Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0020780 | OGI:05064060 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:24703156-24706788 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagtccgcggtggcgagcgcattcttgaaggccgtgatggggaggctgttcatggcgctggagaaggagtacagcaagcacaagggcctcgcgcaagaagcccagtccctccagctcgacctccgcatgatcgccgccgtcatggacgaccagctccgcgccatggggagggcgacgacggccgacgcccgcacggccgtcgcgcggctccacgccgaggagatgctcgacctcgcgcacgacgtcgaggagtgcgtcgaccgcttcctgcaccgcctcacctgcaggcagcaccgcggcggcgccggcgccggagcgtcgtcgtcgtccttggtgcggcggatggcgcacgagctcagcaaggtccagagccggtcgagcttcgccgacgagatccagaggctcaagacgcgcgtcagggaagcgcagcagcggatcatccgcatgaaacctactttggatgtcctcgccggcggtggcggtggcggcggccaactcacaggcgctgccggcacatcgtcgacggcgccgtcgtgccgcgcgtcgcgcatcccggtgggcatcgcggagcccgtggaggagctcctgtcgatgctggacgaggtggacggcgagccggagcagatgagggtcatctccgtcgtcggattcggtggctccgggaagaccaccctcgtgaaggcggtctacgatgatcctcgcgcaaaggacagattctcccgccgcgcgtgggtcaccgtcggtagctcgccgtcgccggagaccagcaatgggatgaaggggatcctgcgtgctgtattccagcaggttcttcccaaagacgccatggatgctgacggacagcatcttgaaacctcgctcaaagaatacctgaaggacaagaggttagtgcacatttaacatttttcttttttttttgaactactttcatatgcaaaatttaacttttaattggacttttgctcctcattcatcaatttgactgtcgtgtgtatatattgatcagggttcactgttttggaatcccaaaaaaaaaatcagggaaaggaaatttcagacaaaaaaatagttttgaaaacttctttgctaaattcaaacaaattctgaaaacaggcactcaccggtggacacaaatatttgaatcaagattatgaaccctgttaccctgatactgatcagcagaatttatgttttaccacttaattttgctactcatttctcaatttggttattaggtatttaattatcatcgatgacatcgggatggatcaatggaacatcataagatcgacctttgaagacaatggtacaagcagcaggataatactgaccacaaccatccagtctgtggcaaatatgtgcagccatggcaatggctatgtgtatcaaatgaacacacttggtgaagaagactctaaggaactcgcttttccagggtttagatcacctgagttggagcaaggttcagcatcattattggggaaatgtgatggtcttcctcttgctctggtcagtgtctccgattatctgaagagctcaaatgagcccacaggagagctgtgcgcaaagctgtgccgcaaccttggttctcatctgaaagagcaggatggccattacagcttttcagaactcagaaaggtgctccttgacaactatgacagtttttctggctatcctttgagctgcttgctgtatcttggaatatttccaaacaatcgaccactcaagaagaaagttgtaatcaggcggtggttagccgaaggatatgcacgaaccgactctcttcgtagcgaagaggatattgctgatgagaatttcagtaagcttattgaccggaatatcattcagcctgttgacacaagaaacaattctgaagtgaaaacctgcaaaactcatggaattatgcacgagtttttgctgaacaagtccttgtcacagatattcatcgcgaaatcgtctcgtgatcatccaagactaggtgtcaatactaatgcgtgccaccTttcttttcattctggtgaactgacagagtgtgtggcatctgatgaagagttatctcgtgtccggtctctgacagtctttgggcatgcaggtgatgcaatttgttatgttcgcaggtgcaaactgatacgagtcttggatctacaggaatgcagtgatttggatgacgatcatctgaaatacatatgcaaattatggcatctgaaatacctgagctttgggagcaatatcagtgagcttccaaggagcattgatggactgcattgtttagagacactggatttaaggaggacccagataaagtttttgcccattgaagcaatcatgctgccccacttagctcacctgtttggaaagtttatgcttcatgaagatgatgtgaagagtgtgaacaagatgagtaaactacaaaaattcttttcttccaaaaagagcaatctgcaaactttagcaggatttatcactgacgaaagcaaaggttttctgcaacatattggtcatatgaacaagctgaggaaggttaagatatggttcaaacatgtcgaaggcagcaacaattacatcgctgatctttcacgggccattcaggaattcaccaaggctcccattgacagggatactgaccgttctctctcacttgattctgaagaatgccctgaaaatttcctgagttcacttgatttggagacatgctctgaaggttccaaatatgctctgaggtcgctaaagttaaatggcgaacttcacaagttgcctccatttgttaatttgttgtcaggtctcactgagctttgcatttcatcacctatgctgacacaggttcatctatcaacgctgatcaatctgaacagactgctctacctcaaactggttgcatataagctcgagaatttcgaaataaaacatggagcattcccgagcttgcgacgcctgtgctttgtagtgaaaagtgtcacttcagctctgcccacaatcaagcatggagctctcccaaatatcatatcacttcagctgctctgtcaaggtccagttggtctttctggcatcgagatcagacacatgaaacatctcaaggaaatcacaattaactctggagtggttgtacaatgggaacaggcagcaaagaaccacccaaataggcctaaagttttgttcctcagaaaggttgatccaatggaaagcgaggaacggggaagaccttgtgccataagggagcagatgaaaattactgtagctcaaccaactagttcaggtgatggactgaactctagcctcaataagatcagactttcagagcctccttcttcacgacttgagatgcctgttcgtcatatggtggatggccactgaggcagcaccccagacttccttggcaaacctctagcacaatataccactgcagctggcagacttcaatgaagaccatccaaattttgctaaaaaaacttggaaatctagattgctgttcagttaaatggtccagatttctgtatttccgtacttgtcatgttatgtggttaaggttgtaaattggcccggttttttgtaagttcagggtgttaaataaccatattttaaattcttaaaatacaatgatctgtgattggaggtgtgcaattgacctcttgc
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| CDS seq | atggagtccgcggtggcgagcgcattcttgaaggccgtgatggggaggctgttcatggcgctggagaaggagtacagcaagcacaagggcctcgcgcaagaagcccagtccctccagctcgacctccgcatgatcgccgccgtcatggacgaccagctccgcgccatggggagggcgacgacggccgacgcccgcacggccgtcgcgcggctccacgccgaggagatgctcgacctcgcgcacgacgtcgaggagtgcgtcgaccgcttcctgcaccgcctcacctgcaggcagcaccgcggcggcgccggcgccggagcgtcgtcgtcgtccttggtgcggcggatggcgcacgagctcagcaaggtccagagccggtcgagcttcgccgacgagatccagaggctcaagacgcgcgtcagggaagcgcagcagcggatcatccgcatgaaacctactttggatgtcctcgccggcggtggcggtggcggcggccaactcacaggcgctgccggcacatcgtcgacggcgccgtcgtgccgcgcgtcgcgcatcccggtgggcatcgcggagcccgtggaggagctcctgtcgatgctggacgaggtggacggcgagccggagcagatgagggtcatctccgtcgtcggattcggtggctccgggaagaccaccctcgtgaaggcggtctacgatgatcctcgcgcaaaggacagattctcccgccgcgcgtgggtcaccgtcggtagctcgccgtcgccggagaccagcaatgggatgaaggggatcctgcgtgctgtattccagcaggttcttcccaaagacgccatggatgctgacggacagcatcttgaaacctcgctcaaagaatacctgaaggacaagaggtatttaattatcatcgatgacatcgggatggatcaatggaacatcataagatcgacctttgaagacaatggtacaagcagcaggataatactgaccacaaccatccagtctgtggcaaatatgtgcagccatggcaatggctatgtgtatcaaatgaacacacttggtgaagaagactctaaggaactcgcttttccagggtttagatcacctgagttggagcaaggttcagcatcattattggggaaatgtgatggtcttcctcttgctctggtcagtgtctccgattatctgaagagctcaaatgagcccacaggagagctgtgcgcaaagctgtgccgcaaccttggttctcatctgaaagagcaggatggccattacagcttttcagaactcagaaaggtgctccttgacaactatgacagtttttctggctatcctttgagctgcttgctgtatcttggaatatttccaaacaatcgaccactcaagaagaaagttgtaatcaggcggtggttagccgaaggatatgcacgaaccgactctcttcgtagcgaagaggatattgctgatgagaatttcagtaagcttattgaccggaatatcattcagcctgttgacacaagaaacaattctgaagtgaaaacctgcaaaactcatggaattatgcacgagtttttgctgaacaagtccttgtcacagatattcatcgcgaaatcgtctcgtgatcatccaagactaggtgtcaatactaatgcgtgccaccTttcttttcattctggtgaactgacagagtgtgtggcatctgatgaagagttatctcgtgtccggtctctgacagtctttgggcatgcaggtgatgcaatttgttatgttcgcaggtgcaaactgatacgagtcttggatctacaggaatgcagtgatttggatgacgatcatctgaaatacatatgcaaattatggcatctgaaatacctgagctttgggagcaatatcagtgagcttccaaggagcattgatggactgcattgtttagagacactggatttaaggaggacccagataaagtttttgcccattgaagcaatcatgctgccccacttagctcacctgtttggaaagtttatgcttcatgaagatgatgtgaagagtgtgaacaagatgagtaaactacaaaaattcttttcttccaaaaagagcaatctgcaaactttagcaggatttatcactgacgaaagcaaaggttttctgcaacatattggtcatatgaacaagctgaggaaggttaagatatggttcaaacatgtcgaaggcagcaacaattacatcgctgatctttcacgggccattcaggaattcaccaaggctcccattgacagggatactgaccgttctctctcacttgattctgaagaatgccctgaaaatttcctgagttcacttgatttggagacatgctctgaaggttccaaatatgctctgaggtcgctaaagttaaatggcgaacttcacaagttgcctccatttgttaatttgttgtcaggtctcactgagctttgcatttcatcacctatgctgacacaggttcatctatcaacgctgatcaatctgaacagactgctctacctcaaactggttgcatataagctcgagaatttcgaaataaaacatggagcattcccgagcttgcgacgcctgtgctttgtagtgaaaagtgtcacttcagctctgcccacaatcaagcatggagctctcccaaatatcatatcacttcagctgctctgtcaaggtccagttggtctttctggcatcgagatcagacacatgaaacatctcaaggaaatcacaattaactctggagtggttgtacaatgggaacaggcagcaaagaaccacccaaataggcctaaagttttgttcctcagaaaggttgatccaatggaaagcgaggaacggggaagaccttgtgccataagggagcagatgaaaattactgtagctcaaccaactagttcaggtgatggactgaactctagcctcaataagatcagactttcagagcctccttcttcacgacttgagatgcctgttcgtcatatggtggatggccactga
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| Protein seq | MESAVASAFLKAVMGRLFMALEKEYSKHKGLAQEAQSLQLDLRMIAAVMDDQLRAMGRATTADARTAVARLHAEEMLDLAHDVEECVDRFLHRLTCRQHRGGAGAGASSSSLVRRMAHELSKVQSRSSFADEIQRLKTRVREAQQRIIRMKPTLDVLAGGGGGGGQLTGAAGTSSTAPSCRASRIPVGIAEPVEELLSMLDEVDGEPEQMRVISVVGFGGSGKTTLVKAVYDDPRAKDRFSRRAWVTVGSSPSPETSNGMKGILRAVFQQVLPKDAMDADGQHLETSLKEYLKDKRYLIIIDDIGMDQWNIIRSTFEDNGTSSRIILTTTIQSVANMCSHGNGYVYQMNTLGEEDSKELAFPGFRSPELEQGSASLLGKCDGLPLALVSVSDYLKSSNEPTGELCAKLCRNLGSHLKEQDGHYSFSELRKVLLDNYDSFSGYPLSCLLYLGIFPNNRPLKKKVVIRRWLAEGYARTDSLRSEEDIADENFSKLIDRNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLSQIFIAKSSRDHPRLGVNTNACHLSFHSGELTECVASDEELSRVRSLTVFGHAGDAICYVRRCKLIRVLDLQECSDLDDDHLKYICKLWHLKYLSFGSNISELPRSIDGLHCLETLDLRRTQIKFLPIEAIMLPHLAHLFGKFMLHEDDVKSVNKMSKLQKFFSSKKSNLQTLAGFITDESKGFLQHIGHMNKLRKVKIWFKHVEGSNNYIADLSRAIQEFTKAPIDRDTDRSLSLDSEECPENFLSSLDLETCSEGSKYALRSLKLNGELHKLPPFVNLLSGLTELCISSPMLTQVHLSTLINLNRLLYLKLVAYKLENFEIKHGAFPSLRRLCFVVKSVTSALPTIKHGALPNIISLQLLCQGPVGLSGIEIRHMKHLKEITINSGVVVQWEQAAKNHPNRPKVLFLRKVDPMESEERGRPCAIREQMKITVAQPTSSGDGLNSSLNKIRLSEPPSSRLEMPVRHMVDGH |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0020780 | OsLima_05g0020780.01 | Chr05 | 24703156 | 24706788 | + | NAM | ||
| CDS seq | atggagtccgcggtggcgagcgcattcttgaaggccgtgatggggaggctgttcatggcgctggagaaggagtacagcaagcacaagggcctcgcgcaagaagcccagtccctccagctcgacctccgcatgatcgccgccgtcatggacgaccagctccgcgccatggggagggcgacgacggccgacgcccgcacggccgtcgcgcggctccacgccgaggagatgctcgacctcgcgcacgacgtcgaggagtgcgtcgaccgcttcctgcaccgcctcacctgcaggcagcaccgcggcggcgccggcgccggagcgtcgtcgtcgtccttggtgcggcggatggcgcacgagctcagcaaggtccagagccggtcgagcttcgccgacgagatccagaggctcaagacgcgcgtcagggaagcgcagcagcggatcatccgcatgaaacctactttggatgtcctcgccggcggtggcggtggcggcggccaactcacaggcgctgccggcacatcgtcgacggcgccgtcgtgccgcgcgtcgcgcatcccggtgggcatcgcggagcccgtggaggagctcctgtcgatgctggacgaggtggacggcgagccggagcagatgagggtcatctccgtcgtcggattcggtggctccgggaagaccaccctcgtgaaggcggtctacgatgatcctcgcgcaaaggacagattctcccgccgcgcgtgggtcaccgtcggtagctcgccgtcgccggagaccagcaatgggatgaaggggatcctgcgtgctgtattccagcaggttcttcccaaagacgccatggatgctgacggacagcatcttgaaacctcgctcaaagaatacctgaaggacaagaggtatttaattatcatcgatgacatcgggatggatcaatggaacatcataagatcgacctttgaagacaatggtacaagcagcaggataatactgaccacaaccatccagtctgtggcaaatatgtgcagccatggcaatggctatgtgtatcaaatgaacacacttggtgaagaagactctaaggaactcgcttttccagggtttagatcacctgagttggagcaaggttcagcatcattattggggaaatgtgatggtcttcctcttgctctggtcagtgtctccgattatctgaagagctcaaatgagcccacaggagagctgtgcgcaaagctgtgccgcaaccttggttctcatctgaaagagcaggatggccattacagcttttcagaactcagaaaggtgctccttgacaactatgacagtttttctggctatcctttgagctgcttgctgtatcttggaatatttccaaacaatcgaccactcaagaagaaagttgtaatcaggcggtggttagccgaaggatatgcacgaaccgactctcttcgtagcgaagaggatattgctgatgagaatttcagtaagcttattgaccggaatatcattcagcctgttgacacaagaaacaattctgaagtgaaaacctgcaaaactcatggaattatgcacgagtttttgctgaacaagtccttgtcacagatattcatcgcgaaatcgtctcgtgatcatccaagactaggtgtcaatactaatgcgtgccaccTttcttttcattctggtgaactgacagagtgtgtggcatctgatgaagagttatctcgtgtccggtctctgacagtctttgggcatgcaggtgatgcaatttgttatgttcgcaggtgcaaactgatacgagtcttggatctacaggaatgcagtgatttggatgacgatcatctgaaatacatatgcaaattatggcatctgaaatacctgagctttgggagcaatatcagtgagcttccaaggagcattgatggactgcattgtttagagacactggatttaaggaggacccagataaagtttttgcccattgaagcaatcatgctgccccacttagctcacctgtttggaaagtttatgcttcatgaagatgatgtgaagagtgtgaacaagatgagtaaactacaaaaattcttttcttccaaaaagagcaatctgcaaactttagcaggatttatcactgacgaaagcaaaggttttctgcaacatattggtcatatgaacaagctgaggaaggttaagatatggttcaaacatgtcgaaggcagcaacaattacatcgctgatctttcacgggccattcaggaattcaccaaggctcccattgacagggatactgaccgttctctctcacttgattctgaagaatgccctgaaaatttcctgagttcacttgatttggagacatgctctgaaggttccaaatatgctctgaggtcgctaaagttaaatggcgaacttcacaagttgcctccatttgttaatttgttgtcaggtctcactgagctttgcatttcatcacctatgctgacacaggttcatctatcaacgctgatcaatctgaacagactgctctacctcaaactggttgcatataagctcgagaatttcgaaataaaacatggagcattcccgagcttgcgacgcctgtgctttgtagtgaaaagtgtcacttcagctctgcccacaatcaagcatggagctctcccaaatatcatatcacttcagctgctctgtcaaggtccagttggtctttctggcatcgagatcagacacatgaaacatctcaaggaaatcacaattaactctggagtggttgtacaatgggaacaggcagcaaagaaccacccaaataggcctaaagttttgttcctcagaaaggttgatccaatggaaagcgaggaacggggaagaccttgtgccataagggagcagatgaaaattactgtagctcaaccaactagttcaggtgatggactgaactctagcctcaataagatcagactttcagagcctccttcttcacgacttgagatgcctgttcgtcatatggtggatggccactga
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| Protein seq | MESAVASAFLKAVMGRLFMALEKEYSKHKGLAQEAQSLQLDLRMIAAVMDDQLRAMGRATTADARTAVARLHAEEMLDLAHDVEECVDRFLHRLTCRQHRGGAGAGASSSSLVRRMAHELSKVQSRSSFADEIQRLKTRVREAQQRIIRMKPTLDVLAGGGGGGGQLTGAAGTSSTAPSCRASRIPVGIAEPVEELLSMLDEVDGEPEQMRVISVVGFGGSGKTTLVKAVYDDPRAKDRFSRRAWVTVGSSPSPETSNGMKGILRAVFQQVLPKDAMDADGQHLETSLKEYLKDKRYLIIIDDIGMDQWNIIRSTFEDNGTSSRIILTTTIQSVANMCSHGNGYVYQMNTLGEEDSKELAFPGFRSPELEQGSASLLGKCDGLPLALVSVSDYLKSSNEPTGELCAKLCRNLGSHLKEQDGHYSFSELRKVLLDNYDSFSGYPLSCLLYLGIFPNNRPLKKKVVIRRWLAEGYARTDSLRSEEDIADENFSKLIDRNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLSQIFIAKSSRDHPRLGVNTNACHLSFHSGELTECVASDEELSRVRSLTVFGHAGDAICYVRRCKLIRVLDLQECSDLDDDHLKYICKLWHLKYLSFGSNISELPRSIDGLHCLETLDLRRTQIKFLPIEAIMLPHLAHLFGKFMLHEDDVKSVNKMSKLQKFFSSKKSNLQTLAGFITDESKGFLQHIGHMNKLRKVKIWFKHVEGSNNYIADLSRAIQEFTKAPIDRDTDRSLSLDSEECPENFLSSLDLETCSEGSKYALRSLKLNGELHKLPPFVNLLSGLTELCISSPMLTQVHLSTLINLNRLLYLKLVAYKLENFEIKHGAFPSLRRLCFVVKSVTSALPTIKHGALPNIISLQLLCQGPVGLSGIEIRHMKHLKEITINSGVVVQWEQAAKNHPNRPKVLFLRKVDPMESEERGRPCAIREQMKITVAQPTSSGDGLNSSLNKIRLSEPPSSRLEMPVRHMVDGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.032022 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0479800 | RBH | 0.151530 | 0.078023 | 0.185950 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g40160 | RBH | 0.100193 | 0.051310 | 0.046803 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0479800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021000 | RBH | 0.112611 | 0.777752 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020960 | RBH | 0.078285 | 0.655335 | 0.437120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020850 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020870 | RBH | 0.021729 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020940 | RBH | 0.318963 | 1.038193 | 1.032456 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0364700 | RBH | 0.780732 | 4.7822895 | 0.351188 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020540 | RBH | 0.058961 | 0.048872 | 0.074098 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0374700 | RBH | 0.705091 | 3.158991 | 2.336311 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036200 | SBH | 0.037284 | 0.036456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020760 | RBH | 0.108917 | 1.840973 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020830 | RBH | 0.0 | 5.765326 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020920 | RBH | 0.0 | 0.860749 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020360 | RBH | 0.130225 | 0.000000 | 0.108118 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020800 | RBH | 0.289608 | 0.000000 | 0.357944 |
