Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLima_05g0014950		OGI:05049430 \| 16/16			LIMA \| Os127564RS1 \| Gramene(+IsoSeq)			Chr05:19375852-19380796		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		A1.1-4, -
DNA seq		atggctgagctactctccgctcttctacctgccctcatgaagaaagctggcgagtctctctccacagaattcagcttcatcgggggtatcgaacgccgtcgttcagagctatataccttgcttcttgccatcaaccaagtgatcgccgatgccgaggaacaggcatccaagaagcctgttgtgaagtcctggatcaccaagctcaagttagcggcatgtgatgctgatgatgcccttgatgagctacagtacgaggcactccgcagtgaggcacttcgtagtgggcataaaatcaatagccgagtaaggactttcttctctcctacttacaatcctttactgttaaagtataagattgggaagaggctccagcagatagtggatcgtatcaatgagcttgttctccaaattaaacagtttgggtttgatctaaatcagcccttgaaagtggatgagaggacgccgactcattcatgtgttgttgacgatgacataattggtagagacacagaaagagatgaaatcatccatacgcttctaagtgccaacagtaatgaattgttaatctttcctattgttgggataggaggattgggcaagacaacccttgcgcagtttgtcttcaataatgcaaaagtgaaagctcattttcaaaagcatatttgggtttgtgtgtcagaggagttcgatgtatctgacattgtgaagaagataattgacacctcaattgggaaggactgtgagctgaagaataataacctagagttactacagcagcgccttcgggaagaattgagccgaaagaggtatcttcttgtactcgatgatgtttggaatgaagatgaacaaaaatgggaagctctaagaacattgcttgtgtccagtggaatgggaagtgtggtgattgttacaacccgcagcttaaaagttgcatcgatcatgaaaactgataattcattgtgcctaaagcaccttaccccagaagattcctggactgtatttcgtagaagagcttttcgtgcaggtgcaggtgtggttgagactcctgaacttgttgaggttggtaaaaaaattgttcataagtgtcacggggttcctttagctataaagagtatgggggccttgatgagtacaaaacatgacacaagagactggctggccatccttgaaagtggtacttgggatgagaaaaatgagataatgcctgcactatggttgagctacaaacatttgccttcctatatgaaacagtgcttcgttttttgcgctgcttttcccaaggattgtcggattgttaaggacgacctgatacatctttggatatcaaatggctttattccatcaaatgagacctccgatgtagaactaatggggaaccatgttttctttgagcttgttttcagatcatttttccaagatattgaggaaacacggtcttctttcttatggaaagaatataagtatggttatagcgatgcaactacatgcaaaattcatgatcttatgcatgatcttgctgttcttatcagtggtgatgaatgttttgctttgcaaaatgtcactgaaatggagaaaataccagataatgtccatcatctggtttttccagagtcttacaagattgactttgtggtgcagcattgtcgaattacccgaagtttattttctttacaaaagaattacgcgtattctttcaaggaccttaaattcaaggagtccaatttcagagtgattggccttcatattagtggcattgaaagattttcaattgaaccagcatttatgaagcacttgaggtatcttgatttgtcctatagcgaaatagaaacattaactgaatcagtaaccgcactttataatttacaagtattaatgctcaatagctgtaggagtctgactatgcttccagagggcatgaaatttatggtcagtcttcgccatatatacctcgagtattgttatgctctgaagtgcatgccttccagtctagggcagctcagttctttgcgaacattgactacatatgttgttggtactgattctggatgtggaattcaggaactgaaagacttaaaacttgggggcaaactacatatacgtggtttggaggtaacaaatccattagatgcaaaagaagccaaccttgagtctaaacaaaatcttcacgaactggcagttcgttggtgctcaccgagtttcgcccgttcacctgttaattttgctgatgaagattcacaattatcttgtgctgaagaagtactgaatgctcttaaacctcctaacaaactaaaagttctaaacctaaaaggatatatgggctctagatttccaacgtggatggaagatggtgtgacactggccaacattgttaaactttctttggctggctgcaaaatgtgtgttaaactcccaccagtgtggcagctaccctttctcgaggttctccgactaaaacaaatgaatagattgaaatatttgtgcagcaagttctctgataaagaatgtggccaccagattttagcattcccaaaattaaaacttctgtcactataccaaatggaatcattagagcagtggcaagatttggaacatggtgttgaacaagtaagaccggttacttttccagagctggacgcaatggaagtgattgactgtccaaacttgacctttttgcctaatgttccaatgataaagttattaagtgttacaggaaacaaagtactgcttaacttagcattgagtattactaatctatcatatttgtatcttggtgcaagtccagggagttcatggagggcaagaacactatgctatagttatgatggaggtcgtgaaggaagcactgatacaaaggaggagcatattttgcccaaacacttgttgtcatggggttcactcactaaactacacctacaaggattcaatacaccagcaccagaaaatgtgaagagtagaagtggtcacatgatgtctgttcaagacttagtcctgtcttcttgtgattgcttcgtccaacatgaaggattacagtcaccactatggttctggaaatcatttggatgcctacaacaattagaaattaggtactgtgatagcctcaccttttggccagaggaggagatccgaagcttgacttctttagaaaaactcttcattgtagattgcaaaaacttcacgggtgtaccacctgaccgactgtcagcaaggccctctacagatggaggcccatgtaatttggaatacttacagattgatcgctgccccaacttagtggtattccctacaaacttcatctgcctacggatccttgtgataactgacagtaatgtacttgagggcctgcctggaggatttggttgccagggcactctaacaactctcgtaattttgggttgcccaagttttagctccctgcctgccagcattcggtgtctttcaaatctgaaaagcctagaactggcaagtaataacagcttaacctccttgcctgaagggatgcagaatctaactgctctcaaaacactacattttattaaatgtcctggtataaccgctttaccagaaggtctccagcaaagactgcatggcctccaaacgttcaccgttgaagattgccctgctctggcgaggagatgcagacgtgggggagattattgggagaaagtcaaggacattcctgatttacgagtgacaagtgagccgcgccctgtctggcaagatgcagccagaaccatcattcccaaatgcatgaacgcttggcaaagaagagcatcaagttctgggcagccagacaattaatttatactacaaaggtgcacactgttgtccctcgttctctctttcttacccttgccttgctctgctcgattaagcaagtttgagtcttacttacctgggagctacgaaaccatttgttgctccaaactactaagttctttgttgctgcttttatcaattcagacattgtttaatcgaatgaagtgcactactctgtttgaaggaacttgggcatcaagcctctcatgtttagaaattttgcaggtacctacgctgaaacattgttgaaacagaatgtgtcttaagtgagtgaagtgcattgcatttctctgctcgcaacgtatatcttcacctgctgggatcaaggcctttttgtaacaatgtacaaattgtggatatactgatattgattggagttccactgctcaacactgatTGtgtgatttcgaggaattccctctttcttgtcggagttgccaaatatatttctacatctgacccaaaggatatggggttctgtgtaacatctgataaacaataggtggtgcatacttctttccaccaagtgaaccaaacaaaggtgtgttccctgatacactttttataatttcccccaatatatttccctagaattatcgtaattttgtttatatccattcattttcagcatattcaggtatgtcagtgtttgtggattcatcctgcttccgaatcttgtgctgtttcttagatctggagacctggagttctgaagacttaccatgaatctttcgctggggacctggagctggagccgtgcaagcccgaggtggtgagggggctacgctatgattcgctgcttctcgccggccatgaccgacgccgtggcgtgcaagttccggcttgccgaatagccacaacgatgtgtttgaatggtggccggtgatgaggaagaactatgggaagcaaaaaagacgttgatgttgcggtcattcttgctttgccttgtttagacctcaaaaaattttgaccaaaaatatcacatcaaatatttgaacacatgcatgaaacgttaaatgtgggaaaaaaaaccaattgcatagtttgcatgtaaactgtgagacgaatcTtttgagcctaattacgccatgatttgacaatgtgatgctaataaatacaatgtttttct More
CDS seq		atggctgagctactctccgctcttctacctgccctcatgaagaaagctggcgagtctctctccacagaattcagcttcatcgggggtatcgaacgccgtcgttcagagctatataccttgcttcttgccatcaaccaagtgatcgccgatgccgaggaacaggcatccaagaagcctgttgtgaagtcctggatcaccaagctcaagttagcggcatgtgatgctgatgatgcccttgatgagctacagtacgaggcactccgcagtgaggcacttcgtagtgggcataaaatcaatagccgagtaaggactttcttctctcctacttacaatcctttactgttaaagtataagattgggaagaggctccagcagatagtggatcgtatcaatgagcttgttctccaaattaaacagtttgggtttgatctaaatcagcccttgaaagtggatgagaggacgccgactcattcatgtgttgttgacgatgacataattggtagagacacagaaagagatgaaatcatccatacgcttctaagtgccaacaatgaacaaaaatgggaagctctaagaacattgcttgtgtccagtggaatgggaagtgtggtgattgttacaacccgcagcttaaaagttgcatcgatcatgaaaactgataattcattgtgcctaaagcaccttaccccagaagattcctggactgtatttcgtagaagagcttttcgtgcaggtgcaggtgtggttgagactcctgaacttgttgaggttggtaaaaaaattgttcataagtgtcacggggttcctttagctataaagagtatgggggccttgatgagtacaaaacatgacacaagagactggctggccatccttgaaagtggtacttgggatgagaaaaatgagataatgcctgcactatggttgagctacaaacatttgccttcctatatgaaacagtgcttcgttttttgcgctgcttttcccaaggattgtcggattgttaaggacgacctgatacatctttggatatcaaatggctttattccatcaaatgagacctccgatgtagaactaatggggaaccatgttttctttgagcttgttttcagatcatttttccaagatattgaggaaacacggtcttctttcttatggaaagaatataagtatggttatagcgatgcaactacatgcaaaattcatgatcttatgcatgatcttgctgttcttatcagtggtgatgaatgttttgctttgcaaaatgtcactgaaatggagaaaataccagataatgtccatcatctggtttttccagagtcttacaagattgactttgtggtgcagcattgtcgaattacccgaagtttattttctttacaaaagaattacgcgtattctttcaaggaccttaaattcaaggagtccaatttcagagtgattggccttcatattagtggcattgaaagattttcaattgaaccagcatttatgaagcacttgaggtatcttgatttgtcctatagcgaaatagaaacattaactgaatcagtaaccgcactttataatttacaagtattaatgctcaatagctgtaggagtctgactatgcttccagagggcatgaaatttatggtcagtcttcgccatatatacctcgagtattgttatgctctgaagtgcatgccttccagtctagggcagctcagttctttgcgaacattgactacatatgttgttggtactgattctggatgtggaattcaggaactgaaagacttaaaacttgggggcaaactacatatacgtggtttggaggtaacaaatccattagatgcaaaagaagccaaccttgagtctaaacaaaatcttcacgaactggcagttcgttggtgctcaccgagtttcgcccgttcacctgttaattttgctgatgaagattcacaattatcttgtgctgaagaagtactgaatgctcttaaacctcctaacaaactaaaagttctaaacctaaaaggatatatgggctctagatttccaacgtggatggaagatggtgtgacactggccaacattgttaaactttctttggctggctgcaaaatgtgtgttaaactcccaccagtgtggcagctaccctttctcgaggttctccgactaaaacaaatgaatagattgaaatatttgtgcagcaagttctctgataaagaatgtggccaccagattttagcattcccaaaattaaaacttctgtcactataccaaatggaatcattagagcagtggcaagatttggaacatggtgttgaacaagtaagaccggttacttttccagagctggacgcaatggaagtgattgactgtccaaacttgacctttttgcctaatgttccaatgataaagttattaagtgttacaggaaacaaagtactgcttaacttagcattgagtattactaatctatcatatttgtatcttggtgcaagtccagggagttcatggagggcaagaacactatgctatagttatgatggaggtcgtgaaggaagcactgatacaaaggaggagcatattttgcccaaacacttgttgtcatggggttcactcactaaactacacctacaaggattcaatacaccagcaccagaaaatgtgaagagtagaagtggtcacatgatgtctgttcaagacttagtcctgtcttcttgtgattgcttcgtccaacatgaaggattacagtcaccactatggttctggaaatcatttggatgcctacaacaattagaaattaggtactgtgatagcctcaccttttggccagaggaggagatccgaagcttgacttctttagaaaaactcttcattgtagattgcaaaaacttcacgggtgtaccacctgaccgactgtcagcaaggccctctacagatggaggcccatgtaatttggaatacttacagattgatcgctgccccaacttagtggtattccctacaaacttcatctgcctacggatccttgtgataactgacagtaatgtacttgagggcctgcctggaggatttggttgccagggcactctaacaactctcgtaattttgggttgcccaagttttagctccctgcctgccagcattcggtgtctttcaaatctgaaaagcctagaactggcaagtaataacagcttaacctccttgcctgaagggatgcagaatctaactgctctcaaaacactacattttattaaatgtcctggtataaccgctttaccagaaggtctccagcaaagactgcatggcctccaaacgttcaccgttgaagattgccctgctctggcgaggagatgcagacgtgggggagattattgggagaaagtcaaggacattcctgatttacgagtgacaagtgagccgcgccctgtctggcaagatgcagccagaaccatcattcccaaatgcatgaacgcttggcaaagaagagcatcaagttctgggcagccagacaattaa More
Protein seq		MAELLSALLPALMKKAGESLSTEFSFIGGIERRRSELYTLLLAINQVIADAEEQASKKPVVKSWITKLKLAACDADDALDELQYEALRSEALRSGHKINSRVRTFFSPTYNPLLLKYKIGKRLQQIVDRINELVLQIKQFGFDLNQPLKVDERTPTHSCVVDDDIIGRDTERDEIIHTLLSANNEQKWEALRTLLVSSGMGSVVIVTTRSLKVASIMKTDNSLCLKHLTPEDSWTVFRRRAFRAGAGVVETPELVEVGKKIVHKCHGVPLAIKSMGALMSTKHDTRDWLAILESGTWDEKNEIMPALWLSYKHLPSYMKQCFVFCAAFPKDCRIVKDDLIHLWISNGFIPSNETSDVELMGNHVFFELVFRSFFQDIEETRSSFLWKEYKYGYSDATTCKIHDLMHDLAVLISGDECFALQNVTEMEKIPDNVHHLVFPESYKIDFVVQHCRITRSLFSLQKNYAYSFKDLKFKESNFRVIGLHISGIERFSIEPAFMKHLRYLDLSYSEIETLTESVTALYNLQVLMLNSCRSLTMLPEGMKFMVSLRHIYLEYCYALKCMPSSLGQLSSLRTLTTYVVGTDSGCGIQELKDLKLGGKLHIRGLEVTNPLDAKEANLESKQNLHELAVRWCSPSFARSPVNFADEDSQLSCAEEVLNALKPPNKLKVLNLKGYMGSRFPTWMEDGVTLANIVKLSLAGCKMCVKLPPVWQLPFLEVLRLKQMNRLKYLCSKFSDKECGHQILAFPKLKLLSLYQMESLEQWQDLEHGVEQVRPVTFPELDAMEVIDCPNLTFLPNVPMIKLLSVTGNKVLLNLALSITNLSYLYLGASPGSSWRARTLCYSYDGGREGSTDTKEEHILPKHLLSWGSLTKLHLQGFNTPAPENVKSRSGHMMSVQDLVLSSCDCFVQHEGLQSPLWFWKSFGCLQQLEIRYCDSLTFWPEEEIRSLTSLEKLFIVDCKNFTGVPPDRLSARPSTDGGPCNLEYLQIDRCPNLVVFPTNFICLRILVITDSNVLEGLPGGFGCQGTLTTLVILGCPSFSSLPASIRCLSNLKSLELASNNSLTSLPEGMQNLTALKTLHFIKCPGITALPEGLQQRLHGLQTFTVEDCPALARRCRRGGDYWEKVKDIPDLRVTSEPRPVWQDAARTIIPKCMNAWQRRASSSGQPDN
Function		Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLima_05g0014950	OsLima_05g0014950.01	Chr05	19375852	19379649	+	NAM
CDS seq	atggctgagctactctccgctcttctacctgccctcatgaagaaagctggcgagtctctctccacagaattcagcttcatcgggggtatcgaacgccgtcgttcagagctatataccttgcttcttgccatcaaccaagtgatcgccgatgccgaggaacaggcatccaagaagcctgttgtgaagtcctggatcaccaagctcaagttagcggcatgtgatgctgatgatgcccttgatgagctacagtacgaggcactccgcagtgaggcacttcgtagtgggcataaaatcaatagccgagtaaggactttcttctctcctacttacaatcctttactgttaaagtataagattgggaagaggctccagcagatagtggatcgtatcaatgagcttgttctccaaattaaacagtttgggtttgatctaaatcagcccttgaaagtggatgagaggacgccgactcattcatgtgttgttgacgatgacataattggtagagacacagaaagagatgaaatcatccatacgcttctaagtgccaacaatgaacaaaaatgggaagctctaagaacattgcttgtgtccagtggaatgggaagtgtggtgattgttacaacccgcagcttaaaagttgcatcgatcatgaaaactgataattcattgtgcctaaagcaccttaccccagaagattcctggactgtatttcgtagaagagcttttcgtgcaggtgcaggtgtggttgagactcctgaacttgttgaggttggtaaaaaaattgttcataagtgtcacggggttcctttagctataaagagtatgggggccttgatgagtacaaaacatgacacaagagactggctggccatccttgaaagtggtacttgggatgagaaaaatgagataatgcctgcactatggttgagctacaaacatttgccttcctatatgaaacagtgcttcgttttttgcgctgcttttcccaaggattgtcggattgttaaggacgacctgatacatctttggatatcaaatggctttattccatcaaatgagacctccgatgtagaactaatggggaaccatgttttctttgagcttgttttcagatcatttttccaagatattgaggaaacacggtcttctttcttatggaaagaatataagtatggttatagcgatgcaactacatgcaaaattcatgatcttatgcatgatcttgctgttcttatcagtggtgatgaatgttttgctttgcaaaatgtcactgaaatggagaaaataccagataatgtccatcatctggtttttccagagtcttacaagattgactttgtggtgcagcattgtcgaattacccgaagtttattttctttacaaaagaattacgcgtattctttcaaggaccttaaattcaaggagtccaatttcagagtgattggccttcatattagtggcattgaaagattttcaattgaaccagcatttatgaagcacttgaggtatcttgatttgtcctatagcgaaatagaaacattaactgaatcagtaaccgcactttataatttacaagtattaatgctcaatagctgtaggagtctgactatgcttccagagggcatgaaatttatggtcagtcttcgccatatatacctcgagtattgttatgctctgaagtgcatgccttccagtctagggcagctcagttctttgcgaacattgactacatatgttgttggtactgattctggatgtggaattcaggaactgaaagacttaaaacttgggggcaaactacatatacgtggtttggaggtaacaaatccattagatgcaaaagaagccaaccttgagtctaaacaaaatcttcacgaactggcagttcgttggtgctcaccgagtttcgcccgttcacctgttaattttgctgatgaagattcacaattatcttgtgctgaagaagtactgaatgctcttaaacctcctaacaaactaaaagttctaaacctaaaaggatatatgggctctagatttccaacgtggatggaagatggtgtgacactggccaacattgttaaactttctttggctggctgcaaaatgtgtgttaaactcccaccagtgtggcagctaccctttctcgaggttctccgactaaaacaaatgaatagattgaaatatttgtgcagcaagttctctgataaagaatgtggccaccagattttagcattcccaaaattaaaacttctgtcactataccaaatggaatcattagagcagtggcaagatttggaacatggtgttgaacaagtaagaccggttacttttccagagctggacgcaatggaagtgattgactgtccaaacttgacctttttgcctaatgttccaatgataaagttattaagtgttacaggaaacaaagtactgcttaacttagcattgagtattactaatctatcatatttgtatcttggtgcaagtccagggagttcatggagggcaagaacactatgctatagttatgatggaggtcgtgaaggaagcactgatacaaaggaggagcatattttgcccaaacacttgttgtcatggggttcactcactaaactacacctacaaggattcaatacaccagcaccagaaaatgtgaagagtagaagtggtcacatgatgtctgttcaagacttagtcctgtcttcttgtgattgcttcgtccaacatgaaggattacagtcaccactatggttctggaaatcatttggatgcctacaacaattagaaattaggtactgtgatagcctcaccttttggccagaggaggagatccgaagcttgacttctttagaaaaactcttcattgtagattgcaaaaacttcacgggtgtaccacctgaccgactgtcagcaaggccctctacagatggaggcccatgtaatttggaatacttacagattgatcgctgccccaacttagtggtattccctacaaacttcatctgcctacggatccttgtgataactgacagtaatgtacttgagggcctgcctggaggatttggttgccagggcactctaacaactctcgtaattttgggttgcccaagttttagctccctgcctgccagcattcggtgtctttcaaatctgaaaagcctagaactggcaagtaataacagcttaacctccttgcctgaagggatgcagaatctaactgctctcaaaacactacattttattaaatgtcctggtataaccgctttaccagaaggtctccagcaaagactgcatggcctccaaacgttcaccgttgaagattgccctgctctggcgaggagatgcagacgtgggggagattattgggagaaagtcaaggacattcctgatttacgagtgacaagtgagccgcgccctgtctggcaagatgcagccagaaccatcattcccaaatgcatgaacgcttggcaaagaagagcatcaagttctgggcagccagacaattaa More
Protein seq	MAELLSALLPALMKKAGESLSTEFSFIGGIERRRSELYTLLLAINQVIADAEEQASKKPVVKSWITKLKLAACDADDALDELQYEALRSEALRSGHKINSRVRTFFSPTYNPLLLKYKIGKRLQQIVDRINELVLQIKQFGFDLNQPLKVDERTPTHSCVVDDDIIGRDTERDEIIHTLLSANNEQKWEALRTLLVSSGMGSVVIVTTRSLKVASIMKTDNSLCLKHLTPEDSWTVFRRRAFRAGAGVVETPELVEVGKKIVHKCHGVPLAIKSMGALMSTKHDTRDWLAILESGTWDEKNEIMPALWLSYKHLPSYMKQCFVFCAAFPKDCRIVKDDLIHLWISNGFIPSNETSDVELMGNHVFFELVFRSFFQDIEETRSSFLWKEYKYGYSDATTCKIHDLMHDLAVLISGDECFALQNVTEMEKIPDNVHHLVFPESYKIDFVVQHCRITRSLFSLQKNYAYSFKDLKFKESNFRVIGLHISGIERFSIEPAFMKHLRYLDLSYSEIETLTESVTALYNLQVLMLNSCRSLTMLPEGMKFMVSLRHIYLEYCYALKCMPSSLGQLSSLRTLTTYVVGTDSGCGIQELKDLKLGGKLHIRGLEVTNPLDAKEANLESKQNLHELAVRWCSPSFARSPVNFADEDSQLSCAEEVLNALKPPNKLKVLNLKGYMGSRFPTWMEDGVTLANIVKLSLAGCKMCVKLPPVWQLPFLEVLRLKQMNRLKYLCSKFSDKECGHQILAFPKLKLLSLYQMESLEQWQDLEHGVEQVRPVTFPELDAMEVIDCPNLTFLPNVPMIKLLSVTGNKVLLNLALSITNLSYLYLGASPGSSWRARTLCYSYDGGREGSTDTKEEHILPKHLLSWGSLTKLHLQGFNTPAPENVKSRSGHMMSVQDLVLSSCDCFVQHEGLQSPLWFWKSFGCLQQLEIRYCDSLTFWPEEEIRSLTSLEKLFIVDCKNFTGVPPDRLSARPSTDGGPCNLEYLQIDRCPNLVVFPTNFICLRILVITDSNVLEGLPGGFGCQGTLTTLVILGCPSFSSLPASIRCLSNLKSLELASNNSLTSLPEGMQNLTALKTLHFIKCPGITALPEGLQQRLHGLQTFTVEDCPALARRCRRGGDYWEKVKDIPDLRVTSEPRPVWQDAARTIIPKCMNAWQRRASSSGQPDN More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLima_05g0014950	OsLima_05g0014950.02	Chr05	19378894	19380796	+	IsoSeq
CDS seq	atggcctccaaacgttcaccgttgaagattgccctgctctggcgaggagatgcagacgtgggggagattattgggagaaagtcaaggacattcctgatttac
Protein seq	MASKRSPLKIALLWRGDADVGEIIGRKSRTFLIY

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.094490	0.111228	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0380300	SBH	0.156068	0.080026	0.317876
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os05g31530	SBH	0.090410	0.104986	0.180062
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0380300	SBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0015100	SBH	0.168440	0.000000	1.374376
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0015100	SBH	0.000000	1.771899	0.323310
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_05g0014940	SBH	0.237723	1.694162	1.515936
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0014970	SBH	0.081286	0.059776	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0015130	SBH	1.046721	8.561803	2.671578
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0280900	RBH	3.8894665	9.4752405	0.2459835
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0014740	SBH	0.085246	0.542059	0.018264
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0291900	RBH	3.2027975	6.3934125	0.2916035
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0014980	RBH	0.378506	1.046480	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0014990	RBH	7.595492	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0015060	RBH	0.000000	0.000000	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0015110	RBH	0.347953	0.991275	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G014640	SBH	0.091366	3.895263	0.723659
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0014910	SBH	0.0	16.132452	0.672282

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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