Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_05g0003730 | OGI:05053330 | 6/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr05:3085263-3085646 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTGTATTCGAGTCATAGGAGCTGCTAGTAATCAGCGATATGCTCGTATTGGTGATGTTATTGTTGCTGTAATTAAAGACGCAGTGCCCCAAATGCCTCTAGAAAGATCCGAAGTAATTCGAGCTGTAATTGTACGTACATGTAAAGAGTTCAAATGCGAAGACGGTATAATAATACGCTATGACGACAATGCAGCGGTTTGAGACAGTACACCCAAGCATCTGCTTCAGATGCCCTTAACATCTCATCTACTCTGGCAATAGTTGCTTCTTGTACCACTGCTTGCTCTCTAGCTTTCCCTAGCTCAGTGCGCCACATATGAGCCTCCTGAAGTGCAGCATCTCTTTCCTTCAGCAATTGATCCTTCTCTTTGCTCAATCTAA |
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| CDS seq | ATGTGTATTCGAGTCATAGGAGCTGCTAGTAATCAGCGATATGCTCGTATTGGTGATGTTATTGTTGCTGTAATTAAAGACGCAGTGCCCCAAATGCCTCTAGAAAGATCCGAAGTAATTCGAGCTGTAATTGTACGTACATGTAAAGAGTTCAAATGCGAAGACGGTATAATAATACGCTATGACGACAATGCAGCGCTTTCCCTAGCTCAGTGCGCCACATATGAGCCTCCTGAAGTGCAGCATCTCTTTCCTTCAGCAATTGATCCTTCTCTTTGCTCAATCTAA |
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| Protein seq | MCIRVIGAASNQRYARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAALSLAQCATYEPPEVQHLFPSAIDPSLCSI |
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| Function | 50S ribosomal protein L14, chloroplastic [UniProtKB/Swiss-Prot:P0C440] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_05g0003730 | OsIR64_05g0003730.01 | Chr05 | 3085263 | 3085646 | + | NAM | ||
| CDS seq | ATGTGTATTCGAGTCATAGGAGCTGCTAGTAATCAGCGATATGCTCGTATTGGTGATGTTATTGTTGCTGTAATTAAAGACGCAGTGCCCCAAATGCCTCTAGAAAGATCCGAAGTAATTCGAGCTGTAATTGTACGTACATGTAAAGAGTTCAAATGCGAAGACGGTATAATAATACGCTATGACGACAATGCAGCGCTTTCCCTAGCTCAGTGCGCCACATATGAGCCTCCTGAAGTGCAGCATCTCTTTCCTTCAGCAATTGATCCTTCTCTTTGCTCAATCTAA
More
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| Protein seq | MCIRVIGAASNQRYARIGDVIVAVIKDAVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAALSLAQCATYEPPEVQHLFPSAIDPSLCSI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0016670 | SBH | 1.892924 | 0.000000 | 7.138669 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0016680 | RBH | 12.896438 | 8.970515 | 55.438168 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0045600 | SBH | 1.687739 | 0.8236145 | 0.285413 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0016500 | RBH | 0.579158 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0016540 | RBH | 86.392487 | 245.961105 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0016610 | RBH | 1.218977 | 2.554582 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
