Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0021770 | OGI:05065520 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:25346822-25350187 | ||||||||
| Gene Symbol | YR48 | ||||||||||
| DNA seq | atgccagtcggagaagctgtgctgtccgcgttcatgcaggcgcttttcgagaaagcggtggccgctgcttccagcgagctgaaattccctcaaaacatagctgtagagctgcagaatctatcaagcagtctgtcgacaattcaggctcacgttgaagatgcagaggagcggcagctgaaagatcaggcggcaagaagctggctttccaggctcaaggacgtcgcgtatgagatggatgacctgcttgatgagcatgctgctggagtcctccgatccaaacttgcagacccatccaactatcaccatctgaaggttagaatctgcttctgctgcatttggttgaaaaatgggttatttaacagagatttagtaaaacaaataatgcggattgaggggaagatcgataggcttattaaagacagacatattgtcgatccaatcatgaggtttaacagggaagagataagagagaggcccaagaccagttcgttaattgacgactcgagtgtgtatggtagagaagaagataaagacgtcattgtaaacatgttactcaccacgcataactcaaaccatgtcaacctttctattcttcccatagtgggtatgggaggagtagggaagacaactttaacacagctcgtctacaatgatgtgagagtaaagaagcatttccagttaagaatgtggctgtgtgtttctgaaaactttgatgaggcaaaacttaccaaggaaacgatagaatcagttgcgagcggattatcatccgccacaacaaacatgaacttgcttcaagaagacctctcaaacaagctgaaaggcaaaaggtttcttctagtattggatgatgtatggaatgaggatcctgatagatgggatagataccgacgtgctctagttgctggtgcaaaaggaagcaaaattatggtgactactcgaaatgaaaatgttgggaaattaatgggcgggttgactccttactatctaaaacagttatcatacaatgatagctggcatttAttcagaagctatgcatttgtagatggtgactccagtgcacacccaaatttggaaatgatcggcaaggaaattgtccataagttgaaaggcctaccattagctgcaaaagctctaggtagcttattatgtgctaaggacaacgaggatgactggaaaaatatcctagaaagtgaaatatgggaattgccatcagacaagaataatatcttaccagctctgagactgagttacaATCatcttccacccatattgaagcgatgctttgcattctgctcggtctttcacaaagactatgtgtttgagaaagacatattggtccagatctggatggcagttgggtacatccagcctcaaggacggagaaggatggaagagattgggaaTaactattttgatgaattactgagcagatccttcttccaaaaacacaaggatggatacgtgatgcatgatgccatgcatgatctagcgcagtctgtctccattgatgaatgcatgagactggataatcttccaaacaatagcaccacagaaagaaatgccaggcacctatcattctcttgtgacaataaaagtcaaactacatttgaagcttttcgtggatttaatagagcacgaagccttctactgctgaatggatataaatcaaagacaagctctatccccagtgatctgttcctcaatttaaggtacctccatgtccttgatttgaaccgacaagaaattacagaattgccagaatctgttggaaaattaaagatgctccgatacttgaacctatcaggcactggtgtaagaaagctgccttcatcaattggtaagctctattgcttgcaaacacttaagttacgaaactgcctcgcattagatcacctcccaaaaagcatgactaatcttgtaaatctccgatccctcgaagcaagaactgaactgatcactggcatagccagaatagggaaattgacttgccttcaaaagttggaggaatttgttgtccgtaaggacaaaggatacaaggttagtgaattgaaggctatgaataagatcagaggacaaatctgcattaaaaatctagagagcgtatctagtgcggaagaagcagatgaagcattgctaagtgagaaggcacacatcagcattctagaccttatatggtccaatagcagggattttacttcagaagaagcaaaccaggacatagaaacactcacatcccttgaaccacatgatgaactcaaggagctgacagtcaaggcatttgcaggcttcgaatttccatattggataaatgggctctcacatttgcaaagtatccatctttctgactgtacaaattgttcaattctgccagcacttggacagctgcctctactcaaggttataatcattgggggttttcctaccattattaaaattggagatgagttttcaggtactagtgaagttaaggggtttccgtcactgaaagaacttgtatttgaagacatgcctaatctcgaaaggtggacttccacacaagatggtgagtttcttccattccttagagaacttcaagtgcttgactgcccaaaagtaacggaattgccactcctcccatcaacACTagtggaactgaaaatttctgaggcaggcttttccgtacttcctgaagttcatgctccaagttctcaatttgtaccatcattgacacgcctacagattcacaaatgccccaatctcacatccttacagcaaggattgcttagtcagcaattatcagCcctccagcaactaaccatcactaactgtccagaactaattcaccccccaactgaaggattacgaactttaactgctcttcagagtcttcacatttatgattgtccaaggctggcaacagcagaacatcgtggcttactacctcacatgattgaagatctacgcatcacctcatgctccaacataatcaatcctcttcttgatgaacttaatgagctctttgctctgaagaatcttgtcattgcggattgcgttagccttaatacttttccagaaaagttaccggctactctccaaaaattggacatcttcaattgcagtaatctggcctccttgcctgctggtttacaagaagcctcttgtctaaaaactatgactatcttaaattgtgttagcataaaatgcctgccagcacatggacttccgctgtccttagaagaattatacatcaaagagtgcccatttctggcagagaggtgtcaagaaaacagtggagaagattggcctaaaatatctcatatagccatcatagagattgacgatgatagtgccatgccagataggagcataaggagaagattatgctga
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| CDS seq | atgccagtcggagaagctgtgctgtccgcgttcatgcaggcgcttttcgagaaagcggtggccgctgcttccagcgagctgaaattccctcaaaacatagctgtagagctgcagaatctatcaagcagtctgtcgacaattcaggctcacgttgaagatgcagaggagcggcagctgaaagatcaggcggcaagaagctggctttccaggctcaaggacgtcgcgtatgagatggatgacctgcttgatgagcatgctgctggagtcctccgatccaaacttgcagacccatccaactatcaccatctgaaggttagaatctgcttctgctgcatttggttgaaaaatgggttatttaacagagatttagtaaaacaaataatgcggattgaggggaagatcgataggcttattaaagacagacatattgtcgatccaatcatgaggtttaacagggaagagataagagagaggcccaagaccagttcgttaattgacgactcgagtgtgtatggtagagaagaagataaagacgtcattgtaaacatgttactcaccacgcataactcaaaccatgtcaacctttctattcttcccatagtgggtatgggaggagtagggaagacaactttaacacagctcgtctacaatgatgtgagagtaaagaagcatttccagttaagaatgtggctgtgtgtttctgaaaactttgatgaggcaaaacttaccaaggaaacgatagaatcagttgcgagcggattatcatccgccacaacaaacatgaacttgcttcaagaagacctctcaaacaagctgaaaggcaaaaggtttcttctagtattggatgatgtatggaatgaggatcctgatagatgggatagataccgacgtgctctagttgctggtgcaaaaggaagcaaaattatggtgactactcgaaatgaaaatgttgggaaattaatgggcgggttgactccttactatctaaaacagttatcatacaatgatagctggcatttAttcagaagctatgcatttgtagatggtgactccagtgcacacccaaatttggaaatgatcggcaaggaaattgtccataagttgaaaggcctaccattagctgcaaaagctctaggtagcttattatgtgctaaggacaacgaggatgactggaaaaatatcctagaaagtgaaatatgggaattgccatcagacaagaataatatcttaccagctctgagactgagttacaATCatcttccacccatattgaagcgatgctttgcattctgctcggtctttcacaaagactatgtgtttgagaaagacatattggtccagatctggatggcagttgggtacatccagcctcaaggacggagaaggatggaagagattgggaaTaactattttgatgaattactgagcagatccttcttccaaaaacacaaggatggatacgtgatgcatgatgccatgcatgatctagcgcagtctgtctccattgatgaatgcatgagactggataatcttccaaacaatagcaccacagaaagaaatgccaggcacctatcattctcttgtgacaataaaagtcaaactacatttgaagcttttcgtggatttaatagagcacgaagccttctactgctgaatggatataaatcaaagacaagctctatccccagtgatctgttcctcaatttaaggtacctccatgtccttgatttgaaccgacaagaaattacagaattgccagaatctgttggaaaattaaagatgctccgatacttgaacctatcaggcactggtgtaagaaagctgccttcatcaattggtaagctctattgcttgcaaacacttaagttacgaaactgcctcgcattagatcacctcccaaaaagcatgactaatcttgtaaatctccgatccctcgaagcaagaactgaactgatcactggcatagccagaatagggaaattgacttgccttcaaaagttggaggaatttgttgtccgtaaggacaaaggatacaaggttagtgaattgaaggctatgaataagatcagaggacaaatctgcattaaaaatctagagagcgtatctagtgcggaagaagcagatgaagcattgctaagtgagaaggcacacatcagcattctagaccttatatggtccaatagcagggattttacttcagaagaagcaaaccaggacatagaaacactcacatcccttgaaccacatgatgaactcaaggagctgacagtcaaggcatttgcaggcttcgaatttccatattggataaatgggctctcacatttgcaaagtatccatctttctgactgtacaaattgttcaattctgccagcacttggacagctgcctctactcaaggttataatcattgggggttttcctaccattattaaaattggagatgagttttcaggtactagtgaagttaaggggtttccgtcactgaaagaacttgtatttgaagacatgcctaatctcgaaaggtggacttccacacaagatggtgagtttcttccattccttagagaacttcaagtgcttgactgcccaaaagtaacggaattgccactcctcccatcaacACTagtggaactgaaaatttctgaggcaggcttttccgtacttcctgaagttcatgctccaagttctcaatttgtaccatcattgacacgcctacagattcacaaatgccccaatctcacatccttacagcaaggattgcttagtcagcaattatcagCcctccagcaactaaccatcactaactgtccagaactaattcaccccccaactgaaggattacgaactttaactgctcttcagagtcttcacatttatgattgtccaaggctggcaacagcagaacatcgtggcttactacctcacatgattgaagatctacgcatcacctcatgctccaacataatcaatcctcttcttgatgaacttaatgagctctttgctctgaagaatcttgtcattgcggattgcgttagccttaatacttttccagaaaagttaccggctactctccaaaaattggacatcttcaattgcagtaatctggcctccttgcctgctggtttacaagaagcctcttgtctaaaaactatgactatcttaaattgtgttagcataaaatgcctgccagcacatggacttccgctgtccttagaagaattatacatcaaagagtgcccatttctggcagagaggtgtcaagaaaacagtggagaagattggcctaaaatatctcatatagccatcatagagattgacgatgatagtgccatgccagataggagcataaggagaagattatgctga
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| Protein seq | MPVGEAVLSAFMQALFEKAVAAASSELKFPQNIAVELQNLSSSLSTIQAHVEDAEERQLKDQAARSWLSRLKDVAYEMDDLLDEHAAGVLRSKLADPSNYHHLKVRICFCCIWLKNGLFNRDLVKQIMRIEGKIDRLIKDRHIVDPIMRFNREEIRERPKTSSLIDDSSVYGREEDKDVIVNMLLTTHNSNHVNLSILPIVGMGGVGKTTLTQLVYNDVRVKKHFQLRMWLCVSENFDEAKLTKETIESVASGLSSATTNMNLLQEDLSNKLKGKRFLLVLDDVWNEDPDRWDRYRRALVAGAKGSKIMVTTRNENVGKLMGGLTPYYLKQLSYNDSWHLFRSYAFVDGDSSAHPNLEMIGKEIVHKLKGLPLAAKALGSLLCAKDNEDDWKNILESEIWELPSDKNNILPALRLSYNHLPPILKRCFAFCSVFHKDYVFEKDILVQIWMAVGYIQPQGRRRMEEIGNNYFDELLSRSFFQKHKDGYVMHDAMHDLAQSVSIDECMRLDNLPNNSTTERNARHLSFSCDNKSQTTFEAFRGFNRARSLLLLNGYKSKTSSIPSDLFLNLRYLHVLDLNRQEITELPESVGKLKMLRYLNLSGTGVRKLPSSIGKLYCLQTLKLRNCLALDHLPKSMTNLVNLRSLEARTELITGIARIGKLTCLQKLEEFVVRKDKGYKVSELKAMNKIRGQICIKNLESVSSAEEADEALLSEKAHISILDLIWSNSRDFTSEEANQDIETLTSLEPHDELKELTVKAFAGFEFPYWINGLSHLQSIHLSDCTNCSILPALGQLPLLKVIIIGGFPTIIKIGDEFSGTSEVKGFPSLKELVFEDMPNLERWTSTQDGEFLPFLRELQVLDCPKVTELPLLPSTLVELKISEAGFSVLPEVHAPSSQFVPSLTRLQIHKCPNLTSLQQGLLSQQLSALQQLTITNCPELIHPPTEGLRTLTALQSLHIYDCPRLATAEHRGLLPHMIEDLRITSCSNIINPLLDELNELFALKNLVIADCVSLNTFPEKLPATLQKLDIFNCSNLASLPAGLQEASCLKTMTILNCVSIKCLPAHGLPLSLEELYIKECPFLAERCQENSGEDWPKISHIAIIEIDDDSAMPDRSIRRRLC |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0021770 | OsLima_05g0021770.01 | Chr05 | 25346822 | 25350187 | + | NAM | ||
| CDS seq | atgccagtcggagaagctgtgctgtccgcgttcatgcaggcgcttttcgagaaagcggtggccgctgcttccagcgagctgaaattccctcaaaacatagctgtagagctgcagaatctatcaagcagtctgtcgacaattcaggctcacgttgaagatgcagaggagcggcagctgaaagatcaggcggcaagaagctggctttccaggctcaaggacgtcgcgtatgagatggatgacctgcttgatgagcatgctgctggagtcctccgatccaaacttgcagacccatccaactatcaccatctgaaggttagaatctgcttctgctgcatttggttgaaaaatgggttatttaacagagatttagtaaaacaaataatgcggattgaggggaagatcgataggcttattaaagacagacatattgtcgatccaatcatgaggtttaacagggaagagataagagagaggcccaagaccagttcgttaattgacgactcgagtgtgtatggtagagaagaagataaagacgtcattgtaaacatgttactcaccacgcataactcaaaccatgtcaacctttctattcttcccatagtgggtatgggaggagtagggaagacaactttaacacagctcgtctacaatgatgtgagagtaaagaagcatttccagttaagaatgtggctgtgtgtttctgaaaactttgatgaggcaaaacttaccaaggaaacgatagaatcagttgcgagcggattatcatccgccacaacaaacatgaacttgcttcaagaagacctctcaaacaagctgaaaggcaaaaggtttcttctagtattggatgatgtatggaatgaggatcctgatagatgggatagataccgacgtgctctagttgctggtgcaaaaggaagcaaaattatggtgactactcgaaatgaaaatgttgggaaattaatgggcgggttgactccttactatctaaaacagttatcatacaatgatagctggcatttAttcagaagctatgcatttgtagatggtgactccagtgcacacccaaatttggaaatgatcggcaaggaaattgtccataagttgaaaggcctaccattagctgcaaaagctctaggtagcttattatgtgctaaggacaacgaggatgactggaaaaatatcctagaaagtgaaatatgggaattgccatcagacaagaataatatcttaccagctctgagactgagttacaATCatcttccacccatattgaagcgatgctttgcattctgctcggtctttcacaaagactatgtgtttgagaaagacatattggtccagatctggatggcagttgggtacatccagcctcaaggacggagaaggatggaagagattgggaaTaactattttgatgaattactgagcagatccttcttccaaaaacacaaggatggatacgtgatgcatgatgccatgcatgatctagcgcagtctgtctccattgatgaatgcatgagactggataatcttccaaacaatagcaccacagaaagaaatgccaggcacctatcattctcttgtgacaataaaagtcaaactacatttgaagcttttcgtggatttaatagagcacgaagccttctactgctgaatggatataaatcaaagacaagctctatccccagtgatctgttcctcaatttaaggtacctccatgtccttgatttgaaccgacaagaaattacagaattgccagaatctgttggaaaattaaagatgctccgatacttgaacctatcaggcactggtgtaagaaagctgccttcatcaattggtaagctctattgcttgcaaacacttaagttacgaaactgcctcgcattagatcacctcccaaaaagcatgactaatcttgtaaatctccgatccctcgaagcaagaactgaactgatcactggcatagccagaatagggaaattgacttgccttcaaaagttggaggaatttgttgtccgtaaggacaaaggatacaaggttagtgaattgaaggctatgaataagatcagaggacaaatctgcattaaaaatctagagagcgtatctagtgcggaagaagcagatgaagcattgctaagtgagaaggcacacatcagcattctagaccttatatggtccaatagcagggattttacttcagaagaagcaaaccaggacatagaaacactcacatcccttgaaccacatgatgaactcaaggagctgacagtcaaggcatttgcaggcttcgaatttccatattggataaatgggctctcacatttgcaaagtatccatctttctgactgtacaaattgttcaattctgccagcacttggacagctgcctctactcaaggttataatcattgggggttttcctaccattattaaaattggagatgagttttcaggtactagtgaagttaaggggtttccgtcactgaaagaacttgtatttgaagacatgcctaatctcgaaaggtggacttccacacaagatggtgagtttcttccattccttagagaacttcaagtgcttgactgcccaaaagtaacggaattgccactcctcccatcaacACTagtggaactgaaaatttctgaggcaggcttttccgtacttcctgaagttcatgctccaagttctcaatttgtaccatcattgacacgcctacagattcacaaatgccccaatctcacatccttacagcaaggattgcttagtcagcaattatcagCcctccagcaactaaccatcactaactgtccagaactaattcaccccccaactgaaggattacgaactttaactgctcttcagagtcttcacatttatgattgtccaaggctggcaacagcagaacatcgtggcttactacctcacatgattgaagatctacgcatcacctcatgctccaacataatcaatcctcttcttgatgaacttaatgagctctttgctctgaagaatcttgtcattgcggattgcgttagccttaatacttttccagaaaagttaccggctactctccaaaaattggacatcttcaattgcagtaatctggcctccttgcctgctggtttacaagaagcctcttgtctaaaaactatgactatcttaaattgtgttagcataaaatgcctgccagcacatggacttccgctgtccttagaagaattatacatcaaagagtgcccatttctggcagagaggtgtcaagaaaacagtggagaagattggcctaaaatatctcatatagccatcatagagattgacgatgatagtgccatgccagataggagcataaggagaagattatgctga
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| Protein seq | MPVGEAVLSAFMQALFEKAVAAASSELKFPQNIAVELQNLSSSLSTIQAHVEDAEERQLKDQAARSWLSRLKDVAYEMDDLLDEHAAGVLRSKLADPSNYHHLKVRICFCCIWLKNGLFNRDLVKQIMRIEGKIDRLIKDRHIVDPIMRFNREEIRERPKTSSLIDDSSVYGREEDKDVIVNMLLTTHNSNHVNLSILPIVGMGGVGKTTLTQLVYNDVRVKKHFQLRMWLCVSENFDEAKLTKETIESVASGLSSATTNMNLLQEDLSNKLKGKRFLLVLDDVWNEDPDRWDRYRRALVAGAKGSKIMVTTRNENVGKLMGGLTPYYLKQLSYNDSWHLFRSYAFVDGDSSAHPNLEMIGKEIVHKLKGLPLAAKALGSLLCAKDNEDDWKNILESEIWELPSDKNNILPALRLSYNHLPPILKRCFAFCSVFHKDYVFEKDILVQIWMAVGYIQPQGRRRMEEIGNNYFDELLSRSFFQKHKDGYVMHDAMHDLAQSVSIDECMRLDNLPNNSTTERNARHLSFSCDNKSQTTFEAFRGFNRARSLLLLNGYKSKTSSIPSDLFLNLRYLHVLDLNRQEITELPESVGKLKMLRYLNLSGTGVRKLPSSIGKLYCLQTLKLRNCLALDHLPKSMTNLVNLRSLEARTELITGIARIGKLTCLQKLEEFVVRKDKGYKVSELKAMNKIRGQICIKNLESVSSAEEADEALLSEKAHISILDLIWSNSRDFTSEEANQDIETLTSLEPHDELKELTVKAFAGFEFPYWINGLSHLQSIHLSDCTNCSILPALGQLPLLKVIIIGGFPTIIKIGDEFSGTSEVKGFPSLKELVFEDMPNLERWTSTQDGEFLPFLRELQVLDCPKVTELPLLPSTLVELKISEAGFSVLPEVHAPSSQFVPSLTRLQIHKCPNLTSLQQGLLSQQLSALQQLTITNCPELIHPPTEGLRTLTALQSLHIYDCPRLATAEHRGLLPHMIEDLRITSCSNIINPLLDELNELFALKNLVIADCVSLNTFPEKLPATLQKLDIFNCSNLASLPAGLQEASCLKTMTILNCVSIKCLPAHGLPLSLEELYIKECPFLAERCQENSGEDWPKISHIAIIEIDDDSAMPDRSIRRRLC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.089158 | 0.035980 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0492600 | RBH | 0.706392 | 0.059528 | 1.008493 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41310 | RBH | 0.566705 | 0.445670 | 0.476816 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0492600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021920 | RBH | 0.000000 | 4.385831 | 1.375443 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021880 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021810 | RBH | 0.000000 | 0.000000 | 0.334807 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021800 | RBH | 0.119214 | 0.040670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021910 | RBH | 0.311004 | 4.103502 | 4.237048 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0310000 | SBH | 4.394151 | 28.8432245 | 9.272139 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021460 | RBH | 0.000000 | 0.000000 | 0.224663 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0384500 | SBH | 2.032153 | 5.550104 | 5.3436935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036200 | RBH | 0.037284 | 0.036456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0021700 | RBH | 0.044141 | 3.029491 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021800 | RBH | 1.066444 | 7.906420 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021870 | RBH | 0.272173 | 0.070923 | 0.145617 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021850 | RBH | 0.035076 | 0.411964 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021290 | RBH | 0.093157 | 1.762174 | 0.842312 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0021700 | RBH | 1.126967 | 7.234449 | 3.237396 |
