Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0016500 | OGI:05053330 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:20707875-20708668 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagggaaaatcctaccgaggcaattgtatttgttttggtagatatgctcttcaagcacttgaacccacttggattacggcgaggcagatagaagcaggacgaagagcaatgacacgatatgcacgtcgtgttggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgacggaaacacgtatgggttcgggaaagggatcccccgaatattgggtagccgttgttaaaccaggtcgaatactttatgaaatgggcagagtatccgaaactatagctagagcagctatttccatagctgccagcaaaatgcccatacgaagtcaatttcttcggttagaaatataaccccccaaaaaaagtagtattgaaaataaaaaaaccaggttcttctttctagaaagacaatatttctttcatccttttgcattgaaataacaaattgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataacagtggagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcaatatgctcgtattggtgatgttattgttgctgtaatcaaagacgcagtgccccaaatgcctctagaaagatctcaagtaattcgagctgtaattgtacgtacatgtaaagagttcaaatgcgaagacggtataataatacgctatgacgacaatgcagcggttatcattgatcaaaaagaaatccaaaaggaactcgcgtttttggtgcgatcgtcgaggaattga
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| CDS seq | atgaagggaaaatcctaccgaggcaattgtatttgttttggtagatatgctcttcaagcacttgaacccacttggattacggcgaggcagatagaagcaggacgaagagcaatgacacgatatgcacgtcgtgttggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgacggaaacacgtatgggttcgggaaagggatcccccgaatattgggtagccgttgttaaaccaggtcgaatactttatgaaatgggcagagtatccgaaactatagctagagcagctatttccatagctgccagcaaaatgcccatacgaaataacagtggagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcaatatgctcgtattggtgatgttattgttgctgtaatcaaagacgcagtgccccaaatgcctctagaaagatctcaagtaattcgagctgtaattgtacgtacatgtaaagagttcaaatgcgaagacggtataataatacgctatgacgacaatgcagcggttatcattgatcaaaaagaaatccaaaaggaactcgcgtttttggtgcgatcgtcgaggaattga
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRVGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGRVSETIARAAISIAASKMPIRNNSGARKLMCIRVIGAASNQQYARIGDVIVAVIKDAVPQMPLERSQVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKEIQKELAFLVRSSRN |
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| Function | 50S ribosomal protein L16, chloroplastic [UniProtKB/Swiss-Prot:P0C443] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0016500 | OsLima_05g0016500.01 | Chr05 | 20707875 | 20708668 | + | NAM | ||
| CDS seq | atgaagggaaaatcctaccgaggcaattgtatttgttttggtagatatgctcttcaagcacttgaacccacttggattacggcgaggcagatagaagcaggacgaagagcaatgacacgatatgcacgtcgtgttggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgacggaaacacgtatgggttcgggaaagggatcccccgaatattgggtagccgttgttaaaccaggtcgaatactttatgaaatgggcagagtatccgaaactatagctagagcagctatttccatagctgccagcaaaatgcccatacgaaataacagtggagctcgaaaattgatgtgtattcgagtcataggagctgctagtaatcagcaatatgctcgtattggtgatgttattgttgctgtaatcaaagacgcagtgccccaaatgcctctagaaagatctcaagtaattcgagctgtaattgtacgtacatgtaaagagttcaaatgcgaagacggtataataatacgctatgacgacaatgcagcggttatcattgatcaaaaagaaatccaaaaggaactcgcgtttttggtgcgatcgtcgaggaattga
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRVGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYEMGRVSETIARAAISIAASKMPIRNNSGARKLMCIRVIGAASNQQYARIGDVIVAVIKDAVPQMPLERSQVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKEIQKELAFLVRSSRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.579158 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g22724 | SBH | 59.319458 | 51.654667 | 25.783430 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0016670 | SBH | 1.892924 | 0.000000 | 7.138669 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035890 | SBH | 13.145954 | 26.207108 | 47.520508 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036260 | SBH | 11.192279 | 18.540056 | 58.990185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035650 | SBH | 13.238655 | 1.021801 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0016680 | RBH | 12.896438 | 8.970515 | 55.438168 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0454400 | SBH | 91.2320745 | 40.4014455 | 20.6135725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0003730 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0312500 | RBH | 21.08312 | 6.337933 | 4.341444 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004620 | SBH | 26.624899 | 2.423838 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007440 | SBH | 27.437029 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0016540 | RBH | 86.392487 | 245.961105 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019910 | SBH | 18.263489 | 0.0 | 17.029457 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0016610 | RBH | 1.218977 | 2.554582 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026050 | SBH | 51.216404 | 33.987991 | 104.823463 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025810 | SBH | 54.282810 | 284.303741 | 253.209412 |
