCAAACATTGCACGAAATGCATCCGAAGAAGCAAGTAATGCAATTCTATGTGCATAAAAGCGCTTTCCTGGAGACAACAGGAATATGATTTACATGGATTCTATGGAAAAGATCGAAGTATCTAAAGTGACTTTCTGGTGACAACTGGGTCCACAGATAAAATACCAACCTTCCACCAAGAAGGTAACATCTGAAAGTGTCGAACTGTTCACATATTGCTCACCAAGATAAACCTACAATGAAGAAAATACATTAAGTATCAGGGATTGCCAGCACTGTTGATGGACCAATTGCTCCAAATGATATATTCGAATCCAGCATTGCACAAACTAGGTTTTACTGAGATAACACCTTATTAATAGGACTGACTGCTAATTAGGAACAGACTATCCGGCATATAAATTCAGATGGCAGTATATCTGAATTCTATGTGCGCTATGCTCTGAAGGCTGAGGATAAAAATAATCCATAGAAATGCACAGATGCATACATACTGCCTGAGTGAATTCAAATCTTGCAACAACTTGGTCATGTCTGACAAAGTTCCTAAAAGTTTTGTCCTACAAAAGCCTAACAAAGGAAATAAATGCTTGGTTTGCTCAGAAAGCAGATGGCCTGAAGGTCACACATCTTAAAAGACATGAATGGGAAATCATGCATAGTGTTGACTAGGATGAAACGTATATAAATAAGTGTGAAAGTGTGACGAGGCTGTTGTGCAATTTGCGAGATGAAGCACCATTTATATCAGTATTTATGACAGATGTTTCTATTATTTAGTTTACATGAGCCATGGGGAATATCAGTCAATCATACTTCTAGAATTTCATGGCAACAGTTGTACCACCAATATCATGATAAAAACTTTGAAATTTCGAGGTAAGGCAACAAGAACATGATTAAAGGCAATGTTACCGCTACTGACGAGTCAAATAACACATAGGTCTTAAAAAACTATTATCATAGACTGCTCCAAAATTAACTTAAGATAGTACAAGTTTGAAAAACTGTTGGGTGGTTCAACTGAAATGTTACAGTATGTTATAAGTTATGTAAACTAATGTTTCTTTTTTCAACTTAAAACTAGCATTAAACTTAGCTATTAATATTCACATCCTAGTAACCCTAAGCTTCTTAATGAAATATTGGCGATGAATGTACAGGATTGTTCCTTTAGTTAATATTTTGCAACAATTTTCCGCAGCTATCACATAATTCGCACAACCAAGAAGCCAAGAATCTGTGTTGCATATTTATTTACAGCTATTATACATCCACCTCCAATTTCCTGTCAAAATACTAATCAAACAAGATTGTCAGCCAACAATTAGCTAGTTTTGTTGCATTACACAAATTTCCCCTAAACATGTACTGTTTTGTTTATTTCTAACAAAAAAACCCTTTTAATGCATTGATTATACAAAATAAAATCAATGCATGGGCATTACCACATCGTAGTTCAGTCCATATCACATTGAAAACCTTTTACATAGCACACCACAATCAACTCATAAAGCCTTTGGCATAAACAAGGAAAGGTTGGGTTGAATTAAGAACCAATTCTCTACCTGTGGTGTTGGAGATGGAGGTGCAGCATCCATGGGAGAAAGTGCTGCAGCTTTGTTGGCCAATTTGTATAGTGCTACTGAACCATCTAGCTGATGCTTCAGGCTCACCGAAACCAGAAGATCAAGAAGCAAC
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| CDS seq | TTGCTTCTTGATCTTCTGGTTTCGGTGAGCCTGAAGCATCAGCTAGATGGTTCAGTAGCACTATACAAATTGGCCAACAAAGCTGCAGCACTTTCTCCCATGGATGCTGCACCTCCATCTCCAACACCACAGGTTTATCTTGGTGAGCAATATGTGAACAGTTCGACACTTTCAGATGTTACCTTCTTGGTGGAAGGAAAGCGCTTTTATGCACATAGAATTGCATTACTTGCTTCTTCGGATGCATTTCGTGCAATGTTTGATGGCGGATATAGGGAAAAGGACGCGAGAGACATAGAAATTCCAAATATCAGATGGAATGTGTTTGAACTCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGATATCTCTCAGGATCTTCTTAGAGCTGCTGATCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTGACATGTATGACCTATCTGAAGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTTGCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCTTCGCTAAGGCGCTAAGGCCAAGCCACAGGAATGCGCAGCCATGA
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| Protein seq | LLLDLLVSVSLKHQLDGSVALYKLANKAAALSPMDAAPPSPTPQVYLGEQYVNSSTLSDVTFLVEGKRFYAHRIALLASSDAFRAMFDGGYREKDARDIEIPNIRWNVFELMMRFIYTGSVEVTSDISQDLLRAADQYLLEGLKRLCEYTIAQDVNVDNVSDMYDLSEAFHAMSLRHTCVLFILEQFEKICVKSGSSQLIQRVIPELRNFFAKALRPSHRNAQP |
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| Function | ARM REPEAT PROTEIN INTERACTING WITH ABF2 [UniProtKB/Swiss-Prot:B9DHT4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os05g0398100 | Os05t0398100-01 | Chr05 | 19368978 | 19371718 | - | irgsp1_rep | ||
| CDS seq | TTGCTTCTTGATCTTCTGGTTTCGGTGAGCCTGAAGCATCAGCTAGATGGTTCAGTAGCACTATACAAATTGGCCAACAAAGCTGCAGCACTTTCTCCCATGGATGCTGCACCTCCATCTCCAACACCACAGGTTTATCTTGGTGAGCAATATGTGAACAGTTCGACACTTTCAGATGTTACCTTCTTGGTGGAAGGAAAGCGCTTTTATGCACATAGAATTGCATTACTTGCTTCTTCGGATGCATTTCGTGCAATGTTTGATGGCGGATATAGGGAAAAGGACGCGAGAGACATAGAAATTCCAAATATCAGATGGAATGTGTTTGAACTCATGATGAGATTTATCTATACAGGTTCAGTGGAAGTAACTAGCGATATCTCTCAGGATCTTCTTAGAGCTGCTGATCAGTATCTATTAGAAGGCCTCAAACGTCTGTGTGAATATACAATTGCGCAGGATGTGAATGTAGACAACGTTTCTGACATGTATGACCTATCTGAAGCTTTTCATGCAATGTCACTCAGACATACATGTGTCCTATTTATCTTGGAGCAGTTTGAAAAGATTTGCGTCAAATCTGGGTCAAGCCAGCTGATCCAGCGTGTCATCCCAGAGCTCCGCAACTTCTTCGCTAAGGCGCTAAGGCCAAGCCACAGGAATGCGCAGCCATGA
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| Protein seq | LLLDLLVSVSLKHQLDGSVALYKLANKAAALSPMDAAPPSPTPQVYLGEQYVNSSTLSDVTFLVEGKRFYAHRIALLASSDAFRAMFDGGYREKDARDIEIPNIRWNVFELMMRFIYTGSVEVTSDISQDLLRAADQYLLEGLKRLCEYTIAQDVNVDNVSDMYDLSEAFHAMSLRHTCVLFILEQFEKICVKSGSSQLIQRVIPELRNFFAKALRPSHRNAQP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0398100 | RBH | 1.726040 | 0.924143 | 6.128984 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g33050 | RBH | 1.255637 | 0.722522 | 1.536506 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0016300 | RBH | 0.610223 | 16.276712 | 8.046185 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0016300 | RBH | 0.062382 | 2.402254 | 3.717386 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0016140 | RBH | 1.447298 | 10.060757 | 12.027080 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0016160 | RBH | 0.041775 | 0.514303 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0016320 | RBH | 6.109656 | 17.241148 | 16.174622 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0297400 | RBH | 7.3745855 | 14.4993515 | 21.5705595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0015860 | RBH | 0.288491 | 1.411790 | 1.591345 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0307500 | RBH | 8.4967455 | 15.8817955 | 22.945668 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0016150 | RBH | 0.203384 | 0.257257 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0016120 | RBH | 0.320063 | 11.364666 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0016170 | RBH | 3.481817 | 8.761248 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0016200 | RBH | 0.786102 | 0.596155 | 1.438061 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0016260 | RBH | 0.463822 | 6.687565 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G015760 | RBH | 0.680759 | 6.256208 | 2.463962 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016060 | RBH | 1.178895 | 24.214752 | 15.599062 |
