Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0021080 | OGI:04026240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:24913045-24913896 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaggccaagcgccggcatgaggacaagctcaatcaaatttttcagaagctggaggagatagaggcttgtaggagcaaggcttccgaggagacgattgctgccatcagggcaaccaccgccatcctcaaggctgcatcatctccgacacctatggcaccacctcctccagtgcccaccaactgtttgatggaatgccacaacaacaacatcactttggtggcagtgaattcaagtcacatcggcgaggtacttaacccgatggttgcctttgagcttggggacgttgaggacaaggatcccgtcccctacattgtcaacaaggattcccgtgacaaggatgactccctgctcaatctcgacacatccaacgtcattccagtgattgcagcctcctcaacaagcttgcttgttcatgccgaaactgattccatgatgttcgctaagtgtttgaagttgggtctaaatgtcaacactagtactgtccagactggggttgtgttcccactctttcttgacgaactggacatcatcacagcaccaggggagtccatgctagtcatggtgcaaaggttgggttctgttttcttccttaaaatgctggcgcatgacgggtgttcgatgaaatgtgctagagatgacaagttgttgatggagccttccaacaagaatccatggccacccccttggttaggtggagtagttagagtatgtgagttgaggcatgccccatggacagaattgaactcttgttgggcaacagggcatttaatgccaccatggccaccaccaattcgaccatggcccccatcacaacaagcaagtttcagatttgtgccTtttTCAAGCTAG
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| CDS seq | atggaggccaagcgccggcatgaggacaagctcaatcaaatttttcagaagctggaggagatagaggcttgtaggagcaaggcttccgaggagacgattgctgccatcagggcaaccaccgccatcctcaaggctgcatcatctccgacacctatggcaccacctcctccagtgcccaccaactgtttgatggaatgccacaacaacaacatcactttggtggcagtgaattcaagtcacatcggcgaggtacttaacccgatggttgcctttgagcttggggacgttgaggacaaggatcccgtcccctacattgtcaacaaggattcccgtgacaaggatgactccctgctcaatctcgacacatccaacgtcattccagtgattgcagcctcctcaacaagcttgcttgttcatgccgaaactgattccatgatgttcgctaagtgtttgaagttgggtctaaatgtcaacactagtactgtccagactggggttgtgttcccactctttcttgacgaactggacatcatcacagcaccaggggagtccatgctagtcatggtgcaaaggttgggttctgttttcttccttaaaatgctggcgcatgacgggtgttcgatgaaatgtgctagagatgacaagttgttgatggagccttccaacaagaatccatggccacccccttggttaggtggagtagttagagtatgtgagttgaggcatgccccatggacagaattgaactcttgttgggcaacagggcatttaatgccaccatggccaccaccaattcgaccatggcccccatcacaacaagcaagtttcagatttgtgccTtttTCAAGCTAG
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| Protein seq | MEAKRRHEDKLNQIFQKLEEIEACRSKASEETIAAIRATTAILKAASSPTPMAPPPPVPTNCLMECHNNNITLVAVNSSHIGEVLNPMVAFELGDVEDKDPVPYIVNKDSRDKDDSLLNLDTSNVIPVIAASSTSLLVHAETDSMMFAKCLKLGLNVNTSTVQTGVVFPLFLDELDIITAPGESMLVMVQRLGSVFFLKMLAHDGCSMKCARDDKLLMEPSNKNPWPPPWLGGVVRVCELRHAPWTELNSCWATGHLMPPWPPPIRPWPPSQQASFRFVPFSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0021080 | OsLima_05g0021080.01 | Chr05 | 24913045 | 24913896 | + | NAM | ||
| CDS seq | atggaggccaagcgccggcatgaggacaagctcaatcaaatttttcagaagctggaggagatagaggcttgtaggagcaaggcttccgaggagacgattgctgccatcagggcaaccaccgccatcctcaaggctgcatcatctccgacacctatggcaccacctcctccagtgcccaccaactgtttgatggaatgccacaacaacaacatcactttggtggcagtgaattcaagtcacatcggcgaggtacttaacccgatggttgcctttgagcttggggacgttgaggacaaggatcccgtcccctacattgtcaacaaggattcccgtgacaaggatgactccctgctcaatctcgacacatccaacgtcattccagtgattgcagcctcctcaacaagcttgcttgttcatgccgaaactgattccatgatgttcgctaagtgtttgaagttgggtctaaatgtcaacactagtactgtccagactggggttgtgttcccactctttcttgacgaactggacatcatcacagcaccaggggagtccatgctagtcatggtgcaaaggttgggttctgttttcttccttaaaatgctggcgcatgacgggtgttcgatgaaatgtgctagagatgacaagttgttgatggagccttccaacaagaatccatggccacccccttggttaggtggagtagttagagtatgtgagttgaggcatgccccatggacagaattgaactcttgttgggcaacagggcatttaatgccaccatggccaccaccaattcgaccatggcccccatcacaacaagcaagtttcagatttgtgccTtttTCAAGCTAG
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| Protein seq | MEAKRRHEDKLNQIFQKLEEIEACRSKASEETIAAIRATTAILKAASSPTPMAPPPPVPTNCLMECHNNNITLVAVNSSHIGEVLNPMVAFELGDVEDKDPVPYIVNKDSRDKDDSLLNLDTSNVIPVIAASSTSLLVHAETDSMMFAKCLKLGLNVNTSTVQTGVVFPLFLDELDIITAPGESMLVMVQRLGSVFFLKMLAHDGCSMKCARDDKLLMEPSNKNPWPPPWLGGVVRVCELRHAPWTELNSCWATGHLMPPWPPPIRPWPPSQQASFRFVPFSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.047491 | 0.071308 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34490 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017330 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0001860 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026110 | RBH | 0.796305 | 0.0 | 2.281479 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017160 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004820 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0428900 | RBH | 0.783671 | 1.4138285 | 0.6814885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004890 | SBH | 0.284528 | 0.180087 | 0.088891 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0322400 | SBH | 0.3363885 | 0.538092 | 2.6156805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004690 | RBH | 0.114629 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0027850 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021170 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004900 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004980 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004790 | SBH | 0.000000 | 0.000000 | 0.000000 |
