Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0017490 | OGI:05055700 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:21710101-21712428 | ||||||||
| Gene Symbol | NAC88, ONAC088, ONAC88, OsNAC52 | ||||||||||
| DNA seq | GTGGTTTCCATTTGCTCCTCGCCTAGCTAGCTTGTCTCTCTTCCCCGGAGGAGAAAAAGGAGGAGACGAGAGAGAATTAATTATCTCGGAGATGAGCGGCGGCGGCGAAGGGGCGGCGGCGGCGGAGAGGCAGGAGCTGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGtgatgcactacctctgccggcggtgcgccggcctccccatcgccgtccccatcatcgccgaggtcgacctctacaagttcgatccatggcatctcccaagtacgtctcttccatctccctcctccatccatgcaaacttatagctactgttcatcgatcgtccatgactccatgcaggaatggcgctgtacggcgagaaggagtggtacttcttctcccctcgggaccgcaagtacccgaacgggtcgcggccgaaccgcgccgccgggtccgggtactggaaggccaccggcgccgacaagccggtgggcacgccgaggccggtggccatcaagaaggcgctcgtcttctacgccggcaaggcgcccaagggcgacaagaccaactggatcatgcacgagtaccgcctcgccgacgtcgaccgctccgcccgcaagAagaacaccctccgggtacatatatacgccattaattaattacctcgaatttgctcttagttcatcaaattcaaattcagacgaattctactctcagttaatcaagtttagacaagaagttctagctgattggttatcggcacgatcgatatcatatgattttgatgtggattaaccacacaaaattcgatcgagatgctaattactgataagataagtacggacttttggaaggacaaatgattcctcttgctaggttaGcttaggttagcatctgtgtgccgctttcttgcaagtgtgaacgcggtggatgccggcgcgggtcaccacctccacacgcaaataatttactttgtctgttacacaatgtaagtcattctaacatttttcacattcatattgatgttatatctatattcattaaacattaatataaatgcgggaatatctatctagatttattaacattaatataaatgtgagaaatgctagaatgacttacatcgtgaaacggatagagtattgtataaacgctagctttaaattgcgggcgacgatagcgacggatgcgaggagatatgcacgcccaccaataatgcgcttcggaggaatttcgattattgttcataattattgctgatactgtttgttttacattaattgggcggatttcatcatatatttattgttgtgatcacgaaatgatatggtcttgatgaaatttgatttgatttttggtggtttgtgttattgcagctagatgattgggtcctgtgccgaatctacaacaagaaaggcggcgtggagaagccgagcggcggcggcggcggcgaacgttcgaatatgatgagccacggggagaccgcgtcggcgggctcgccgccggagcagaagccggccgtgctgccgccgccgccaccgccgtacgcggcggcggcgccgttctcggagctggcggcgttctacgacgtgcggccgtcggactcagtgccgcgggcgcacggcgcggactcgagctgctcggagcacgtgctgacgacgtcggcgtcgtccggcggcgtcgtcgagcggccggaggtgcagagccagcccaagatcgccgagtgggagcgcacgttcgccggcgccgccgccccggctggcgccgtcagcacggcaggaccgattctgggccagctcgaccccgccgccgccgccgccgccgtcgccggcggcggtgacccgctcctccaggacatcctcatgtactggggcaagccgttctgacggctcggctcggctcggcggcttgagccgggagggatgaatgatctgatattctatcggggtggctcgggcgagccgctggaatcgatcggtggccgttggatggcggccgagttattggtagccgtcagatgggagatggaatggcattagttagttactagtatccgtatggacggcggcgatgaaacaggggagccccgagatgcgtgtaggaaggagatgcatggtactgtactcgagaattataagccgtgtgtatatgcgaaattggttggctagatcgatctgggcgtatttctctctcgaggctcttgctatgtttttcatcttttttaaagaagactggacactttgtcgcatgcaacaaagcatgctgcatttttacaaggtgtcggcaatcatataattatgcacttgtatcagcattcaacatt
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| CDS seq | ATGAGCGGCGGCGGCGAAGGGGCGGCGGCGGCGGAGAGGCAGGAGCTGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGtgatgcactacctctgccggcggtgcgccggcctccccatcgccgtccccatcatcgccgaggtcgacctctacaagttcgatccatggcatctcccaagaatggcgctgtacggcgagaaggagtggtacttcttctcccctcgggaccgcaagtacccgaacgggtcgcggccgaaccgcgccgccgggtccgggtactggaaggccaccggcgccgacaagccggtgggcacgccgaggccggtggccatcaagaaggcgctcgtcttctacgccggcaaggcgcccaagggcgacaagaccaactggatcatgcacgagtaccgcctcgccgacgtcgaccgctccgcccgcaagAagaacaccctccggctagatgattgggtcctgtgccgaatctacaacaagaaaggcggcgtggagaagccgagcggcggcggcggcggcgaacgttcgaatatgatgagccacggggagaccgcgtcggcgggctcgccgccggagcagaagccggccgtgctgccgccgccgccaccgccgtacgcggcggcggcgccgttctcggagctggcggcgttctacgacgtgcggccgtcggactcagtgccgcgggcgcacggcgcggactcgagctgctcggagcacgtgctgacgacgtcggcgtcgtccggcggcgtcgtcgagcggccggaggtgcagagccagcccaagatcgccgagtgggagcgcacgttcgccggcgccgccgccccggctggcgccgtcagcacggcaggaccgattctgggccagctcgaccccgccgccgccgccgccgccgtcgccggcggcggtgacccgctcctccaggacatcctcatgtactggggcaagccgttctga
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| Protein seq | MSGGGEGAAAAERQELQLPPGFRFHPTDEELVVMHYLCRRCAGLPIAVPIIAEVDLYKFDPWHLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGTPRPVAIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGGVEKPSGGGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPPYAAAAPFSELAAFYDVRPSDSVPRAHGADSSCSEHVLTTSASSGGVVERPEVQSQPKIAEWERTFAGAAAPAGAVSTAGPILGQLDPAAAAAAVAGGGDPLLQDILMYWGKPF |
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| Function | NAC domain-containing protein 48 [UniProtKB/Swiss-Prot:Q7F2L3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0017490 | OsLima_05g0017490.01 | Chr05 | 21710101 | 21712428 | + | NAM | ||
| CDS seq | atggcgctgtacggcgagaaggagtggtacttcttctcccctcgggaccgcaagtacccgaacgggtcgcggccgaaccgcgccgccgggtccgggtactggaaggccaccggcgccgacaagccggtgggcacgccgaggccggtggccatcaagaaggcgctcgtcttctacgccggcaaggcgcccaagggcgacaagaccaactggatcatgcacgagtaccgcctcgccgacgtcgaccgctccgcccgcaagAagaacaccctccggctagatgattgggtcctgtgccgaatctacaacaagaaaggcggcgtggagaagccgagcggcggcggcggcggcgaacgttcgaatatgatgagccacggggagaccgcgtcggcgggctcgccgccggagcagaagccggccgtgctgccgccgccgccaccgccgtacgcggcggcggcgccgttctcggagctggcggcgttctacgacgtgcggccgtcggactcagtgccgcgggcgcacggcgcggactcgagctgctcggagcacgtgctgacgacgtcggcgtcgtccggcggcgtcgtcgagcggccggaggtgcagagccagcccaagatcgccgagtgggagcgcacgttcgccggcgccgccgccccggctggcgccgtcagcacggcaggaccgattctgggccagctcgaccccgccgccgccgccgccgccgtcgccggcggcggtgacccgctcctccaggacatcctcatgtactggggcaagccgttctga
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| Protein seq | MALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGTPRPVAIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGGVEKPSGGGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPPYAAAAPFSELAAFYDVRPSDSVPRAHGADSSCSEHVLTTSASSGGVVERPEVQSQPKIAEWERTFAGAAAPAGAVSTAGPILGQLDPAAAAAAVAGGGDPLLQDILMYWGKPF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0017490 | OsLima_05g0017490.02 | Chr05 | 21710101 | 21712428 | + | NAM | ||
| CDS seq | ATGAGCGGCGGCGGCGAAGGGGCGGCGGCGGCGGAGAGGCAGGAGCTGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGGtgatgcactacctctgccggcggtgcgccggcctccccatcgccgtccccatcatcgccgaggtcgacctctacaagttcgatccatggcatctcccaagaatggcgctgtacggcgagaaggagtggtacttcttctcccctcgggaccgcaagtacccgaacgggtcgcggccgaaccgcgccgccgggtccgggtactggaaggccaccggcgccgacaagccggtgggcacgccgaggccggtggccatcaagaaggcgctcgtcttctacgccggcaaggcgcccaagggcgacaagaccaactggatcatgcacgagtaccgcctcgccgacgtcgaccgctccgcccgcaagAagaacaccctccggctagatgattgggtcctgtgccgaatctacaacaagaaaggcggcgtggagaagccgagcggcggcggcggcggcgaacgttcgaatatgatgagccacggggagaccgcgtcggcgggctcgccgccggagcagaagccggccgtgctgccgccgccgccaccgccgtacgcggcggcggcgccgttctcggagctggcggcgttctacgacgtgcggccgtcggactcagtgccgcgggcgcacggcgcggactcgagctgctcggagcacgtgctgacgacgtcggcgtcgtccggcggcgtcgtcgagcggccggaggtgcagagccagcccaagatcgccgagtgggagcgcacgttcgccggcgccgccgccccggctggcgccgtcagcacggcaggaccgattctgggccagctcgaccccgccgccgccgccgccgccgtcgccggcggcggtgacccgctcctccaggacatcctcatgtactggggcaagccgttctga
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| Protein seq | MSGGGEGAAAAERQELQLPPGFRFHPTDEELVVMHYLCRRCAGLPIAVPIIAEVDLYKFDPWHLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGTPRPVAIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGGVEKPSGGGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPPYAAAAPFSELAAFYDVRPSDSVPRAHGADSSCSEHVLTTSASSGGVVERPEVQSQPKIAEWERTFAGAAAPAGAVSTAGPILGQLDPAAAAAAVAGGGDPLLQDILMYWGKPF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0017490 | OsLima_05g0017490.03 | Chr05 | 21710101 | 21712267 | + | IsoSeq | ||
| CDS seq | atgaatgatctgatattctatcggggtggctcgggcgagccgctggaatcgatcggtggccgttggatggcggccgagttattggtagccgtcagatgggagatggaatgg |
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| Protein seq | MNDLIFYRGGSGEPLESIGGRWMAAELLVAVRWEMEW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 21710740 | 21711486 | + | OsLima_05g0017490.01,OsLima_05g0017490.02 | OsLima_05g0017490.01,OsLima_05g0017490.03,OsLima_05g0017490.02 | All |
| A5 | Chr05 | 21710364 | 21710466 | + | OsLima_05g0017490.03,OsLima_05g0017490.02 | OsLima_05g0017490.02,OsLima_05g0017490.03,OsLima_05g0017490.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.054900 | 0.243168 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0421600 | RBH | 2.567943 | 2.974685 | 4.289868 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g34830 | RBH | 1.680375 | 1.989889 | 1.417925 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0421600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017600 | RBH | 0.965648 | 0.0 | 2.502761 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017600 | RBH | 0.0 | 0.000000 | 2.251394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017430 | RBH | 1.516300 | 6.188653 | 3.756696 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017440 | RBH | 0.404301 | 0.054938 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017650 | RBH | 5.770335 | 4.585781 | 1.366494 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0316400 | RBH | 3.967063 | 7.169496 | 55.946882 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017140 | RBH | 0.329362 | 0.159759 | 0.895809 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0326500 | RBH | 11.119925 | 51.0437125 | 2.2214565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0041670 | RBH | 1.632666 | 0.744833 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017380 | RBH | 0.379416 | 5.210990 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017520 | RBH | 0.0 | 6.769584 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017530 | RBH | 0.460396 | 0.925033 | 1.077758 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017580 | RBH | 0.165001 | 6.073799 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017070 | RBH | 0.567249 | 0.588633 | 1.373462 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017380 | RBH | 2.121232 | 1.816663 | 9.823773 |
