Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os05g41310		OGI:05065520 \| 14/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr05:24197214-24200543		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		YR48
DNA seq		ATGCCAATCGGAGAAGCTGTGCTGTCCGCGTTCATGCAGGCGCTTTTCGAGAAAGCGGTGGCCGCTGCTTCCAGCGAGCTGAAATTCCCTCAAAACATAGCTGTGGAGCTGCAGAATCTATCAAGCAGTCTGTCGACAATTCTGGCTCACGTTGAAGATGCAGAGGAGCGGCAGCTGAAAGATCAGGCGGCAAGAAGCTGGCTTTCCAGGCTGAAGGACGTCGCCTATGAGATGGATGACCTGCTTGATGAGCATGCTGCTGAAGTCCTCCGATCCAAACTTGCAGGCCCATCCAACTATCACCATCTGAAGGTTAGAATCTGCTTCTGCTGCATTTGGTTGAAAAATGGGTTATTTAACAGAGATTTAGTAAAACAAATAATGCGGATTGAGGGGAAGATCGATAGGCTTATTAAAGACAGACATATTGTCGATCCGATCATGAGGTTTAACAGGGAAGAGATAAGAGAGAGGCCCAAGACCAGTTCGTTAATTGACGACTCGAGTGTGTATGGTAGAGAAGAAGATAAAGAGGTCATTGTAAACATGTTACTCACCACGAATAACTCAAACCATGTCAACCTTTCTATTCTTCCCATAGTGGGTATGGGAGGAGTAGGGAAGACAACTTTAACACAGCTCGTCTACAATGATGTGAGAGTAAAGAAGCATTTCCAGTTAAGAATGTGGCTGTGTGTTTCTGAAAACTTTGATGAGGCCAAACTTACCAAGGAAACGATAGAATCAGTTGCGAGCGGATTATCATCCGCCACAACAAACATGAACTTGCTTCAAGAAGACCTCTCAAACAAGCTGAAAGGCAAAAGGTTTCTTCTAGTATTGGATGATGTATGGAATGAGGATCCTGATAGATGGGATAGATACCGATGTGCTCTAGTTGCTGGTGCAAAAGGAAGTAAAATTATGGTGACTACTCGAAATGAAAATGTTGGGAAATTAGTGGGCGGGTTGACTCCTTACTATCTAAAACAGTTATCATACAATGATTGCTGGCATTTATTCAGAAGCTATGCATTTGCAGATGGTGACTCCAGTGCACACCCAAATTTGGAAATGATCGGCAAGGAAATTGTCCATAAGTTGAAAGGCCTACCATTAGCTGCAAGAGCTTTAGGTAGCTTATTATGTGCTAAGGACAACGAGGATGACTGGAAAAATATCCTAGAAAGTGAAATATGGGAATTGCCATCAGACAAGAATAATATCTTACCAGCTCTGAGACTGAGTTACAATCATCTTCCACCCATATTGAAGCGATGCTTTGCATTCTGCTCGGTCTTTCACAAAGACTATGTGTTTGAGAAAGACATATTGGTCCAGATCTGGATGGCAGTTGGGTACATCCAGCCTCAAGGGCGGAGAAGGATGGAAGAGATTGGGAATAACTATTTTGATGAATTACTGAGCAGATCCTTCTTCCAAAAACACAAGGATGGATACGTGATGCATGATGCCATGCATGACCTAGCGCAGTCTGTCTCCATTGACGAATGCATGAGACTGGATAATCTTCCAAACAATAGCACCACAGAAAGAAATGCCAGGCACCTATCATTCTCTTGTGACAATAAAAGTCAAACTACATTTGAAGCTTTTCGTGGATTTAATAGAGCACGGAGCCTTCTACTGCTGAATGGATATAAATCAAAGACAAGCTCTATCCCCAGTGATCTGTTCCTCAATTTAAGGTACCTCCATGTCCTTGATTTGAACCGACAAGAAATTACAGAATTGCCAGAATCTGTTGGAAAATTAAAGATGCTCCGATACTTGAACCTATCAGGCACTGTTGTAAGAAAGCTGCCTTCATCAATTGGTAAGCTCTATTGCTTGCAAACACTTAAGTTACGAAACTGCCTCGCATAATCTTGTAAATCTCCTATCCCTCGAAGCAAGAACTGAACTGATCACTGGCATAGCCAGAATAGGGAAATTGACTTGCCTTCAAAAGTTGGAGGAATTTGTTGTCCATAAGGACAAAGGATACAAGGTTAGTGAATTGAAGGCTATGAATAAGATCGGAGGACATATCTGCATTAAAAATCTAGAGAGCGTGTCTAGTGCGGAAGAAGCAGATGAAGCATTGCTAAGTGAGAAGGCACACATCAGCATTCTAGACCTTATATGGTCCAGTAGCAGGGATTTTACTTCAGAAGAAGCAAACCAGGACATAGAAACACTCACATCCCTCGAACCACATGATGAACTCAAGGAGCTGACAGTCAAGGCATTTGCAGGATTCGAATTTCCACATTGGATAGGCTCTCACATTTGCAAACTATCCATCTGTCTGACTGTACAAATTGTTCAATTCTGCCAGCACTTGGACAGCTGCCTCTACTCAAGGTTATAATCATTGGGGGTTTTCCTACCATTATTAAAATTGGAGATGAGTTTTCAGGTAGTAGTGAAGTTAAGGGGTTTCCGTCACTGAAAGAACTTGTATTTGAAGACACGCCTAATCTCGAAAGGTGGACTTCCACACAAGATGGTGAGTTTCTTCCATTCCTTAGAGAACTTCAAGTGCTTGACTGTCCCAAAGTAACAGAATTGCCACTTCTCCCATCAACACTAGTGGAACTGAAAATTTCTGAGGCAGGCTTTTCTGTACTTCCTGAAGTTCATGCTCCAAGATTTCTACCATCATTGACACGCCTACAGATTCACAAATGCCCCAATCTCACATCCTTGCAGCAAGGATTGCTTAGTCAGCAATTATCAGCCCTCCAGCAACTAACCATCACTAACTGTCCAGAACTAATTCACCCCCCAACTGAAGGATTACGAACTTTAACTGCTCTTCAGAGTCTTCACATTTATGATTGTCCAAGGCTGGCAACAGCAGAACATCGTGGCTTACTACCTCGCATGATTGAAGATCTACGCATCACCTCATGCTCCAACATAATCAATCCTCTTCTTGATGAACTTAATGAGCTCTTTGCTCTCAAGAATCTTGTCATTGCGGATTGCGTTAGCCTTAATACTTTTCCAGAAAAGTTACCGGCTACCCTCAAAAAATTGGAGATCTTCAATTGCAGTAATCTGGCCTCCTTGCCTGCTTGTTTACAAGAAGCCTCTTGTCTAAAAACTATGACTATCTTAAATTGTGTTAGCATAAAATGCTTGCCAGCACATGGACTTCCACTGTCCTTAGAAGAATTATACATCAAAGAGTGCCCATTTCTGGCAGAGAGGTGTCAAGAAAACAGTGGAGAAGATTGGCCTAAAATATCTCATATAGCCATCATAGAGATTGACGATGATAGTGCCATGCCAGATAGGAGCATAAGGAGAAGATTATGCTAA More
CDS seq		ATGCCAATCGGAGAAGCTGTGCTGTCCGCGTTCATGCAGGCGCTTTTCGAGAAAGCGGTGGCCGCTGCTTCCAGCGAGCTGAAATTCCCTCAAAACATAGCTGTGGAGCTGCAGAATCTATCAAGCAGTCTGTCGACAATTCTGGCTCACGTTGAAGATGCAGAGGAGCGGCAGCTGAAAGATCAGGCGGCAAGAAGCTGGCTTTCCAGGCTGAAGGACGTCGCCTATGAGATGGATGACCTGCTTGATGAGCATGCTGCTGAAGTCCTCCGATCCAAACTTGCAGGCCCATCCAACTATCACCATCTGAAGGTTAGAATCTGCTTCTGCTGCATTTGGTTGAAAAATGGGTTATTTAACAGAGATTTAGTAAAACAAATAATGCGGATTGAGGGGAAGATCGATAGGCTTATTAAAGACAGACATATTGTCGATCCGATCATGAGGTTTAACAGGGAAGAGATAAGAGAGAGGCCCAAGACCAGTTCGTTAATTGACGACTCGAGTGTGTATGGTAGAGAAGAAGATAAAGAGGTCATTGTAAACATGTTACTCACCACGAATAACTCAAACCATGTCAACCTTTCTATTCTTCCCATAGTGGGTATGGGAGGAGTAGGGAAGACAACTTTAACACAGCTCGTCTACAATGATGTGAGAGTAAAGAAGCATTTCCAGTTAAGAATGTGGCTGTGTGTTTCTGAAAACTTTGATGAGGCCAAACTTACCAAGGAAACGATAGAATCAGTTGCGAGCGGATTATCATCCGCCACAACAAACATGAACTTGCTTCAAGAAGACCTCTCAAACAAGCTGAAAGGCAAAAGGTTTCTTCTAGTATTGGATGATGTATGGAATGAGGATCCTGATAGATGGGATAGATACCGATGTGCTCTAGTTGCTGGTGCAAAAGGAAGTAAAATTATGGTGACTACTCGAAATGAAAATGTTGGGAAATTAGTGGGCGGGTTGACTCCTTACTATCTAAAACAGTTATCATACAATGATTGCTGGCATTTATTCAGAAGCTATGCATTTGCAGATGGTGACTCCAGTGCACACCCAAATTTGGAAATGATCGGCAAGGAAATTGTCCATAAGTTGAAAGGCCTACCATTAGCTGCAAGAGCTTTAGGTAGCTTATTATGTGCTAAGGACAACGAGGATGACTGGAAAAATATCCTAGAAAGTGAAATATGGGAATTGCCATCAGACAAGAATAATATCTTACCAGCTCTGAGACTGAGTTACAATCATCTTCCACCCATATTGAAGCGATGCTTTGCATTCTGCTCGGTCTTTCACAAAGACTATGTGTTTGAGAAAGACATATTGGTCCAGATCTGGATGGCAGTTGGGTACATCCAGCCTCAAGGGCGGAGAAGGATGGAAGAGATTGGGAATAACTATTTTGATGAATTACTGAGCAGATCCTTCTTCCAAAAACACAAGGATGGATACGTGATGCATGATGCCATGCATGACCTAGCGCAGTCTGTCTCCATTGACGAATGCATGAGACTGGATAATCTTCCAAACAATAGCACCACAGAAAGAAATGCCAGGCACCTATCATTCTCTTGTGACAATAAAAGTCAAACTACATTTGAAGCTTTTCGTGGATTTAATAGAGCACGGAGCCTTCTACTGCTGAATGGATATAAATCAAAGACAAGCTCTATCCCCAGTGATCTGTTCCTCAATTTAAGGTACCTCCATGTCCTTGATTTGAACCGACAAGAAATTACAGAATTGCCAGAATCTGTTGGAAAATTAAAGATGCTCCGATACTTGAACCTATCAGGCACTGTTGTAAGAAAGCTGCCTTCATCAATTGCAAGAACTGAACTGATCACTGGCATAGCCAGAATAGGGAAATTGACTTGCCTTCAAAAGTTGGAGGAATTTGTTGTCCATAAGGACAAAGGATACAAGGTTAGTGAATTGAAGGCTATGAATAAGATCGGAGGACATATCTGCATTAAAAATCTAGAGAGCGTGTCTAGTGCGGAAGAAGCAGATGAAGCATTGCTAACACTTGGACAGCTGCCTCTACTCAAGGTTATAATCATTGGGGGTTTTCCTACCATTATTAAAATTGGAGATGAGTTTTCAGGTAGTAGTGAAGTTAAGGGGTTTCCGTCACTGAAAGAACTTGTATTTGAAGACACGCCTAATCTCGAAAGGTGGACTTCCACACAAGATGGTGAGTTTCTTCCATTCCTTAGAGAACTTCAAGTGCTTGACTGTCCCAAAGTAACAGAATTGCCACTTCTCCCATCAACACTAGTGGAACTGAAAATTTCTGAGGCAGGCTTTTCTGTACTTCCTGAAGTTCATGCTCCAAGATTTCTACCATCATTGACACGCCTACAGATTCACAAATGCCCCAATCTCACATCCTTGCAGCAAGGATTGCTTAGTCAGCAATTATCAGCCCTCCAGCAACTAACCATCACTAACTGTCCAGAACTAATTCACCCCCCAACTGAAGGATTACGAACTTTAACTGCTCTTCAGAGTCTTCACATTTATGATTGTCCAAGGCTGGCAACAGCAGAACATCGTGGCTTACTACCTCGCATGATTGAAGATCTACGCATCACCTCATGCTCCAACATAATCAATCCTCTTCTTGATGAACTTAATGAGCTCTTTGCTCTCAAGAATCTTGTCATTGCGGATTGCGTTAGCCTTAATACTTTTCCAGAAAAGTTACCGGCTACCCTCAAAAAATTGGAGATCTTCAATTGCAGTAATCTGGCCTCCTTGCCTGCTTGTTTACAAGAAGCCTCTTGTCTAAAAACTATGACTATCTTAAATTGTGTTAGCATAAAATGCTTGCCAGCACATGGACTTCCACTGTCCTTAGAAGAATTATACATCAAAGAGTGCCCATTTCTGGCAGAGAGGTGTCAAGAAAACAGTGGAGAAGATTGGCCTAAAATATCTCATATAGCCATCATAGAGATTGACGATGATAGTGCCATGCCAGATAGGAGCATAAGGAGAAGATTATGCTAA More
Protein seq		MPIGEAVLSAFMQALFEKAVAAASSELKFPQNIAVELQNLSSSLSTILAHVEDAEERQLKDQAARSWLSRLKDVAYEMDDLLDEHAAEVLRSKLAGPSNYHHLKVRICFCCIWLKNGLFNRDLVKQIMRIEGKIDRLIKDRHIVDPIMRFNREEIRERPKTSSLIDDSSVYGREEDKEVIVNMLLTTNNSNHVNLSILPIVGMGGVGKTTLTQLVYNDVRVKKHFQLRMWLCVSENFDEAKLTKETIESVASGLSSATTNMNLLQEDLSNKLKGKRFLLVLDDVWNEDPDRWDRYRCALVAGAKGSKIMVTTRNENVGKLVGGLTPYYLKQLSYNDCWHLFRSYAFADGDSSAHPNLEMIGKEIVHKLKGLPLAARALGSLLCAKDNEDDWKNILESEIWELPSDKNNILPALRLSYNHLPPILKRCFAFCSVFHKDYVFEKDILVQIWMAVGYIQPQGRRRMEEIGNNYFDELLSRSFFQKHKDGYVMHDAMHDLAQSVSIDECMRLDNLPNNSTTERNARHLSFSCDNKSQTTFEAFRGFNRARSLLLLNGYKSKTSSIPSDLFLNLRYLHVLDLNRQEITELPESVGKLKMLRYLNLSGTVVRKLPSSIARTELITGIARIGKLTCLQKLEEFVVHKDKGYKVSELKAMNKIGGHICIKNLESVSSAEEADEALLTLGQLPLLKVIIIGGFPTIIKIGDEFSGSSEVKGFPSLKELVFEDTPNLERWTSTQDGEFLPFLRELQVLDCPKVTELPLLPSTLVELKISEAGFSVLPEVHAPRFLPSLTRLQIHKCPNLTSLQQGLLSQQLSALQQLTITNCPELIHPPTEGLRTLTALQSLHIYDCPRLATAEHRGLLPRMIEDLRITSCSNIINPLLDELNELFALKNLVIADCVSLNTFPEKLPATLKKLEIFNCSNLASLPACLQEASCLKTMTILNCVSIKCLPAHGLPLSLEELYIKECPFLAERCQENSGEDWPKISHIAIIEIDDDSAMPDRSIRRRLC
Function		Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os05g41310	LOC_Os05g41310.1	Chr05	24197214	24200543	+	MSU_osa1r7
CDS seq	ATGCCAATCGGAGAAGCTGTGCTGTCCGCGTTCATGCAGGCGCTTTTCGAGAAAGCGGTGGCCGCTGCTTCCAGCGAGCTGAAATTCCCTCAAAACATAGCTGTGGAGCTGCAGAATCTATCAAGCAGTCTGTCGACAATTCTGGCTCACGTTGAAGATGCAGAGGAGCGGCAGCTGAAAGATCAGGCGGCAAGAAGCTGGCTTTCCAGGCTGAAGGACGTCGCCTATGAGATGGATGACCTGCTTGATGAGCATGCTGCTGAAGTCCTCCGATCCAAACTTGCAGGCCCATCCAACTATCACCATCTGAAGGTTAGAATCTGCTTCTGCTGCATTTGGTTGAAAAATGGGTTATTTAACAGAGATTTAGTAAAACAAATAATGCGGATTGAGGGGAAGATCGATAGGCTTATTAAAGACAGACATATTGTCGATCCGATCATGAGGTTTAACAGGGAAGAGATAAGAGAGAGGCCCAAGACCAGTTCGTTAATTGACGACTCGAGTGTGTATGGTAGAGAAGAAGATAAAGAGGTCATTGTAAACATGTTACTCACCACGAATAACTCAAACCATGTCAACCTTTCTATTCTTCCCATAGTGGGTATGGGAGGAGTAGGGAAGACAACTTTAACACAGCTCGTCTACAATGATGTGAGAGTAAAGAAGCATTTCCAGTTAAGAATGTGGCTGTGTGTTTCTGAAAACTTTGATGAGGCCAAACTTACCAAGGAAACGATAGAATCAGTTGCGAGCGGATTATCATCCGCCACAACAAACATGAACTTGCTTCAAGAAGACCTCTCAAACAAGCTGAAAGGCAAAAGGTTTCTTCTAGTATTGGATGATGTATGGAATGAGGATCCTGATAGATGGGATAGATACCGATGTGCTCTAGTTGCTGGTGCAAAAGGAAGTAAAATTATGGTGACTACTCGAAATGAAAATGTTGGGAAATTAGTGGGCGGGTTGACTCCTTACTATCTAAAACAGTTATCATACAATGATTGCTGGCATTTATTCAGAAGCTATGCATTTGCAGATGGTGACTCCAGTGCACACCCAAATTTGGAAATGATCGGCAAGGAAATTGTCCATAAGTTGAAAGGCCTACCATTAGCTGCAAGAGCTTTAGGTAGCTTATTATGTGCTAAGGACAACGAGGATGACTGGAAAAATATCCTAGAAAGTGAAATATGGGAATTGCCATCAGACAAGAATAATATCTTACCAGCTCTGAGACTGAGTTACAATCATCTTCCACCCATATTGAAGCGATGCTTTGCATTCTGCTCGGTCTTTCACAAAGACTATGTGTTTGAGAAAGACATATTGGTCCAGATCTGGATGGCAGTTGGGTACATCCAGCCTCAAGGGCGGAGAAGGATGGAAGAGATTGGGAATAACTATTTTGATGAATTACTGAGCAGATCCTTCTTCCAAAAACACAAGGATGGATACGTGATGCATGATGCCATGCATGACCTAGCGCAGTCTGTCTCCATTGACGAATGCATGAGACTGGATAATCTTCCAAACAATAGCACCACAGAAAGAAATGCCAGGCACCTATCATTCTCTTGTGACAATAAAAGTCAAACTACATTTGAAGCTTTTCGTGGATTTAATAGAGCACGGAGCCTTCTACTGCTGAATGGATATAAATCAAAGACAAGCTCTATCCCCAGTGATCTGTTCCTCAATTTAAGGTACCTCCATGTCCTTGATTTGAACCGACAAGAAATTACAGAATTGCCAGAATCTGTTGGAAAATTAAAGATGCTCCGATACTTGAACCTATCAGGCACTGTTGTAAGAAAGCTGCCTTCATCAATTGCAAGAACTGAACTGATCACTGGCATAGCCAGAATAGGGAAATTGACTTGCCTTCAAAAGTTGGAGGAATTTGTTGTCCATAAGGACAAAGGATACAAGGTTAGTGAATTGAAGGCTATGAATAAGATCGGAGGACATATCTGCATTAAAAATCTAGAGAGCGTGTCTAGTGCGGAAGAAGCAGATGAAGCATTGCTAACACTTGGACAGCTGCCTCTACTCAAGGTTATAATCATTGGGGGTTTTCCTACCATTATTAAAATTGGAGATGAGTTTTCAGGTAGTAGTGAAGTTAAGGGGTTTCCGTCACTGAAAGAACTTGTATTTGAAGACACGCCTAATCTCGAAAGGTGGACTTCCACACAAGATGGTGAGTTTCTTCCATTCCTTAGAGAACTTCAAGTGCTTGACTGTCCCAAAGTAACAGAATTGCCACTTCTCCCATCAACACTAGTGGAACTGAAAATTTCTGAGGCAGGCTTTTCTGTACTTCCTGAAGTTCATGCTCCAAGATTTCTACCATCATTGACACGCCTACAGATTCACAAATGCCCCAATCTCACATCCTTGCAGCAAGGATTGCTTAGTCAGCAATTATCAGCCCTCCAGCAACTAACCATCACTAACTGTCCAGAACTAATTCACCCCCCAACTGAAGGATTACGAACTTTAACTGCTCTTCAGAGTCTTCACATTTATGATTGTCCAAGGCTGGCAACAGCAGAACATCGTGGCTTACTACCTCGCATGATTGAAGATCTACGCATCACCTCATGCTCCAACATAATCAATCCTCTTCTTGATGAACTTAATGAGCTCTTTGCTCTCAAGAATCTTGTCATTGCGGATTGCGTTAGCCTTAATACTTTTCCAGAAAAGTTACCGGCTACCCTCAAAAAATTGGAGATCTTCAATTGCAGTAATCTGGCCTCCTTGCCTGCTTGTTTACAAGAAGCCTCTTGTCTAAAAACTATGACTATCTTAAATTGTGTTAGCATAAAATGCTTGCCAGCACATGGACTTCCACTGTCCTTAGAAGAATTATACATCAAAGAGTGCCCATTTCTGGCAGAGAGGTGTCAAGAAAACAGTGGAGAAGATTGGCCTAAAATATCTCATATAGCCATCATAGAGATTGACGATGATAGTGCCATGCCAGATAGGAGCATAAGGAGAAGATTATGCTAA More
Protein seq	MPIGEAVLSAFMQALFEKAVAAASSELKFPQNIAVELQNLSSSLSTILAHVEDAEERQLKDQAARSWLSRLKDVAYEMDDLLDEHAAEVLRSKLAGPSNYHHLKVRICFCCIWLKNGLFNRDLVKQIMRIEGKIDRLIKDRHIVDPIMRFNREEIRERPKTSSLIDDSSVYGREEDKEVIVNMLLTTNNSNHVNLSILPIVGMGGVGKTTLTQLVYNDVRVKKHFQLRMWLCVSENFDEAKLTKETIESVASGLSSATTNMNLLQEDLSNKLKGKRFLLVLDDVWNEDPDRWDRYRCALVAGAKGSKIMVTTRNENVGKLVGGLTPYYLKQLSYNDCWHLFRSYAFADGDSSAHPNLEMIGKEIVHKLKGLPLAARALGSLLCAKDNEDDWKNILESEIWELPSDKNNILPALRLSYNHLPPILKRCFAFCSVFHKDYVFEKDILVQIWMAVGYIQPQGRRRMEEIGNNYFDELLSRSFFQKHKDGYVMHDAMHDLAQSVSIDECMRLDNLPNNSTTERNARHLSFSCDNKSQTTFEAFRGFNRARSLLLLNGYKSKTSSIPSDLFLNLRYLHVLDLNRQEITELPESVGKLKMLRYLNLSGTVVRKLPSSIARTELITGIARIGKLTCLQKLEEFVVHKDKGYKVSELKAMNKIGGHICIKNLESVSSAEEADEALLTLGQLPLLKVIIIGGFPTIIKIGDEFSGSSEVKGFPSLKELVFEDTPNLERWTSTQDGEFLPFLRELQVLDCPKVTELPLLPSTLVELKISEAGFSVLPEVHAPRFLPSLTRLQIHKCPNLTSLQQGLLSQQLSALQQLTITNCPELIHPPTEGLRTLTALQSLHIYDCPRLATAEHRGLLPRMIEDLRITSCSNIINPLLDELNELFALKNLVIADCVSLNTFPEKLPATLKKLEIFNCSNLASLPACLQEASCLKTMTILNCVSIKCLPAHGLPLSLEELYIKECPFLAERCQENSGEDWPKISHIAIIEIDDDSAMPDRSIRRRLC More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.566705	0.445670	0.476816

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0492600	RBH	0.706392	0.059528	1.008493
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g58510	RBH	0.0	0.026620	0.128649
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0492600	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0021920	RBH	0.000000	4.385831	1.375443
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0021880	RBH	0.000000	0.000000	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0021810	RBH	0.000000	0.000000	0.334807
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0021800	RBH	0.119214	0.040670	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0021910	RBH	0.311004	4.103502	4.237048
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0280500	SBH	0.3240555	1.5596135	0.9447545
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0021460	RBH	0.000000	0.000000	0.224663
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0384500	SBH	2.032153	5.550104	5.3436935
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0021770	RBH	0.089158	0.035980	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0021700	RBH	0.044141	3.029491	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0021800	RBH	1.066444	7.906420	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0021870	RBH	0.272173	0.070923	0.145617
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0021850	RBH	0.035076	0.411964	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G021290	RBH	0.093157	1.762174	0.842312
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0021700	RBH	1.126967	7.234449	3.237396

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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