Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0046400 | OGI:01123300 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:43786029-43787626 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acaagccacatacagtatcacatatgctacataattgatttaacccacacgaaatcacctattacaatccttatttactaactcagcgtttaaaaataacatactagatgaactgtggcatgagctcatgaatggtaagccaaaagtcgaacgcctgacggccaagctagtacgtacgtacaatacaattacgcaattcgcacagtgatcgatcaggccgtgcaaagctcacgggagaagccgacgcggccgttggcgacgtcgaacagcacgcgttggttctgctgctgcatgctggccagcacattgagcgccgcgttcacgccgtccgagggccccgcggccatcgccaggcacgcgacgccgcccgacgagctgtggatcatcacgttctcctccggcagcgtcacggcgaccgccccggcgaacatgaacgtgacggtaggcaccgagacggtcacgttgtagcacgtgtcgaacccgcccagcggcggcgccaccggcgtgcgcaccctgccccggaacgcgtcgcgcacggcggcgtacaccggggcggcaagccgcgtgaacattgtcccggcgtcgatgatggtgccgctgcccgtgaccgggttgaacgcgagcgcggattgcgggacttgcacgaccttgctgccgacgcggatcccgatcatgttgacgtagtagagtgaagggcgatgagggttgtagagcaacggcgtcgtcttgatcctcttgggttgcccgatggggccgagctttagtgtgccggagaagttagacgacctgtagttcgggaggcagtaggagaacacggagccgtacgtgtccttggtctgcgacaagaaggagagcggcccgcggccgaagccgatgagcccctgcggcggcacggagttgccgctgacgacacggaggcacccgaaggtgtacgacacgacgacgttgttctcgagggccagcgagtcctgcccgagcacggcctggaacgtggacgccgcgtaggtgaggttgaacccgcaggaggagccgacgcccgcggggcaggacgggctgggcacctgcgcgcactgcggcgagccgcagggcacggtgcggtacgtggacgactgcgtcggggagaaggacggcgacgaggcggcgcagcccgcgcaggcgctgcatggcacccacgccgcgtcgttgctggggtcgatggccacgaggagcgtctgcgccggcgtgccgaggcccgcgcgggcgatgtagttcgggatgctgaggatctgacgccccggcgcgatcggcacgggtgggtttgccctgttcttgggtttgggcttggctctggtcgtcagaggccccgcccccgacgtgagcatgctgacgatgcgcgccgtgtccgccgccgactgggcggctacggacgcggcccacgcgctgagcggcgccccggcattgggcgtcaccgagtgagaacgtgccagctgcagcgttgagctgctcactgccgttgtaggagtcaagaatatggacaagaaggctaggagtggtaatgctaggagtgacatgattgctttgcttctggtgtgagaaattgagggcgtgtcaagctagtg
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| CDS seq | atgtcactcctagcattaccactcctagccttcttgtccatattcttgactcctacaacggcagtgagcagctcaacgctgcagctggcacgttctcactcggtgacgcccaatgccggggcgccgctcagcgcgtgggccgcgtccgtagccgcccagtcggcggcggacacggcgcgcatcgtcagcatgctcacgtcgggggcggggcctctgacgaccagagccaagcccaaacccaagaacagggcaaacccacccgtgccgatcgcgccggggcgtcagatcctcagcatcccgaactacatcgcccgcgcgggcctcggcacgccggcgcagacgctcctcgtggccatcgaccccagcaacgacgcggcgtgggtgccatgcagcgcctgcgcgggctgcgccgcctcgtcgccgtccttctccccgacgcagtcgtccacgtaccgcaccgtgccctgcggctcgccgcagtgcgcgcaggtgcccagcccgtcctgccccgcgggcgtcggctcctcctgcgggttcaacctcacctacgcggcgtccacgttccaggccgtgctcgggcaggactcgctggccctcgagaacaacgtcgtcgtgtcgtacaccttcgggtgcctccgtgtcgtcagcggcaactccgtgccgccgcaggggctcatcggcttcggccgcgggccgctctccttcttgtcgcagaccaaggacacgtacggctccgtgttctcctactgcctcccgaactacaggtcgtctaacttctccggcacactaaagctcggccccatcgggcaacccaagaggatcaagacgacgccgttgctctacaaccctcatcgcccttcactctactacgtcaacatgatcgggatccgcgtcggcagcaaggtcgtgcaagtcccgcaatccgcgctcgcgttcaacccggtcacgggcagcggcaccatcatcgacgccgggacaatgttcacgcggcttgccgccccggtgtacgccgccgtgcgcgacgcgttccggggcagggtgcgcacgccggtggcgccgccgctgggcgggttcgacacgtgctacaacgtgaccgtctcggtgcctaccgtcacgttcatgttcgccggggcggtcgccgtgacgctgccggaggagaacgtgatgatccacagctcgtcgggcggcgtcgcgtgcctggcgatggccgcggggccctcggacggcgtgaacgcggcgctcaatgtgctggccagcatgcagcagcagaaccaacgcgtgctgttcgacgtcgccaacggccgcgtcggcttctcccgtgagctttgcacggcctga
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| Protein seq | MSLLALPLLAFLSIFLTPTTAVSSSTLQLARSHSVTPNAGAPLSAWAASVAAQSAADTARIVSMLTSGAGPLTTRAKPKPKNRANPPVPIAPGRQILSIPNYIARAGLGTPAQTLLVAIDPSNDAAWVPCSACAGCAASSPSFSPTQSSTYRTVPCGSPQCAQVPSPSCPAGVGSSCGFNLTYAASTFQAVLGQDSLALENNVVVSYTFGCLRVVSGNSVPPQGLIGFGRGPLSFLSQTKDTYGSVFSYCLPNYRSSNFSGTLKLGPIGQPKRIKTTPLLYNPHRPSLYYVNMIGIRVGSKVVQVPQSALAFNPVTGSGTIIDAGTMFTRLAAPVYAAVRDAFRGRVRTPVAPPLGGFDTCYNVTVSVPTVTFMFAGAVAVTLPEENVMIHSSSGGVACLAMAAGPSDGVNAALNVLASMQQQNQRVLFDVANGRVGFSRELCTA |
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| Function | Aspartyl protease AED3 [UniProtKB/Swiss-Prot:O04496] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0046400 | OsLima_01g0046400.01 | Chr01 | 43786029 | 43787626 | - | NAM | ||
| CDS seq | atgtcactcctagcattaccactcctagccttcttgtccatattcttgactcctacaacggcagtgagcagctcaacgctgcagctggcacgttctcactcggtgacgcccaatgccggggcgccgctcagcgcgtgggccgcgtccgtagccgcccagtcggcggcggacacggcgcgcatcgtcagcatgctcacgtcgggggcggggcctctgacgaccagagccaagcccaaacccaagaacagggcaaacccacccgtgccgatcgcgccggggcgtcagatcctcagcatcccgaactacatcgcccgcgcgggcctcggcacgccggcgcagacgctcctcgtggccatcgaccccagcaacgacgcggcgtgggtgccatgcagcgcctgcgcgggctgcgccgcctcgtcgccgtccttctccccgacgcagtcgtccacgtaccgcaccgtgccctgcggctcgccgcagtgcgcgcaggtgcccagcccgtcctgccccgcgggcgtcggctcctcctgcgggttcaacctcacctacgcggcgtccacgttccaggccgtgctcgggcaggactcgctggccctcgagaacaacgtcgtcgtgtcgtacaccttcgggtgcctccgtgtcgtcagcggcaactccgtgccgccgcaggggctcatcggcttcggccgcgggccgctctccttcttgtcgcagaccaaggacacgtacggctccgtgttctcctactgcctcccgaactacaggtcgtctaacttctccggcacactaaagctcggccccatcgggcaacccaagaggatcaagacgacgccgttgctctacaaccctcatcgcccttcactctactacgtcaacatgatcgggatccgcgtcggcagcaaggtcgtgcaagtcccgcaatccgcgctcgcgttcaacccggtcacgggcagcggcaccatcatcgacgccgggacaatgttcacgcggcttgccgccccggtgtacgccgccgtgcgcgacgcgttccggggcagggtgcgcacgccggtggcgccgccgctgggcgggttcgacacgtgctacaacgtgaccgtctcggtgcctaccgtcacgttcatgttcgccggggcggtcgccgtgacgctgccggaggagaacgtgatgatccacagctcgtcgggcggcgtcgcgtgcctggcgatggccgcggggccctcggacggcgtgaacgcggcgctcaatgtgctggccagcatgcagcagcagaaccaacgcgtgctgttcgacgtcgccaacggccgcgtcggcttctcccgtgagctttgcacggcctga
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| Protein seq | MSLLALPLLAFLSIFLTPTTAVSSSTLQLARSHSVTPNAGAPLSAWAASVAAQSAADTARIVSMLTSGAGPLTTRAKPKPKNRANPPVPIAPGRQILSIPNYIARAGLGTPAQTLLVAIDPSNDAAWVPCSACAGCAASSPSFSPTQSSTYRTVPCGSPQCAQVPSPSCPAGVGSSCGFNLTYAASTFQAVLGQDSLALENNVVVSYTFGCLRVVSGNSVPPQGLIGFGRGPLSFLSQTKDTYGSVFSYCLPNYRSSNFSGTLKLGPIGQPKRIKTTPLLYNPHRPSLYYVNMIGIRVGSKVVQVPQSALAFNPVTGSGTIIDAGTMFTRLAAPVYAAVRDAFRGRVRTPVAPPLGGFDTCYNVTVSVPTVTFMFAGAVAVTLPEENVMIHSSSGGVACLAMAAGPSDGVNAALNVLASMQQQNQRVLFDVANGRVGFSRELCTA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0954900 | RBH | 0.0 | 0.078685 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72510 | RBH | 0.0 | 0.051061 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0954900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0047410 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046940 | RBH | 0.0 | 0.0 | 0.484581 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0047370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046780 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0046290 | RBH | 0.327545 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0688900 | RBH | 1.415782 | 0.066062 | 0.5296555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045800 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0690700 | RBH | 0.92358 | 0.01983 | 1.183016 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0015170 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0046230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046560 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046550 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0046320 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046580 | RBH | 0.0 | 0.0 | 0.221319 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0046400 | RBH | 0.0 | 0.0 | 0.0 |
