Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g34830 | OGI:05055700 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:20678001-20680343 | ||||||||
| Gene Symbol | NAC88, ONAC088, ONAC88, OsNAC52 | ||||||||||
| DNA seq | GTGGTTTCCATTTGCTCCTCGCCTAGCTAGCTTGTCTCTCTTCCCCGGAGGAGAAAAAGGAGGAGACGAGAGAGAATTAATTATCTCGGAGATGAGCGGCGGCGGCGAAGGGGCGGCGGCGGCGGAGAGGCAGGAGCTGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGATGCACTACCTCTGCCGGCGGTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGGTCGACCTCTACAAGTTCGATCCATGGCATCTCCCAAGTACGTCTCTTCCATCTCCCTCCTCCATCCATGCAAACTTATAGCTACTGTTCATCGATCGTCCATGACTCCATGCAGGAATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCTCGGGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCCGGGTACTGGAAGGCCACCGGCGCCGACAAGCCGGTGGGCACGCCGAGGCCGGTGGCCATCAAGAAGGCGCTCGTCTTCTACGCCGGCAAGGCGCCCAAGGGCGACAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACACCCTCCGGGTACATATATACGCCATTAATTAATTACCTCGAATTTGCTCTTAATTCATCAAATTCAAATTCAGACGAATTCTACTCTCAGTTAATCAAGTTTAGACAAGAAGTTCTAGCTGATTGGTTATCGGCACGATCGATATCATATGATTTTGATGTGGATTAACCACACAAAATTCGATCGAGATGCTAATTACTGATAAGATAAGTACGGACTTTTGGAAGGACAAATGATTCCTCTTGCTAGGTTAGCTTAGGTTAGCATCTGTGTGCCGCTTTCTTGCAAGTGTGAACGCGGTGGATGCCGGCGCGGGTCACCACCTCCACGCGCGCAAATAATTTACTTTCTCTGTTTCACGATGTAAGTTATTCTAATATTTTTCAAATTCATATTGATGTTCTATCTATATTCATTAAACATTAATATGAATGCGGAAATATTTATCTAGATTTATTAACATCAATATTAATATGAGAAATGATAGAATAACTTACATCGTGAAAGAGAGAGTATTGTATAAACGCTAAGCTTTAAATTGCGGGCGACGATAGCGACGGATGCGAGGAGATATGCACGCCCACCAATAATGCGCTTCGGAGGAATTTCGATTATTGTTCATAATTATTGCTGATACTGTTTGTTTTACATTAATTGGGCGGATTTCATCATATATTTATTGTTGTGATCACGAAATGATATGGTCTTGATGAAATTTGATTTGATTTTTGGTGGTTTGTGTTATTGCAGCTAGATGATTGGGTCCTGTGCCGAATCTACAACAAGAAAGGCGGCGTGGAGAAGCCGAGCGGCGGCGGCGGCGGCGAACGTTCGAATATGATGAGCCACGGGGAGACCGCGTCGGCGGGCTCGCCGCCGGAGCAGAAGCCGGCCGTGCTGCCGCCGCCGCCACCGCCGTACGCGGCGGCGGCGCCGTTCTCGGAGCTGGCGGCGTTCTACGACGTGCGGCCGTCGGACTCGGTGCCGCGGGCGCACGGCGCGGACTCGAGCTGCTCGGAGCACGTGCTGACGACGTCGGCGTCGTCCGGCGGCGTCGTCGAGCGGCCGGAGGTGCAGAGCCAGCCCAAGATCGCCGAGTGGGAGCGCACGTTCGCCGGCGCCGCCGCCCCGGCTGGCGCCGTCAGCACGGCCGGACCGATTCTGGGCCAGCTCGACCCCGCCGCCGCCGTCGCCGGCGGCGGCGACCCGCTCCTCCAGGACATCCTCATGTACTGGGGCAAGCCGTTCTGACGGCTCGGCTCGGCTCGGCGGCTTGAGCCGGGAGGGATGAATGATCTGATATTCTATCGGGGTGGCTCGGGCGAGCCGCTGGAATCGATCGGTGGCCGTTGGATGGCGGCCGAGTTATTGGTAGCCGTCAGATGGGAGATGGAATGGCATTAGTTAGTTACTAGTATCCGTATGGACGGCGGCGATGAAACAGGGGAGCCCCGAGATGCGTGTAGGAAGGAGATGCATGGTACTGTACTCGAGAATTATAAGCCGTGTGTATATGCGAAATTGGTTGGCTAGATCGATCTGGGCGTATTTCTCTCTCGAGGCTCTTGCTATGTTTTTCATCTTTTTTAAAGAAGACTGGACACTTTGTCGCATGCAACAAAGCATGCTGCATTTTTACAAGGTGTCGGCAATCATATAATTATGCACTTGTATCAGCATTCAACATTTAAGCAAAGTGATTTTTTTAAGAAAA
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| CDS seq | ATGAGCGGCGGCGGCGAAGGGGCGGCGGCGGCGGAGAGGCAGGAGCTGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGATGCACTACCTCTGCCGGCGGTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGGTCGACCTCTACAAGTTCGATCCATGGCATCTCCCAAGAATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCTCGGGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCCGGGTACTGGAAGGCCACCGGCGCCGACAAGCCGGTGGGCACGCCGAGGCCGGTGGCCATCAAGAAGGCGCTCGTCTTCTACGCCGGCAAGGCGCCCAAGGGCGACAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACACCCTCCGGCTAGATGATTGGGTCCTGTGCCGAATCTACAACAAGAAAGGCGGCGTGGAGAAGCCGAGCGGCGGCGGCGGCGGCGAACGTTCGAATATGATGAGCCACGGGGAGACCGCGTCGGCGGGCTCGCCGCCGGAGCAGAAGCCGGCCGTGCTGCCGCCGCCGCCACCGCCGTACGCGGCGGCGGCGCCGTTCTCGGAGCTGGCGGCGTTCTACGACGTGCGGCCGTCGGACTCGGTGCCGCGGGCGCACGGCGCGGACTCGAGCTGCTCGGAGCACGTGCTGACGACGTCGGCGTCGTCCGGCGGCGTCGTCGAGCGGCCGGAGGTGCAGAGCCAGCCCAAGATCGCCGAGTGGGAGCGCACGTTCGCCGGCGCCGCCGCCCCGGCTGGCGCCGTCAGCACGGCCGGACCGATTCTGGGCCAGCTCGACCCCGCCGCCGCCGTCGCCGGCGGCGGCGACCCGCTCCTCCAGGACATCCTCATGTACTGGGGCAAGCCGTTCTGA
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| Protein seq | MSGGGEGAAAAERQELQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEVDLYKFDPWHLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGTPRPVAIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGGVEKPSGGGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPPYAAAAPFSELAAFYDVRPSDSVPRAHGADSSCSEHVLTTSASSGGVVERPEVQSQPKIAEWERTFAGAAAPAGAVSTAGPILGQLDPAAAVAGGGDPLLQDILMYWGKPF |
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| Function | NAC domain-containing protein 48 [UniProtKB/Swiss-Prot:Q7F2L3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g34830 | LOC_Os05g34830.1 | Chr05 | 20678001 | 20680343 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGCGGCGGCGGCGAAGGGGCGGCGGCGGCGGAGAGGCAGGAGCTGCAGCTGCCGCCGGGGTTCAGGTTCCACCCGACGGACGAGGAGCTGGTGATGCACTACCTCTGCCGGCGGTGCGCCGGCCTCCCCATCGCCGTCCCCATCATCGCCGAGGTCGACCTCTACAAGTTCGATCCATGGCATCTCCCAAGAATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCTCGGGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCCGGGTACTGGAAGGCCACCGGCGCCGACAAGCCGGTGGGCACGCCGAGGCCGGTGGCCATCAAGAAGGCGCTCGTCTTCTACGCCGGCAAGGCGCCCAAGGGCGACAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACACCCTCCGGCTAGATGATTGGGTCCTGTGCCGAATCTACAACAAGAAAGGCGGCGTGGAGAAGCCGAGCGGCGGCGGCGGCGGCGAACGTTCGAATATGATGAGCCACGGGGAGACCGCGTCGGCGGGCTCGCCGCCGGAGCAGAAGCCGGCCGTGCTGCCGCCGCCGCCACCGCCGTACGCGGCGGCGGCGCCGTTCTCGGAGCTGGCGGCGTTCTACGACGTGCGGCCGTCGGACTCGGTGCCGCGGGCGCACGGCGCGGACTCGAGCTGCTCGGAGCACGTGCTGACGACGTCGGCGTCGTCCGGCGGCGTCGTCGAGCGGCCGGAGGTGCAGAGCCAGCCCAAGATCGCCGAGTGGGAGCGCACGTTCGCCGGCGCCGCCGCCCCGGCTGGCGCCGTCAGCACGGCCGGACCGATTCTGGGCCAGCTCGACCCCGCCGCCGCCGTCGCCGGCGGCGGCGACCCGCTCCTCCAGGACATCCTCATGTACTGGGGCAAGCCGTTCTGA
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| Protein seq | MSGGGEGAAAAERQELQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEVDLYKFDPWHLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGTPRPVAIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGGVEKPSGGGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPPYAAAAPFSELAAFYDVRPSDSVPRAHGADSSCSEHVLTTSASSGGVVERPEVQSQPKIAEWERTFAGAAAPAGAVSTAGPILGQLDPAAAVAGGGDPLLQDILMYWGKPF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g34830 | LOC_Os05g34830.2 | Chr05 | 20678010 | 20680343 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCTCGGGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCCGGGTACTGGAAGGCCACCGGCGCCGACAAGCCGGTGGGCACGCCGAGGCCGGTGGCCATCAAGAAGGCGCTCGTCTTCTACGCCGGCAAGGCGCCCAAGGGCGACAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACACCCTCCGGCTAGATGATTGGGTCCTGTGCCGAATCTACAACAAGAAAGGCGGCGTGGAGAAGCCGAGCGGCGGCGGCGGCGGCGAACGTTCGAATATGATGAGCCACGGGGAGACCGCGTCGGCGGGCTCGCCGCCGGAGCAGAAGCCGGCCGTGCTGCCGCCGCCGCCACCGCCGTACGCGGCGGCGGCGCCGTTCTCGGAGCTGGCGGCGTTCTACGACGTGCGGCCGTCGGACTCGGTGCCGCGGGCGCACGGCGCGGACTCGAGCTGCTCGGAGCACGTGCTGACGACGTCGGCGTCGTCCGGCGGCGTCGTCGAGCGGCCGGAGGTGCAGAGCCAGCCCAAGATCGCCGAGTGGGAGCGCACGTTCGCCGGCGCCGCCGCCCCGGCTGGCGCCGTCAGCACGGCCGGACCGATTCTGGGCCAGCTCGACCCCGCCGCCGCCGTCGCCGGCGGCGGCGACCCGCTCCTCCAGGACATCCTCATGTACTGGGGCAAGCCGTTCTGA
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| Protein seq | MALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGTPRPVAIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGGVEKPSGGGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPPYAAAAPFSELAAFYDVRPSDSVPRAHGADSSCSEHVLTTSASSGGVVERPEVQSQPKIAEWERTFAGAAAPAGAVSTAGPILGQLDPAAAVAGGGDPLLQDILMYWGKPF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g34830 | LOC_Os05g34830.3 | Chr05 | 20678010 | 20680343 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCTGTACGGCGAGAAGGAGTGGTACTTCTTCTCCCCTCGGGACCGCAAGTACCCGAACGGGTCGCGGCCGAACCGCGCCGCCGGGTCCGGGTACTGGAAGGCCACCGGCGCCGACAAGCCGGTGGGCACGCCGAGGCCGGTGGCCATCAAGAAGGCGCTCGTCTTCTACGCCGGCAAGGCGCCCAAGGGCGACAAGACCAACTGGATCATGCACGAGTACCGCCTCGCCGACGTCGACCGCTCCGCCCGCAAGAAGAACACCCTCCGGCTAGATGATTGGGTCCTGTGCCGAATCTACAACAAGAAAGGCGGCGTGGAGAAGCCGAGCGGCGGCGGCGGCGGCGAACGTTCGAATATGATGAGCCACGGGGAGACCGCGTCGGCGGGCTCGCCGCCGGAGCAGAAGCCGGCCGTGCTGCCGCCGCCGCCACCGCCGTACGCGGCGGCGGCGCCGTTCTCGGAGCTGGCGGCGTTCTACGACGTGCGGCCGTCGGACTCGGTGCCGCGGGCGCACGGCGCGGACTCGAGCTGCTCGGAGCACGTGCTGACGACGTCGGCGTCGTCCGGCGGCGTCGTCGAGCGGCCGGAGGTGCAGAGCCAGCCCAAGATCGCCGAGTGGGAGCGCACGTTCGCCGGCGCCGCCGCCCCGGCTGGCGCCGTCAGCACGGCCGGACCGATTCTGGGCCAGCTCGACCCCGCCGCCGCCGTCGCCGGCGGCGGCGACCCGCTCCTCCAGGACATCCTCATGTACTGGGGCAAGCCGTTCTGA
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| Protein seq | MALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGTPRPVAIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSARKKNTLRLDDWVLCRIYNKKGGVEKPSGGGGGERSNMMSHGETASAGSPPEQKPAVLPPPPPPYAAAAPFSELAAFYDVRPSDSVPRAHGADSSCSEHVLTTSASSGGVVERPEVQSQPKIAEWERTFAGAAAPAGAVSTAGPILGQLDPAAAVAGGGDPLLQDILMYWGKPF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.680375 | 1.989889 | 1.417925 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0421600 | RBH | 2.567943 | 2.974685 | 4.289868 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66120 | RBH | 13.554550 | 14.955303 | 2.048693 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0421600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017600 | RBH | 0.965648 | 0.0 | 2.502761 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017600 | RBH | 0.0 | 0.000000 | 2.251394 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017430 | RBH | 1.516300 | 6.188653 | 3.756696 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017440 | RBH | 0.404301 | 0.054938 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017650 | RBH | 5.770335 | 4.585781 | 1.366494 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0316400 | RBH | 3.967063 | 7.169496 | 55.946882 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0017140 | RBH | 0.329362 | 0.159759 | 0.895809 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0326500 | RBH | 11.119925 | 51.0437125 | 2.2214565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017490 | RBH | 0.054900 | 0.243168 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0017380 | RBH | 0.379416 | 5.210990 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017520 | RBH | 0.0 | 6.769584 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017530 | RBH | 0.460396 | 0.925033 | 1.077758 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017580 | RBH | 0.165001 | 6.073799 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017070 | RBH | 0.567249 | 0.588633 | 1.373462 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0017380 | RBH | 2.121232 | 1.816663 | 9.823773 |
