Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0015170 | OGI:05050030 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:19523111-19524639 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggcgttcagcaccacaaggcaccacacgaaacatgccatcgtcaccaccgcgaccgcgaccccccgtggctttggctgcgcggtagccgatgacgtcggattggacggcagatcggatgactgggacggcggcggatcggacgtctggaacccgagcctcgacttgtggaggtcgtagatcatgtacgtgcccgtctggatcatgctgccgatgagcgacaacccatcgctgtcgtccggcgacggcagtatcgtcaggcactccagcccggtatcctcgtcctggtagaggtagttccactgctgcagcttcatcaccgcgtttcccccgaagacgaacgccatgtcggggatcttcgccctgtccatgtgctggcttctgtagcacaggtcaagcccaagcgcggagccatcctccgtgttgttggaacccagcgcgctcaccagctccttcttcaggaggtcgtaggcgttcttctcgaggtaagtcactggcacggaggtgctcaggaccgcctccagggatccccccgccgagccgccgccgccgcccccgagctgcaggtccttgccgccaacgcgtatgccggtgagctcgacgaagtacaggtcgaggttcgcgctactgactgcgccggtggtgaagaacggcgtgtagcGgggGACGACTGCCGCCGCTGGTCCCTGGCACGGTGATGCCGTCGTCGTCGCCGAAGACGATGAAGTCGTCTGCTGCGTTGTTGTCCGTGGTGTTCACCTCGGGTGCGAAGTAGTAGGAGAACCGCCCGAGGTTGAGCTGCGAGACGAGGGAGAGACTCCCCTTGTTGAGGCCGAGCACGCCGGACGCGCCGAAGTCCCCCTCCGTTGAGGAGCTGCACCCGAAGGTGACGACGCCCTTTACGGCGGTGTCTTCGCTGTCGTCGCCGAACGTGAAGTTTTGGACGGCGAGGTTGCCGGTCGTCTCCCTTCCGTCGTCACCACCGTACCCGTACGTGTAGGTGTACTCGCACAGATCGCCCGTCGTGTTGCAGGTCGGCTTGACGATACGCTGGCAGGTATCGCTCTCGCATTTGTACAGCTCCTCGGggccgcgcgtcgtagaccgtcacgccgggcatgttgttgttcgtgccgcaggaggagttgccggtggcgcagcacggcacccacacgaactcactggtgacgtcgagcgcgccggagaagtcctgctgcgagccgacggcgaaggcgacgctgtaggtcacggcggtggtggccggggcgtggcgggcacgcctcggcgtcggcgggctcggggcattgctgctgccgtgatctgcgccgtcgccgccctggctgctgctggggctgccggtggggaggaggccgaccacgtctttcgcgtggttcttgaagaagtcccgcaacgcttttcctgtctttgggcttaccaagaaccgtgggatctttccggcggaggccattcccggcatgacgacgaggacgaggaaggcgatggcgacggcgggggctcggccggccat
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| CDS seq | atggccggccgagcccccgccgtcgccatcgccttcctcgtcctcgtcgtcatgccgggaatggcctccgccggaaagatcccacggttcttggtaagcccaaagacaggaaaagcgttgcgggacttcttcaagaaccacgcgaaagacgtggtcggcctcctccccaccggcagccccagcagcagccagggcggcgacggcgcagatcacggcagcagcaatgccccgagcccgccgacgccgaggcgtgcccgccacgccccggccaccaccgccgtgacctacagcgtcgccttcgccgtcggctcgcagcaggacttctccggcgcgctcgacgtcaccagtgagttcgtgtgggtgccgtgctgcgccaccggcaactcctcctgcggcacgaacaacaacatgcccggcgtgacggtctacgacgcgcggccCCGAGGAGCTCGTATCGTCAAGCCGACCTGCAACACGACGGGCGATCTGTGCGAGTACACCTACACGTACGGGTACGGTGGTGACGACGGAAGGGAGACGACCGGCAACCTCGCCGTCCAAAACTTCACGTTCGGCGACGACAGCGAAGACACCGCCGTAAAGGGCGTCGTCACCTTCGGGTGCAGCTCCTCAACGGAGGGGGACTTCGGCGCGTCCGGCGTGCTCGGCCTCAACAAGGGGAGTCTCTCCCTCGTCTCGCAGCTCAACCTCGGGCGGTTCTCCTACTACTTCGCACCCGAGGTGAACACCACGGACAACAACGCAGCAGACGACTTCATCGTCTTCGGCGACGACGACGGCATCACCGGACCAGCGGCGGCAGTCGTCcccCgctacacgccgttcttcaccaccggcgcagtcagtagcgcgaacctcgacctgtacttcgtcgagctcaccggcatacgcgttggcggcaaggacctgcagctcgggggcggcggcggcggctcggcggggggatccctggaggcggtcctgagcacctccgtgccagtgacttacctcgagaagaacgcctacgacctcctgaagaaggagctggtgagcgcgctgggttccaacaacacggaggatggctccgcgcttgggcttgacctgtgctacagaagccagcacatggacagggcgaagatccccgacatggcgttcgtcttcgggggaaacgcggtgatgaagctgcagcagtggaactacctctaccaggacgaggataccgggctggagtgcctgacgatactgccgtcgccggacgacagcgatgggttgtcgctcatcggcagcatgatccagacgggcacgtacatgatctacgacctccacaagtcgaggctcgggttccagacgtccgatccgccgccgtcccagtcatccgatctgccgtccaatccgacgtcatcggctaccgcgcagccaaagccacggggggtcgcggtcgcggtggtgacgatggcatgtttcgtgtggtgccttgtggtgctgaacgcctga
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| Protein seq | MAGRAPAVAIAFLVLVVMPGMASAGKIPRFLVSPKTGKALRDFFKNHAKDVVGLLPTGSPSSSQGGDGADHGSSNAPSPPTPRRARHAPATTAVTYSVAFAVGSQQDFSGALDVTSEFVWVPCCATGNSSCGTNNNMPGVTVYDARPRGARIVKPTCNTTGDLCEYTYTYGYGGDDGRETTGNLAVQNFTFGDDSEDTAVKGVVTFGCSSSTEGDFGASGVLGLNKGSLSLVSQLNLGRFSYYFAPEVNTTDNNAADDFIVFGDDDGITGPAAAVVPRYTPFFTTGAVSSANLDLYFVELTGIRVGGKDLQLGGGGGGSAGGSLEAVLSTSVPVTYLEKNAYDLLKKELVSALGSNNTEDGSALGLDLCYRSQHMDRAKIPDMAFVFGGNAVMKLQQWNYLYQDEDTGLECLTILPSPDDSDGLSLIGSMIQTGTYMIYDLHKSRLGFQTSDPPPSQSSDLPSNPTSSATAQPKPRGVAVAVVTMACFVWCLVVLNA |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0015170 | OsLima_05g0015170.01 | Chr05 | 19523111 | 19524639 | - | NAM | ||
| CDS seq | atggccggccgagcccccgccgtcgccatcgccttcctcgtcctcgtcgtcatgccgggaatggcctccgccggaaagatcccacggttcttggtaagcccaaagacaggaaaagcgttgcgggacttcttcaagaaccacgcgaaagacgtggtcggcctcctccccaccggcagccccagcagcagccagggcggcgacggcgcagatcacggcagcagcaatgccccgagcccgccgacgccgaggcgtgcccgccacgccccggccaccaccgccgtgacctacagcgtcgccttcgccgtcggctcgcagcaggacttctccggcgcgctcgacgtcaccagtgagttcgtgtgggtgccgtgctgcgccaccggcaactcctcctgcggcacgaacaacaacatgcccggcgtgacggtctacgacgcgcggccCCGAGGAGCTCGTATCGTCAAGCCGACCTGCAACACGACGGGCGATCTGTGCGAGTACACCTACACGTACGGGTACGGTGGTGACGACGGAAGGGAGACGACCGGCAACCTCGCCGTCCAAAACTTCACGTTCGGCGACGACAGCGAAGACACCGCCGTAAAGGGCGTCGTCACCTTCGGGTGCAGCTCCTCAACGGAGGGGGACTTCGGCGCGTCCGGCGTGCTCGGCCTCAACAAGGGGAGTCTCTCCCTCGTCTCGCAGCTCAACCTCGGGCGGTTCTCCTACTACTTCGCACCCGAGGTGAACACCACGGACAACAACGCAGCAGACGACTTCATCGTCTTCGGCGACGACGACGGCATCACCGGACCAGCGGCGGCAGTCGTCcccCgctacacgccgttcttcaccaccggcgcagtcagtagcgcgaacctcgacctgtacttcgtcgagctcaccggcatacgcgttggcggcaaggacctgcagctcgggggcggcggcggcggctcggcggggggatccctggaggcggtcctgagcacctccgtgccagtgacttacctcgagaagaacgcctacgacctcctgaagaaggagctggtgagcgcgctgggttccaacaacacggaggatggctccgcgcttgggcttgacctgtgctacagaagccagcacatggacagggcgaagatccccgacatggcgttcgtcttcgggggaaacgcggtgatgaagctgcagcagtggaactacctctaccaggacgaggataccgggctggagtgcctgacgatactgccgtcgccggacgacagcgatgggttgtcgctcatcggcagcatgatccagacgggcacgtacatgatctacgacctccacaagtcgaggctcgggttccagacgtccgatccgccgccgtcccagtcatccgatctgccgtccaatccgacgtcatcggctaccgcgcagccaaagccacggggggtcgcggtcgcggtggtgacgatggcatgtttcgtgtggtgccttgtggtgctgaacgcctga
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| Protein seq | MAGRAPAVAIAFLVLVVMPGMASAGKIPRFLVSPKTGKALRDFFKNHAKDVVGLLPTGSPSSSQGGDGADHGSSNAPSPPTPRRARHAPATTAVTYSVAFAVGSQQDFSGALDVTSEFVWVPCCATGNSSCGTNNNMPGVTVYDARPRGARIVKPTCNTTGDLCEYTYTYGYGGDDGRETTGNLAVQNFTFGDDSEDTAVKGVVTFGCSSSTEGDFGASGVLGLNKGSLSLVSQLNLGRFSYYFAPEVNTTDNNAADDFIVFGDDDGITGPAAAVVPRYTPFFTTGAVSSANLDLYFVELTGIRVGGKDLQLGGGGGGSAGGSLEAVLSTSVPVTYLEKNAYDLLKKELVSALGSNNTEDGSALGLDLCYRSQHMDRAKIPDMAFVFGGNAVMKLQQWNYLYQDEDTGLECLTILPSPDDSDGLSLIGSMIQTGTYMIYDLHKSRLGFQTSDPPPSQSSDLPSNPTSSATAQPKPRGVAVAVVTMACFVWCLVVLNA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0384300 | SBH | 0.0 | 0.0 | 0.371407 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g31830 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0384300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0015340 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0015340 | RBH | 0.0 | 0.745256 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0015180 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0015210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0015380 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0283200 | RBH | 0 | 0.093566 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0014950 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0294500 | RBH | 0 | 0.0272825 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0015190 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0015210 | RBH | 0.0 | 7.037835 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0015280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0015320 | RBH | 0.0 | 0.454051 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G014870 | RBH | 0.0 | 0.0 | 0.468131 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0015130 | RBH | 0.0 | 0.0 | 0.0 |
